FC930764
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: RBM11_HUMAN (Putative RNA-binding protein 11 OS=Homo sapiens GN=RBM11 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14 Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 2 Query: 92 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 331 A+ D T +VGNL+ +V EE+L+ELF+QAGP+ V + KDR + +GFV F+ E YAI +LN I+LYG+PI V Sbjct: 4 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 82
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PABP_ENCCU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Encephalitozoon cuniculi GN=PAB1 PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14 Identity = 58/181 (32.04%), Postives = 92/181 (50.83%), Query Frame = 2 Query: 113 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE---AMNGQYLCNRQITVSYAYKKDTKGERHGTPA 646 T YVG L P+ + L+ +F G V++V + K + FV F +EEDA+ AI+ +L+ + IRV K +D++ + G N+F+ NL D K L D FS FG IV+ + G S+G+GF+ + +A+ I+ +++G L +I V + KGE T A Sbjct: 15 TIYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKR--AEPVSSFAFVTFENEEDAERAIREYKHYELHNRQIRVMK--KDERPPETG-NIFVKNLPEDFTGKDLDDAFSMFGEIVSCK--VATTSHGKSKGYGFVQFKEKKAAKKVIKNFSSLDGLLLGGNRIVVELYNPEIKKGESKKTSA 188
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: RB87F_DROME (Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila melanogaster GN=Hrb87F PE=1 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 1.075e-13 Identity = 59/191 (30.89%), Postives = 91/191 (47.64%), Query Frame = 2 Query: 80 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA--SQDKKSLDVGA---NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHG 637 G+ E Q ++G LD + T++ L F + G +V+V V KD T +G+GF+ + D A + K+ G+ + +A Q+ S + GA LF+G L D DE+ L + F FG IV + I+ D DTG RGF FI +D ++ D I + N+ + V A K + G Sbjct: 14 GEEITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNA-QNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIV-SVNIVSDKDTGKKRGFAFIEFDDYDPVDKII-LQKTHSIKNKTLDVKKAIAKQDMDRQGG 201
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: RBM23_HUMAN (Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.404e-13 Identity = 54/186 (29.03%), Postives = 87/186 (46.77%), Query Frame = 2 Query: 89 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-----------LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 613 S E T + L ++ L + F G V +V + DR + +G +VEF + AI + +L G PI V + +K L AN L++G+L ++ E +L F FG I N +M+D DTG S+G+GFI++ E + A+E +NG L R + V + ++ Sbjct: 159 SPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQ-RLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKI-DNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTER 342
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: RBM28_HUMAN (RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE=1 SV=3) HSP 1 Score: 75.485 bits (184), Expect = 3.127e-13 Identity = 60/192 (31.25%), Postives = 86/192 (44.79%), Query Frame = 2 Query: 113 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL------------------NMIKLYGK------PIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 616 T +VG L P E L ELF Q GPV +V ++ + +G+G+V F ED A+K + N K GK P + KA + K + D A L I NL E L F+ FG ++ I R PD G RGFGF+ + + + A++ MN + + R + V +A KD Sbjct: 5 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVA-DKKARLIIRNLSFKCSEDDLKTVFAQFGAVL-EVNIPRKPD-GKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKD 193
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PUF68_DROME (Poly(U)-binding-splicing factor half pint OS=Drosophila melanogaster GN=pUf68 PE=1 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 3.127e-13 Identity = 61/221 (27.60%), Postives = 103/221 (46.61%), Query Frame = 2 Query: 74 LLGQHSAERNQDATA-----YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL-CNRQITVSYAYKKDTKGERHGTPAERILAA 664 L Q + + Q A A YVG++ ++ E+ + F GP+ ++ + D +T H+G+ FVE+ E A A++ +N + G+ I+V + S ++ KS + +++ ++ PD+ E+ + F AFG I+ K+ + +G+GFI Y + +A D AI +MN GQ L R IT A T T A AA Sbjct: 113 LATQRTQVQRQQALALMCRVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFN---RIYVASIHPDLSEEDIKSVFEAFGPIL-YCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRSITPPNALACPTTNSTMPTAAAVAAAA 329
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: RB97D_DROME (Ribonucleoprotein RB97D OS=Drosophila melanogaster GN=Rb97D PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.085e-13 Identity = 48/149 (32.21%), Postives = 78/149 (52.35%), Query Frame = 2 Query: 119 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA----SQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 550 ++G L P TEE L + Q G VV+V V +D T +G+GF+ + D A + I + GK + +A ++ + ++ LF+G L + DE+ L + F FG +V + K++ D TG RGF F+ +D ++A D AI Sbjct: 35 FIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQENRPHI-IDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVV-SVKLLTDKTTGKRRGFAFVEFDDYDAVDKAI 181
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ELAV4_XENTR (ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl4 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.085e-13 Identity = 49/131 (37.40%), Postives = 72/131 (54.96%), Query Frame = 2 Query: 236 GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN--RQITVSYAYKKDTK 622 GYGFV + +DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS +G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A K Sbjct: 122 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNPSQK 250
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ELAV4_XENLA (ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.085e-13 Identity = 49/131 (37.40%), Postives = 72/131 (54.96%), Query Frame = 2 Query: 236 GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN--RQITVSYAYKKDTK 622 GYGFV + +DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS +G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A K Sbjct: 122 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNPSQK 250
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ROA1_DROME (Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila melanogaster GN=Hrb98DE PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.335e-13 Identity = 57/178 (32.02%), Postives = 87/178 (48.88%), Query Frame = 2 Query: 119 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA--SQDKKSLDVGA---NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHG 637 ++G LD + T+E L F + G +V+V V KD T +G+GF+ + D A K K+ G+ + +A QD S + GA LF+G L D DE+ + D F FG IV + I+ D +TG RGF F+ +D ++ D + Q L + + V A K + G Sbjct: 34 FIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQK-SRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIV-DINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQ-LNGKMVDVKKALPKQNDQQGGG 208 The following BLAST results are available for this feature:
BLAST of FC930764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 192
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930764 ID=FC930764; Name=FC930764; organism=Citrus clementina; type=EST; length=704bpback to top |