FC930764

Overview
NameFC930764
Unique NameFC930764
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930764_ssr6 microsatellite FC930764_ssr6:6..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4556 contig Ccv1_Contig4556:81..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.708e-27
Identity = 64/165 (38.79%), Postives = 102/165 (61.82%), Query Frame = 2
Query:  110 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 601
            A+ Y+G+L P VTE +L+E F  AGP++++ V +D  T    GY ++ F+   DA+ A+  +N   + G+PIR+  + +D      G  N+FI NLD  +D K LYDTFSAFG I++   +    D   SRG+GF+ +++ EA++ AI+ MNG  L +R++ V +
Sbjct:   11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVC---DEYGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGH 172          

HSP 2 Score: 91.6633 bits (226), Expect = 4.217e-18
Identity = 59/178 (33.15%), Postives = 103/178 (57.87%), Query Frame = 2
Query:  119 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK-DTKGE 628
            ++ NLD  +  + L++ F   G +++  V  D   +  +GYGFV F ++E A+ AI+ +N + L  + + V    S+ ++ L+ GA      N++I N   D+D+K L + FSAFG  ++  K+M D ++G SRGFGF++Y + E +  A+  MNG+ +  R + V  A K+ + +GE
Sbjct:  102 FIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGS--RGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLS-VKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGE 275          

HSP 3 Score: 81.2629 bits (199), Expect = 5.699e-15
Identity = 52/197 (26.40%), Postives = 101/197 (51.27%), Query Frame = 2
Query:   83 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 622
            ++ A+  +    Y+ N    + ++ L E+F   G  ++V V  D  +   +G+GFV + + E+A  A+  +N  ++ G+ + V +A                  Q++ +   G NL++ NLD  +D+  L   FS +G I T+ K+M +   G+S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ +
Sbjct:  182 EYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTI-TSTKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER 374          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.914e-27
Identity = 67/165 (40.61%), Postives = 103/165 (62.42%), Query Frame = 2
Query:  110 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 601
            A+ YVG LDP VTE +L+E+F   GPV ++ V +D VT    GY +V + +  D + A++ LN   + G+  R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I+ + K+  D + G SRGF F+ Y + EA+DAAI+A+NG  L ++++ V +
Sbjct:   46 ASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDIL-SCKVGTD-ENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGH 208          

HSP 2 Score: 99.7525 bits (247), Expect = 1.549e-20
Identity = 63/192 (32.81%), Postives = 103/192 (53.65%), Query Frame = 2
Query:   98 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA------------SQDKKSLD-----VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 622
            R Q    Y+ N+D +VT+    +L    GP ++V + +D    + +G+GFV + + E A  A+  LN  ++ GK +   +A            S ++K L+      G NL++ NLD + D+  L   F AFG I T+ K+MRD D+G SRGFGF+ Y S + +  A+  MNG+ +  + + V+ A +KD +
Sbjct:  223 RAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDE-KGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTI-TSSKVMRD-DSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVR 411          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PABP_CANAL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.914e-27
Identity = 71/185 (38.38%), Postives = 110/185 (59.46%), Query Frame = 2
Query:   80 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV-SYAYKKDTKGE 628
            G+ S      A+ YVG L+P V E  L+E+F   G V ++ V +D V+    GY +V +   ED + AI+ LN   + G+P R+  + +D  +   G  N+FI NL P +D K L+DTFSAFG I+ + K+  D + G S+ FGF+ Y++ EA++AAIE +NG  L +R++ V  +  KKD + +
Sbjct:   42 GESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKIL-SCKVATD-EFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESK 224          

HSP 2 Score: 95.1301 bits (235), Expect = 3.814e-19
Identity = 61/209 (29.19%), Postives = 109/209 (52.15%), Query Frame = 2
Query:   77 LGQHSAERNQDA----------TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV-----------------GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 622
            +G+H +++++++            YV N+D   +EE   +LF   G + ++Y+ KD+     +G+GFV F   E A  A++ LN  ++ G+ I V +A + ++ L+                  G NLF+ NLD  +D + L + F  FG I T+ K+M D + G S+GFGF+ + + E +  AI  MN + +  + + V+ A +KD +
Sbjct:  212 VGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQ-DGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTI-TSAKVMVD-EAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDVR 417          

HSP 3 Score: 76.6406 bits (187), Expect = 1.404e-13
Identity = 51/182 (28.02%), Postives = 98/182 (53.85%), Query Frame = 2
Query:   89 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 613
            SA R+ D   ++ NL P +  + L + F   G +++  V  D      + +GFV + + E A+ AI+ +N + L  + +     ++K  ++ K  ++ AN   +++ N+D +  E+     FS FG I T+  + +D D G S+GFGF++++  E++  A+E +N + +  ++I V  A KK
Sbjct:  133 SARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQ-SKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKI-TSIYLEKDQD-GKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKK 311          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.805e-27
Identity = 72/175 (41.14%), Postives = 107/175 (61.14%), Query Frame = 2
Query:  110 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV-SYAYKKDTKGE 628
            A+ YVG L+P V E LL+E+F   G V ++ V +D VT    GY +V F   ED + AI+ LN   + G+P R+  + +D      G  N+FI NL P +D K L+DTF+AFG I+ + K+  D D G S+ FGF+ Y++ EA++AAIE +NG  L +R++ V  +  KKD + +
Sbjct:   51 ASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKIL-SCKVATD-DMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESK 223          

HSP 2 Score: 95.1301 bits (235), Expect = 3.814e-19
Identity = 62/209 (29.67%), Postives = 108/209 (51.67%), Query Frame = 2
Query:   77 LGQHSAERNQDA----------TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV-----------------GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 622
            +G+H +++++++            Y  N+D   +EE   +LF   G + ++Y+ KD      +G+GFV F + E A  A+  LN  ++ G+ I V +A + ++ L+                  G NLFI NLD  +D + L + F  FG I T+ ++M D +TG S+GFGF+ + S E +  AI  MN + +  + + V+ A +KD +
Sbjct:  211 VGKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDH-EGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSI-TSARVMVD-ETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALAQRKDVR 416          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.805e-27
Identity = 68/175 (38.86%), Postives = 109/175 (62.29%), Query Frame = 2
Query:  110 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 628
            A+ YVG LDP VTE +L+ELF   G V ++ V +D VT    GY +V + +  D + A++ LN   + G+P R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA+  AI+ +NG  L ++++ V  +  KKD + +
Sbjct:   55 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL-SCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSK 227          

HSP 2 Score: 90.1225 bits (222), Expect = 1.227e-17
Identity = 57/177 (32.20%), Postives = 96/177 (54.24%), Query Frame = 2
Query:  119 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 628
            ++ NLD  +  + L + F   G +++  V +D   N  +GYGFV + + E A  AIK +N + L  K + V     K  +  K  ++ AN   +++ N+D D  E+   D F  FG I T+  + RD ++G SRGFGF+++ S + + AA+EA+N +    +++ V  A KK  + E
Sbjct:  146 FIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEI-TSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREE 320          

HSP 3 Score: 80.8777 bits (198), Expect = 7.444e-15
Identity = 63/261 (24.14%), Postives = 111/261 (42.53%), Query Frame = 2
Query:   77 LGQHSAERNQDA----------TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-----------------DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRD-------------------PDT---------------------------------GNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 622
            +G H A++++ +            YV N+D   TEE   +LF + G + +  + +D  +   +G+GFV F S ++A  A++ LN     G+ + V +A +                 +K S   G NL+I NL  D+D++ L + FS++G I T+ K+MRD                   P+T                                 G S+GFGF+ + S + +  A+  MN + +  + + V+ A +KD +
Sbjct:  215 VGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTI-TSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDNKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVR 474          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.805e-27
Identity = 63/165 (38.18%), Postives = 101/165 (61.21%), Query Frame = 2
Query:  110 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 601
            A+ Y+G+L P VTE +L+E F  AGP++++ V +D  T     Y ++ F+   DA+ A+  +N   + G+PIR+  + +D      G  N+FI NLD  +D K LYDTFSAFG I++   +    D   SRG+GF+ +++ EA++ AI+ MNG  L +R++ V +
Sbjct:   11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVC---DEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGH 172          

HSP 2 Score: 92.0485 bits (227), Expect = 3.229e-18
Identity = 59/172 (34.30%), Postives = 98/172 (56.98%), Query Frame = 2
Query:  119 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 613
            ++ NLD  +  + L++ F   G +++  V  D   +  +GYGFV F + E A+ AI+ +N + L  + + V    S+ ++ L+ GA      N++I N   D+D+K L + FSAFG  ++  K+M D D+G SRGFGF++Y + E +  A+  MNG+ +  R I V  A K+
Sbjct:  102 FIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGS--RGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLS-VKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269          

HSP 3 Score: 78.9518 bits (193), Expect = 2.829e-14
Identity = 52/197 (26.40%), Postives = 100/197 (50.76%), Query Frame = 2
Query:   83 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 622
            ++ A+  +    Y+ N    + ++ L E+F   G  ++V V  D  +   +G+GFV + + E+A  A+  +N  ++ G+ I V +A                  Q++ +   G NL++ NLD  +D+  L   F  +G I T+ K+M +   G+S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ +
Sbjct:  182 EYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTI-TSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEER 374          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.970e-27
Identity = 73/187 (39.04%), Postives = 112/187 (59.89%), Query Frame = 2
Query:   80 GQHSAERNQDATA--YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV-SYAYKKDTKGE 628
            G+ + E  ++A+A  YVG L+P V E LL+E+F   G V ++ V +D VT    GY +V F    D   AI+ LN   + G+P R+  + +D      G  N+FI NL P +D K L+DTFSAFG I+ + K+  D + G S+ FGF+ Y++ EA++AAIE +NG  L +R++ V  +  K+D + +
Sbjct:   46 GEGAGEEGEEASASLYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEELNYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRIL-SCKVATD-ELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESK 230          

HSP 2 Score: 99.7525 bits (247), Expect = 1.549e-20
Identity = 64/209 (30.62%), Postives = 109/209 (52.15%), Query Frame = 2
Query:   77 LGQHSAERNQDA----------TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV-----------------GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 622
            +G+H ++R++++            YV NL P+V      E+F   GPV +V++  D+     +G+GFV F + E A  A+K +N  ++ G+ + V +A + ++ LD                  G NLF+ NLD  +D + L + F  FG I T+ ++M D D G S+GFGF+ + S E +  AI  MN + +  + + V+ A +KD +
Sbjct:  218 VGKHVSKRDRESKFEEMKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQ-EGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTI-TSARVMVD-DAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQRKDVR 423          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PABP_CANGA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida glabrata GN=PAB1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.970e-27
Identity = 69/172 (40.12%), Postives = 103/172 (59.88%), Query Frame = 2
Query:   95 ERNQDATA----YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 595
            E NQ  T     YVG+LDP V+E  L+++F   G V ++ V +D +T    GY +V F   + A  AI+ LN   + GK  R+  + +D      GA N+FI NL PD+D K LYDTFS FG I+++ K+  D +TG S+GFG++ ++  E++  AI+A+NG  L  ++I V
Sbjct:   26 EENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSS-KVATD-ETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYV 195          

HSP 2 Score: 88.1965 bits (217), Expect = 4.662e-17
Identity = 60/200 (30.00%), Postives = 103/200 (51.50%), Query Frame = 2
Query:  119 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-----------------DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAAN 667
            Y+ N++ + T++   EL  + G   +V + +      ++G+GFV F + EDA   ++ LN  +  G+P+ VN+A +                 +K +   G NLFI NLD  +D+K L + F+ +G I T+ K+M   + G S+GFGF+ + + E +  AI   N Q +  + + V+ A +KD    R    A++I A N
Sbjct:  219 YIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGE-NKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKKLEEEFAPYGTI-TSAKVM-TTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDV---RRSQLAQQIQARN 412          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.970e-27
Identity = 62/175 (35.43%), Postives = 108/175 (61.71%), Query Frame = 2
Query:  110 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV-SYAYKKDTKGE 628
            A+ YVG+L P VTE +L+E F  AGP++++ + +D +T+    Y +V F+  +DA++A+  +N   + GKP+R+  + +D      G  N+F+ NLD  ++ K LYDT SAFG I++   +    D   S+G+GF+ +++ EA++ AI+ MNG  L  R++ V  +  +K+ + E
Sbjct:   11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVC---DENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAE 182          

HSP 2 Score: 93.5893 bits (231), Expect = 1.110e-18
Identity = 59/172 (34.30%), Postives = 99/172 (57.56%), Query Frame = 2
Query:  119 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 613
            +V NLD  +  + L++     G +++  V  D   N  +GYGFV F + E A+ AIK +N + L G+ + V +  S+ ++  ++GA      N++I N   D+D++ L D F  FG  ++  K+M D ++G S+GFGF+S++  E +  A++ MNG+ L  +QI V  A KK
Sbjct:  102 FVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALS-VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269          

HSP 3 Score: 91.6633 bits (226), Expect = 4.217e-18
Identity = 60/194 (30.93%), Postives = 98/194 (50.52%), Query Frame = 2
Query:   92 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 622
            A   +    Y+ N    + +E L +LF + GP ++V V  D  +   +G+GFV F   EDA  A+  +N  +L GK I V +A                  QD+ +     NL++ NLD  +D++ L   FS FG I T+ K+M +   G S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ +
Sbjct:  185 ARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.491e-27
Identity = 65/165 (39.39%), Postives = 98/165 (59.39%), Query Frame = 2
Query:  110 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 601
            A+ YVG+L P VTE +L+E F  AGP++++ V +D  T    GY ++ F+   DA+ A+  +N   L G+PIR+  + +D      G  N+FI NL+  +D K LYDTFS FG I++        D   SRGFGF+ +++ EA+  AI  MNG  L +R++ V +
Sbjct:   11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVAC---DEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH 172          

HSP 2 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 57/185 (30.81%), Postives = 97/185 (52.43%), Query Frame = 2
Query:  119 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 622
            YV NL   V E+ L +LF Q G +++V V +D  +   + +GFV F   E+A  A+  +N  ++ G+ +   +A                  QD+     G NL++ NLD  +D+  L   FS +GVI T+ K+M +   G+S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ +
Sbjct:  194 YVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVI-TSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEER 374          
The following BLAST results are available for this feature:
BLAST of FC930764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
EPABB_XENLA1.708e-2738.79Embryonic polyadenylate-binding protein B OS=Xenop... [more]
PABP_CRYNE2.914e-2740.61Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CANAL2.914e-2738.38Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_DEBHA3.805e-2741.14Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_COCIM3.805e-2738.86Polyadenylate-binding protein, cytoplasmic and nuc... [more]
EPABA_XENLA3.805e-2738.18Embryonic polyadenylate-binding protein A OS=Xenop... [more]
PABP_PICGU4.970e-2739.04Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CANGA4.970e-2740.12Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP3_HUMAN4.970e-2735.43Polyadenylate-binding protein 3 OS=Homo sapiens GN... [more]
PAP1L_HUMAN6.491e-2739.39Polyadenylate-binding protein 1-like OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionC34108G08EF PostHarvP1 Citrus clementina cDNA clone C34108G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930764 ID=FC930764; Name=FC930764; organism=Citrus clementina; type=EST; length=704bp
GAAGTAGAAGAAGAAGAAGTAATAACGAGTAAAAGGCATGACCACTCGAA
TCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGAGA
AATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACTGA
GGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTTGTTAATGTGT
ATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTGTA
GAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAATAT
GATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGACA
AAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACCCA
GATGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTCAT
TGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCGTG
GTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTATT
GAGGCAATGAATGGCCAATACCTTTGCAACCGTCAAATTACTGTCTCATA
TGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGGCAGAGA
GAATTTTGGCGGCAAACATCCGAGTTCCCAGAAGAGTAGCCCACACTTTA
TTTG
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