FC930764 | Citrus Genome Database

Overview


Name	FC930764
Unique Name	FC930764
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	704

Libraries


Library Name	Type
PostHarvP1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
FC930764_ssr6	microsatellite	FC930764_ssr6:6..17.	BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4556	contig	Ccv1_Contig4556:81..785.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

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BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.107e-26
Identity = 65/200 (32.50%), Postives = 119/200 (59.50%), Query Frame = 2

Query:   95 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKS-LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANIR-VPRRV 688
            + + +++ Y G+LDP+VTE  L++LF     VV+V V +D+      GY ++ F +  DA  A++ LN   L+ +PIR+  +++D  + L    N+FI NLD  +D K L++TFS+FG I++  K+  D  TG S+G+GF+ ++  E++ AAI+ +NG  + ++Q+ V +  ++  +     TP  R     ++ +P+ +
Sbjct:   44 QTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSC-KVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEI 240

HSP 2 Score: 93.5893 bits (231), Expect = 1.110e-18
Identity = 61/177 (34.46%), Postives = 95/177 (53.67%), Query Frame = 2

Query:  119 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI-------RVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 628
            ++ NLD  +  + L+E F   G +++  V  D VT   +GYGFV+F  EE A  AI  LN + +  K +       R  +A  +        N+++ NL  ++ E  L  TF  FGVI ++  +MRD  +GNSR FGF++++  EA+ +A+E MNG  L +  + V  A KK  + E
Sbjct:  139 FIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVI-SSAVVMRD-QSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREE 312

HSP 3 Score: 82.4185 bits (202), Expect = 2.558e-15
Identity = 58/185 (31.35%), Postives = 99/185 (53.51%), Query Frame = 2

Query:  119 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI---RVNKASQDKKSL--------------DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 622
            YV NL  ++ E+ L + F + G + +  V +D+  N  + +GFV F   E A  A++ +N I L    +   R  K S+ ++ L                GANL++ NLD  VD++ L + FS +G  VT+ K+M +P  G SRGFGF++Y + E +  A+  MNG+ +  + + ++ A +K+ +
Sbjct:  232 YVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGN-VTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDR 413

[Close]

BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.467e-26
Identity = 67/188 (35.64%), Postives = 112/188 (59.57%), Query Frame = 2

Query:   62 VGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKS-LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 622
            V A      + + + +++ YVG+LDP V E  L +LF Q  PV N+ V +D +T+   GY +V F + EDA  A++ LN   +  +PIR+  +++D  + L    N+FI NLD  +D K LY+TFS+FG I+ + K+  D   G S+G+GF+ ++  E + AAI+ +NG  L ++Q+ V +  ++  +
Sbjct:   29 VAAAAAAAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTIL-SCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDR 213

HSP 2 Score: 88.1965 bits (217), Expect = 4.662e-17
Identity = 61/177 (34.46%), Postives = 94/177 (53.11%), Query Frame = 2

Query:  119 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK--ASQDKKSLDVGA-----NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 628
            ++ NLD  +  + L+E F   G +++  V  D V    +GYGFV+F  EE A  AI  LN + L  K + V      QD+   + GA     N+++ NL  ++ +  L  TF  +G I ++  +M+D  +GNSR FGF+++ S EA+  A+E MNG  L    + V  A KK  + E
Sbjct:  135 FIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDI-SSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREE 308

HSP 3 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 59/186 (31.72%), Postives = 102/186 (54.84%), Query Frame = 2

Query:  119 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLD--------------VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 622
            YV NL  ++T++ L + F + G + +  V KD+  N  + +GFV F S E A  A++ +N I L G+ +    R  K S  ++ L                G+NL++ NLD  V+++ L + FS +G  VT+ K+M +   G SRGFGF++Y + E +  A++ MNG+ +  + + V+ A +K+ +
Sbjct:  228 YVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGN-SRSFGFVNFVSPEAAAVAVEKMNGISL-GEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGN-VTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEER 409

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BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.207e-26
Identity = 67/178 (37.64%), Postives = 105/178 (58.99%), Query Frame = 2

Query:   89 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKD 616
            S   N +A+ YVG LDP +TE LL+++F   GP+ ++ V +D VT    GY +V +   E    AI+ LN  ++ G+P R+  + +D      G+ N+FI NL P +D K L++TFS FG ++ + K+  D + GNSRGFGF+ +     +  AIEA+NG  +   ++ V+ +  KKD
Sbjct:   43 SKVENNNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVL-SCKVALD-ENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKD 218

HSP 2 Score: 91.6633 bits (226), Expect = 4.217e-18
Identity = 63/200 (31.50%), Postives = 103/200 (51.50%), Query Frame = 2

Query:  119 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-----------------DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAAN 667
            YV N+D + T+E   +LF Q G +V+  + KD      +G+GFV F     A  A++ LN  +   + + V +A +                 +K +   G NLFI NLD  +D++ L + F+ +G I T+ ++MRD + GNS+GFGF+ + S E +  A+   N Q +  + + V+ A +KD    R    A++I A N
Sbjct:  234 YVKNIDVETTDEEFEQLFSQYGEIVSAALEKD-AEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTI-TSARVMRDQE-GNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRKDV---RRSQLAQQIQARN 427

[Close]

BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PABP_PICST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia stipitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.224e-25
Identity = 68/175 (38.86%), Postives = 105/175 (60.00%), Query Frame = 2

Query:  110 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV-SYAYKKDTKGE 628
            A+ YVG L+  V E  L+E+F   G V ++ V +D V+    GY +V +   ED + AI+ LN   + G+P R+  + +D  +   G  N+FI NL P +D K L+DTFS FG I+ + K+  D D G S+ FGF+ Y++ EA++AAIE +NG  L +R++ V  +  KKD + +
Sbjct:   52 ASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKIL-SCKVATD-DMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESK 224

HSP 2 Score: 96.6709 bits (239), Expect = 1.311e-19
Identity = 62/209 (29.67%), Postives = 110/209 (52.63%), Query Frame = 2

Query:   77 LGQHSAERNQDA----------TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV-----------------GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 622
            +G+H +++++++            YV N+D + +EE L +LF   G + ++Y+ KD      +G+GFV +   E A  A++ LN  ++ G+ I V +A + ++ ++                  G NLFI NLD  +D + L + F  FG I T+ ++M D +TG S+GFGF+ + S E +  AI  MN +    + + V+ A +KD +
Sbjct:  212 VGKHISKKDRESKFEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKD-AEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGTI-TSARVMVD-ETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVALAQRKDVR 417

HSP 3 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 52/187 (27.81%), Postives = 102/187 (54.55%), Query Frame = 2

Query:   89 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 628
            SA R+ D   ++ NL P +  + L + F   G +++  V  D +    + +GFV + + E A+ AI+ +N + L  + +     ++K  ++ K  ++ AN   +++ N+D +  E+ L   F+ +G I T+  + +D + G S+GFGF++Y+  EA+  A+E +N + +  ++I V  A KK  + E
Sbjct:  133 SARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCKVATDDMGQ-SKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAI-TSIYLEKDAE-GKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERME 316

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BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.224e-25
Identity = 65/169 (38.46%), Postives = 102/169 (60.36%), Query Frame = 2

Query:  110 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 613
            A+ YVG LDP VTE +L+ELF   G V ++ V +D VT    GY +V +      + A+  LN   + GKP R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I+ + K+ +D + G S+G+GF+ Y++ EA++ AI+ +NG  L ++++ V +   K
Sbjct:   42 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNIL-SCKVAQD-EFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK 208

HSP 2 Score: 89.3521 bits (220), Expect = 2.093e-17
Identity = 55/177 (31.07%), Postives = 101/177 (57.06%), Query Frame = 2

Query:  119 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 628
            ++ NLD  +  + L + F   G +++  V +D    + +GYGFV + + E A+ AIK +N + L  K +     ++K  +  K  ++ AN   ++I N+DP+V+++     F  FG I T+  + RD + G SRGFGF+++ + E++ AA+E MN + + ++++ V  A KK  + E
Sbjct:  133 FIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEI-TSATLSRDSE-GKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREE 306

[Close]

BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4)

HSP 1 Score: 116.316 bits (290), Expect = 1.599e-25
Identity = 65/167 (38.92%), Postives = 100/167 (59.88%), Query Frame = 2

Query:  101 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 598
            N  A+ YVG+L+P V+E  L+++F   G V ++ V +D +T    GY +V F   E    AI+ LN   + G+  R+  + +D      G+ N+FI NL PD+D K LYDTFS FG I+++ KI  D + G S+GFGF+ ++   A+  AI+A+NG  L  ++I V+
Sbjct:   35 NSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSS-KIATD-ENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVA 199

HSP 2 Score: 103.605 bits (257), Expect = 1.072e-21
Identity = 66/200 (33.00%), Postives = 107/200 (53.50%), Query Frame = 2

Query:  119 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV-----------------GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAAN 667
            YV N++ + T+E   ELF + GP+V+  + KD    L +G+GFV +   EDA  A++ LN  +L G+ + V +A +  + + V                 G NLF+ NLD  VD++ L + F+ +G I T+ K+MR  + G S+GFGF+ + + E +  AI   N Q +  + + V+ A +KD    R    A++I A N
Sbjct:  222 YVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKL-KGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTI-TSAKVMRT-ENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDV---RRSQLAQQIQARN 415

HSP 3 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 51/185 (27.57%), Postives = 93/185 (50.27%), Query Frame = 2

Query:   89 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI-------RVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 622
            S  +      ++ NL P +  + L++ F   G +++  +  D      +G+GFV F  E  A  AI  LN + L G+ I       R  + SQ +++     NL++ N++ +  ++   + F+ FG IV+   + +D D G  +GFGF++Y+  E +  A+EA+N   L   ++ V  A KK+ +
Sbjct:  119 SLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVS-ASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNER 300

[Close]

BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.088e-25
Identity = 73/197 (37.06%), Postives = 106/197 (53.81%), Query Frame = 2

Query:  110 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANIRVPRRVAHT 697
            A  YVG+LDP VTE++L++ F  AGP+    + +D VT    GYG+V FR   DA++A+  +N   + GKP R+  +  D +    G  N+FI NLD  +D + L+  FSAFG I++   +    D   S+G+ ++ +DS  A++ AI  MNG  L NRQ+ V           R   P ER  AA +R   R   T
Sbjct:   18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVC---DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG----------RFKFPEER--AAEVRTRDRATFT 199

HSP 2 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 52/185 (28.11%), Postives = 95/185 (51.35%), Query Frame = 2

Query:   95 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD-----------------KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 598
            +R      +V N+   + +E L ELF + GP  +V V +D  +   +G+GFV + + E A  A+  L+   + GK + V +A +                  +KS   G  ++I NLD  ++++ L + FS+FG I +  K+M +   G  +GFG + + SFE +  A++ MNG+ + ++ + V+
Sbjct:  194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSI-SRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVT 374

HSP 3 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 48/173 (27.75%), Postives = 93/173 (53.76%), Query Frame = 2

Query:  119 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 613
            ++ NLD  +    L+ LF   G +++  V  D   N  +GY +V F S   A+ AI  +N ++L  + + V +    ++++ +V         N+F+ N+  D+D++ L + F  +G    + K++RD  +G S+GFGF+ Y++ EA+  A+  ++G+ +  + + V  A KK
Sbjct:  109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP-TESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277

[Close]

BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.088e-25
Identity = 73/197 (37.06%), Postives = 106/197 (53.81%), Query Frame = 2

Query:  110 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANIRVPRRVAHT 697
            A  YVG+LDP VTE++L++ F  AGP+    + +D VT    GYG+V FR   DA++A+  +N   + GKP R+  +  D +    G  N+FI NLD  +D + L+  FSAFG I++   +    D   S+G+ ++ +DS  A++ AI  MNG  L NRQ+ V           R   P ER  AA +R   R   T
Sbjct:   18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVC---DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG----------RFKFPEER--AAEVRTRDRATFT 199

HSP 2 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 52/185 (28.11%), Postives = 95/185 (51.35%), Query Frame = 2

Query:   95 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD-----------------KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 598
            +R      +V N+   + +E L ELF + GP  +V V +D  +   +G+GFV + + E A  A+  L+   + GK + V +A +                  +KS   G  ++I NLD  ++++ L + FS+FG I +  K+M +   G  +GFG + + SFE +  A++ MNG+ + ++ + V+
Sbjct:  194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSI-SRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVT 374

HSP 3 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 48/173 (27.75%), Postives = 93/173 (53.76%), Query Frame = 2

Query:  119 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 613
            ++ NLD  +    L+ LF   G +++  V  D   N  +GY +V F S   A+ AI  +N ++L  + + V +    ++++ +V         N+F+ N+  D+D++ L + F  +G    + K++RD  +G S+GFGF+ Y++ EA+  A+  ++G+ +  + + V  A KK
Sbjct:  109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP-TESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277

[Close]

BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PABP5_MACMU (Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.088e-25
Identity = 73/197 (37.06%), Postives = 106/197 (53.81%), Query Frame = 2

Query:  110 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANIRVPRRVAHT 697
            A  YVG+LDP VTE++L++ F  AGP+    + +D VT    GYG+V FR   DA++A+  +N   + GKP R+  +  D +    G  N+FI NLD  +D + L+  FSAFG I++   +    D   S+G+ ++ +DS  A++ AI  MNG  L NRQ+ V           R   P ER  AA +R   R   T
Sbjct:   18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVC---DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG----------RFKFPEER--AAEVRTRDRATFT 199

HSP 2 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 52/185 (28.11%), Postives = 95/185 (51.35%), Query Frame = 2

Query:   95 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD-----------------KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 598
            +R      +V N+   + +E L ELF + GP  +V V +D  +   +G+GFV + + E A  A+  L+   + GK + V +A +                  +KS   G  ++I NLD  ++++ L + FS+FG I +  K+M +   G  +GFG + + SFE +  A++ MNG+ + ++ + V+
Sbjct:  194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSI-SRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVT 374

HSP 3 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 48/173 (27.75%), Postives = 93/173 (53.76%), Query Frame = 2

Query:  119 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 613
            ++ NLD  +    L+ LF   G +++  V  D   N  +GY +V F S   A+ AI  +N ++L  + + V +    ++++ +V         N+F+ N+  D+D++ L + F  +G    + K++RD  +G S+GFGF+ Y++ EA+  A+  ++G+ +  + + V  A KK
Sbjct:  109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP-TESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277

[Close]

BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PABP5_HYLLA (Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.088e-25
Identity = 73/197 (37.06%), Postives = 106/197 (53.81%), Query Frame = 2

Query:  110 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANIRVPRRVAHT 697
            A  YVG+LDP VTE++L++ F  AGP+    + +D VT    GYG+V FR   DA++A+  +N   + GKP R+  +  D +    G  N+FI NLD  +D + L+  FSAFG I++   +    D   S+G+ ++ +DS  A++ AI  MNG  L NRQ+ V           R   P ER  AA +R   R   T
Sbjct:   18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVC---DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG----------RFKFPEER--AAEVRTRDRATFT 199

HSP 2 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 52/185 (28.11%), Postives = 95/185 (51.35%), Query Frame = 2

Query:   95 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD-----------------KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 598
            +R      +V N+   + +E L ELF + GP  +V V +D  +   +G+GFV + + E A  A+  L+   + GK + V +A +                  +KS   G  ++I NLD  ++++ L + FS+FG I +  K+M +   G  +GFG + + SFE +  A++ MNG+ + ++ + V+
Sbjct:  194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSI-SRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVT 374

HSP 3 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 48/173 (27.75%), Postives = 93/173 (53.76%), Query Frame = 2

Query:  119 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 613
            ++ NLD  +    L+ LF   G +++  V  D   N  +GY +V F S   A+ AI  +N ++L  + + V +    ++++ +V         N+F+ N+  D+D++ L + F  +G    + K++RD  +G S+GFGF+ Y++ EA+  A+  ++G+ +  + + V  A KK
Sbjct:  109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP-TESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277

The following BLAST results are available for this feature:

BLAST of FC930764 vs. ExPASy Swiss-Prot

BLAST of FC930764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192


Match Name	E-value	Identity	Description
PABP3_ARATH	1.107e-26	32.50	Polyadenylate-binding protein 3 OS=Arabidopsis tha...	[more]
PABP5_ARATH	2.467e-26	35.64	Polyadenylate-binding protein 5 OS=Arabidopsis tha...	[more]
PABP_KLULA	4.207e-26	37.64	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_PICST	1.224e-25	38.86	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_EMENI	1.224e-25	38.46	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_YEAST	1.599e-25	38.92	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP5_PONPY	2.088e-25	37.06	Polyadenylate-binding protein 5 OS=Pongo pygmaeus ...	[more]
PABP5_PANTR	2.088e-25	37.06	Polyadenylate-binding protein 5 OS=Pan troglodytes...	[more]
PABP5_MACMU	2.088e-25	37.06	Polyadenylate-binding protein 5 OS=Macaca mulatta ...	[more]
PABP5_HYLLA	2.088e-25	37.06	Polyadenylate-binding protein 5 OS=Hylobates lar G...	[more]

Pages

Properties


Property Name	Value
Genbank description	C34108G08EF PostHarvP1 Citrus clementina cDNA clone C34108G08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC930764 ID=FC930764; Name=FC930764; organism=Citrus clementina; type=EST; length=704bp
GAAGTAGAAGAAGAAGAAGTAATAACGAGTAAAAGGCATGACCACTCGAA
TCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGAGA
AATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACTGA
GGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTTGTTAATGTGT
ATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTGTA
GAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAATAT
GATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGACA
AAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACCCA
GATGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTCAT
TGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCGTG
GTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTATT
GAGGCAATGAATGGCCAATACCTTTGCAACCGTCAAATTACTGTCTCATA
TGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGGCAGAGA
GAATTTTGGCGGCAAACATCCGAGTTCCCAGAAGAGTAGCCCACACTTTA
TTTG