FC930764

Overview
NameFC930764
Unique NameFC930764
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PABP5_HUMAN (Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.088e-25
Identity = 73/197 (37.06%), Postives = 106/197 (53.81%), Query Frame = 2
Query:  110 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANIRVPRRVAHT 697
            A  YVG+LDP VTE++L++ F  AGP+    + +D VT    GYG+V FR   DA++A+  +N   + GKP R+  +  D +    G  N+FI NLD  +D + L+  FSAFG I++   +    D   S+G+ ++ +DS  A++ AI  MNG  L NRQ+ V           R   P ER  AA +R   R   T
Sbjct:   18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVC---DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG----------RFKFPEER--AAEVRTRDRATFT 199          

HSP 2 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 52/185 (28.11%), Postives = 95/185 (51.35%), Query Frame = 2
Query:   95 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD-----------------KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 598
            +R      +V N+   + +E L ELF + GP  +V V +D  +   +G+GFV + + E A  A+  L+   + GK + V +A +                  +KS   G  ++I NLD  ++++ L + FS+FG I +  K+M +   G  +GFG + + SFE +  A++ MNG+ + ++ + V+
Sbjct:  194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSI-SRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVT 374          

HSP 3 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 48/173 (27.75%), Postives = 93/173 (53.76%), Query Frame = 2
Query:  119 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 613
            ++ NLD  +    L+ LF   G +++  V  D   N  +GY +V F S   A+ AI  +N ++L  + + V +    ++++ +V         N+F+ N+  D+D++ L + F  +G    + K++RD  +G S+GFGF+ Y++ EA+  A+  ++G+ +  + + V  A KK
Sbjct:  109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP-TESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PABP5_GORGO (Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.088e-25
Identity = 73/197 (37.06%), Postives = 106/197 (53.81%), Query Frame = 2
Query:  110 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANIRVPRRVAHT 697
            A  YVG+LDP VTE++L++ F  AGP+    + +D VT    GYG+V FR   DA++A+  +N   + GKP R+  +  D +    G  N+FI NLD  +D + L+  FSAFG I++   +    D   S+G+ ++ +DS  A++ AI  MNG  L NRQ+ V           R   P ER  AA +R   R   T
Sbjct:   18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVC---DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG----------RFKFPEER--AAEVRTRDRATFT 199          

HSP 2 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 52/185 (28.11%), Postives = 95/185 (51.35%), Query Frame = 2
Query:   95 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD-----------------KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 598
            +R      +V N+   + +E L ELF + GP  +V V +D  +   +G+GFV + + E A  A+  L+   + GK + V +A +                  +KS   G  ++I NLD  ++++ L + FS+FG I +  K+M +   G  +GFG + + SFE +  A++ MNG+ + ++ + V+
Sbjct:  194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSI-SRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVT 374          

HSP 3 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 48/173 (27.75%), Postives = 93/173 (53.76%), Query Frame = 2
Query:  119 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 613
            ++ NLD  +    L+ LF   G +++  V  D   N  +GY +V F S   A+ AI  +N ++L  + + V +    ++++ +V         N+F+ N+  D+D++ L + F  +G    + K++RD  +G S+GFGF+ Y++ EA+  A+  ++G+ +  + + V  A KK
Sbjct:  109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP-TESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PAP1M_HUMAN (Polyadenylate-binding protein 1-like 2 OS=Homo sapiens GN=PABPC1L2A PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.727e-25
Identity = 65/190 (34.21%), Postives = 112/190 (58.95%), Query Frame = 2
Query:  110 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGERHGTPAERILAANIR 673
            A+ YVG+L P+VTE +L+E F  AGP++++ + +D++T    GY +V ++   DA  A++ LN   + G+P+R+  + +D      G  N+FI NL   +D K LY+ FSAFG I++        D    +G+GF+ +   E+++ AI+ MNG +L  R+I V  +   K+ + ER G  A +  +A+++
Sbjct:    2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVAC---DEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAER-GAWARQSTSADVK 187          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25
Identity = 67/183 (36.61%), Postives = 110/183 (60.11%), Query Frame = 2
Query:   56 PGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 601
            P VG N   +++A+   + + YVG LDP VTE +L+E+F   G V ++ V +D VT    GY +V F +  D + A++ LN   +  +P R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I++    +   +TG S G+GF+ Y++ EA++AAI+ +NG  L ++++ V +
Sbjct:   30 PAVG-NGEQRNNADAANNTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCK--VATNETG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGH 208          

HSP 2 Score: 92.8189 bits (229), Expect = 1.893e-18
Identity = 58/188 (30.85%), Postives = 100/188 (53.19%), Query Frame = 2
Query:  119 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-----------------DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGER 631
            Y  N+DP+VT++   +LF + G + +  + +D      +G+GFV F    +A  A+  L+     G+ + V +A +                 +K +   G NL++ N+    D++ L + F+ FG I T+ KIMR P +G SRGFGF+ Y + E ++ A+  MNG+ L NR + V+ A +KD + ++
Sbjct:  230 YAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDE-DGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLREEFAPFGAI-TSCKIMRAP-SGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQRKDVRRQQ 414          

HSP 3 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 50/184 (27.17%), Postives = 92/184 (50.00%), Query Frame = 2
Query:   98 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 628
            R      ++ NLD  +  + L + F   G +++  V  +   +L  GYGFV + + E A+ AIK +N + L  K + V     +  +  K  +  AN   ++  N+DP+V +      F+ FG I T+  + RD D G S+GFGF++++    +  A++ ++      +++ V+ A KK  + E
Sbjct:  131 RTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNETGSL--GYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKI-TSCVLQRDED-GKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREE 310          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 1.036e-24
Identity = 64/181 (35.36%), Postives = 107/181 (59.12%), Query Frame = 2
Query:  110 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAE 649
            A+ YVG+L   V E  L++ F  AGPV+++ V +D +T    GY +V F+   DA+ A+  +N   +  KPIR+  + +D      G  N+FI NLD  +D K +YDTFSAFG I+ + K+  D + GNS+G+GF+ +++ EA++ +I+ +NG  L  +++ V     +  + +  G  A+
Sbjct:    2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNIL-SCKVATD-EKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAK 180          

HSP 2 Score: 87.8113 bits (216), Expect = 6.089e-17
Identity = 59/183 (32.24%), Postives = 102/183 (55.74%), Query Frame = 2
Query:   89 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK---ASQDKKSLDVGANLF----IGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC-NRQITVSYAYKK 613
            S  R+     ++ NLD  +  + +++ F   G +++  V  D   N  +GYGFV F +EE A+ +I  +N + L GK + V K     + +K L   A LF    + N   D D++ L + F  +G I T+ K+M   D G S+GFGF+++++ EA++AA++A+NG+ +   + + V+ A KK
Sbjct:   83 SLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGN-SKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKI-TSYKVMSKED-GKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKK 262          

HSP 3 Score: 73.9442 bits (180), Expect = 9.099e-13
Identity = 52/186 (27.96%), Postives = 91/186 (48.92%), Query Frame = 2
Query:  119 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKL-YGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 622
            YV N      +E L E F   G + + Y    +     +G+GFV F + E A+ A++ LN   +  GK + V +A                  Q +     G NL++ NLD  +D+  L   FS +G I T+ K+M D + G S+GFGF+ +++   +  A+  +NG+ + ++ + V+ A +K+ +
Sbjct:  186 YVKNFTEDFDDEKLKEFFEPYGKITS-YKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNI-TSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEER 368          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.938e-24
Identity = 70/188 (37.23%), Postives = 109/188 (57.98%), Query Frame = 2
Query:   92 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGERHGTPAE 649
            A + + A+ YVG+L   VTE+LL+  F   GPV+++ + +D+VT    GY +V F    DA  A+  +N   + GK IR+  + +D      G  N+FI NLD  +D K LY+ FSAFG I+++ K+M D D G S+G+ F+ + +  A+D AIE MNG+ L   ++ V  +  +KD + E     +E
Sbjct:    4 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSS-KVMSD-DQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASE 188          

HSP 2 Score: 87.0409 bits (214), Expect = 1.039e-16
Identity = 57/179 (31.84%), Postives = 97/179 (54.19%), Query Frame = 2
Query:   98 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI-------RVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 613
            R+     ++ NLD  +  + L+E F   G +++  V  D   +  +GY FV F+++  AD AI+ +N   L G  +       R ++ ++ +       N++I N   D+D++ L D FS +G  ++  K+M D  +G S+GFGF+S+DS EA+  A+E MNG+ +  + I V  A KK
Sbjct:   94 RSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGS--KGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLS-VKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKK 268          

HSP 3 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 53/190 (27.89%), Postives = 99/190 (52.11%), Query Frame = 2
Query:   92 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD-------KKSLDV----------GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYK 610
            ++ ++    Y+ N    + +E L ++F + G  ++V V  D  +   +G+GFV F S E A  A++ +N   + G+ I V +A +        K+  +           G  L+I NLD  +D++ L + FS+FG I +  K+M++   G S+GFG I + S E +  A+  MNG+ L ++ ++++ A +
Sbjct:  184 SKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSI-SRVKVMQEE--GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQR 369          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 5.143e-24
Identity = 60/177 (33.90%), Postives = 105/177 (59.32%), Query Frame = 2
Query:  107 DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSL-DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERH 634
            D   YVGNLD  +TE++L + F   GP+ N+ +  D+  N +  Y FVE+    DA+ A++ LN  ++    +++N A Q ++S  D   NLF+G+L+ +VD++ L + F  F   ++   +M D  TG+SRG+GF+S+ S + +  A+++M GQ L  R + +++A K+D     +
Sbjct:   74 DRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSG-HVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNNN 248          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.143e-24
Identity = 64/175 (36.57%), Postives = 106/175 (60.57%), Query Frame = 2
Query:  110 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 628
            A+ YVG L+P V+E LL+++F   G V ++ V +D +TN   GY +V F   E    AI+ LN   + GKP R+  + +D      G+ N++I NL P +D K L++TFS FG I+ + K+  D + G SRGFGF+ +++   +  AIEA++G  + ++++ V+ +  KKD + +
Sbjct:   38 ASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNIL-SCKVATD-ENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSK 210          

HSP 2 Score: 98.5969 bits (244), Expect = 3.450e-20
Identity = 65/200 (32.50%), Postives = 104/200 (52.00%), Query Frame = 2
Query:  119 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV-----------------GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAAN 667
            YV N+D + ++E   ELF + G + +  + KD    L +G+GFV F     A  A+  LN ++  G+ + V +A +  + L                   G NLF+ NLD  +D++ L + F+ FG I T+ K+MRD +TGNSRGFGF+ + + E +  AI   N Q +  + + V+ A +K+    R    A++I A N
Sbjct:  222 YVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKL-RGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTI-TSAKVMRD-ETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKEV---RRNQLAQQIQARN 415          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PAP1A_DICDI (Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.773e-24
Identity = 64/174 (36.78%), Postives = 103/174 (59.20%), Query Frame = 2
Query:  110 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 628
            ++ YVG+L P+V+E+ L+E+F Q G V N+ V +D  T     Y +V + +  DA+ A+  LN   + GK  R+  + +D      G  N+FI NLD  +D K LYDTFSAFG I+ + K++ D D  +S+GFGF+ Y++ E++D AI  +NG  +  +++ V        +G+
Sbjct:   10 SSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNIL-SCKVVTD-DGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQ 181          

HSP 2 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 57/193 (29.53%), Postives = 94/193 (48.70%), Query Frame = 2
Query:   89 SAERNQDA-----TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI-------RVNKASQDKKSLDV---GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 622
            S ER Q         +  NL   V  + L EL  Q G + N+ +  D      +G+GF  F S E A   ++  N    +GKPI       ++ + ++ K + +    G NL+I N+D  +D   L + FS FG I T+  +M+D     S+GFGF+ Y + + +  A+  MNG+ +  + + V+ A +KD +
Sbjct:  176 SKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADD-KGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTI-TSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVALAQRKDIR 366          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.401e-21
Identity = 62/173 (35.84%), Postives = 99/173 (57.23%), Query Frame = 2
Query:  104 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 613
            Q  T YVGNL   VTE L+ +LF Q GP  +  +  +  +N    Y FVEF    DA  A+  +N  K+ GK ++VN A   S  KK      ++F+G+L P++  + +   F+ FG I ++ ++++D  TG S+G+GF+S+ +   ++ AI  M GQ+L  RQI  ++A +K
Sbjct:    7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN--DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI-SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 176          
The following BLAST results are available for this feature:
BLAST of FC930764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
PABP5_HUMAN2.088e-2537.06Polyadenylate-binding protein 5 OS=Homo sapiens GN... [more]
PABP5_GORGO2.088e-2537.06Polyadenylate-binding protein 5 OS=Gorilla gorilla... [more]
PAP1M_HUMAN2.727e-2534.21Polyadenylate-binding protein 1-like 2 OS=Homo sap... [more]
PABP_USTMA4.652e-2536.61Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_DROME1.036e-2435.36Polyadenylate-binding protein OS=Drosophila melano... [more]
PAB4L_HUMAN3.938e-2437.23Polyadenylate-binding protein 4-like OS=Homo sapie... [more]
PUB1_YEAST5.143e-2433.90Nuclear and cytoplasmic polyadenylated RNA-binding... [more]
PABP_ASHGO5.143e-2436.57Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PAP1A_DICDI8.773e-2436.78Polyadenylate-binding protein 1-A OS=Dictyostelium... [more]
TIAR_HUMAN1.401e-2135.84Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC34108G08EF PostHarvP1 Citrus clementina cDNA clone C34108G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930764 ID=FC930764; Name=FC930764; organism=Citrus clementina; type=EST; length=704bp
GAAGTAGAAGAAGAAGAAGTAATAACGAGTAAAAGGCATGACCACTCGAA
TCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGAGA
AATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACTGA
GGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTTGTTAATGTGT
ATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTGTA
GAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAATAT
GATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGACA
AAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACCCA
GATGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTCAT
TGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCGTG
GTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTATT
GAGGCAATGAATGGCCAATACCTTTGCAACCGTCAAATTACTGTCTCATA
TGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGGCAGAGA
GAATTTTGGCGGCAAACATCCGAGTTCCCAGAAGAGTAGCCCACACTTTA
TTTG
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