FC930764
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 2.314e-16 Identity = 64/210 (30.48%), Postives = 103/210 (49.05%), Query Frame = 2 Query: 50 IAPGVGANLLGQHSAERN----------QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI-------RVNKASQD---KKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 613 I+P + +N G N Q T ++G L+P VTE + +++ G V V + ++R T ++ GY FVEF S +A A+ + N KPI ++N AS +KS+ + ++F+G+L P+V+E +Y F++ + KIM DP T SRG+GF+ + +A+ M GQ +R I V A K Sbjct: 63 ISPNMASNESGNSENTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMNN------KPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPK 266
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: RBM7_MOUSE (RNA-binding protein 7 OS=Mus musculus GN=Rbm7 PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.314e-16 Identity = 47/108 (43.52%), Postives = 67/108 (62.04%), Query Frame = 2 Query: 89 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN-KASQDKKSLDVGANL---FIGNLDP 400 +A D T +VGNL+ +VTEELL+ELF QAGPV+ V +PKD+ L Q + FV F+ E YA+ +LN IKL+G+PI++ ++ S D + +GNL P Sbjct: 3 AAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQ-FAFVNFKHEVSVPYAMNLLNGIKLFGRPIKIQFRSGSSHASQDASVSYPQHHVGNLSP 109
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 2.314e-16 Identity = 64/193 (33.16%), Postives = 99/193 (51.30%), Query Frame = 2 Query: 122 VGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQ-GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTKGERHGTPAERILAANIRVPRRVA 691 V L +T+E L LF G + + + +D++T GYGFV + +DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS +G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A K H ++ + N R P +A Sbjct: 70 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK-VNHTILSQLYQSPNRRYPGPLA 259
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PUF60_RAT (Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60 PE=2 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 3.947e-16 Identity = 56/184 (30.43%), Postives = 97/184 (52.72%), Query Frame = 2 Query: 83 QHSAERNQDATA-----YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 574 Q A + Q A A YVG++ ++ E+ + + F GP+ ++ + D VT H+G+ FVE+ E A A++ +N + L G+ I+V + S Q + +D A +++ ++ D+ + + F AFG I + + RDP TG +G+GFI Y+ ++S A+ +MN GQYL Sbjct: 120 QSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 302
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PUF60_PONAB (Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.947e-16 Identity = 56/184 (30.43%), Postives = 97/184 (52.72%), Query Frame = 2 Query: 83 QHSAERNQDATA-----YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 574 Q A + Q A A YVG++ ++ E+ + + F GP+ ++ + D VT H+G+ FVE+ E A A++ +N + L G+ I+V + S Q + +D A +++ ++ D+ + + F AFG I + + RDP TG +G+GFI Y+ ++S A+ +MN GQYL Sbjct: 114 QSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 296
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PUF60_MOUSE (Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 3.947e-16 Identity = 56/184 (30.43%), Postives = 97/184 (52.72%), Query Frame = 2 Query: 83 QHSAERNQDATA-----YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 574 Q A + Q A A YVG++ ++ E+ + + F GP+ ++ + D VT H+G+ FVE+ E A A++ +N + L G+ I+V + S Q + +D A +++ ++ D+ + + F AFG I + + RDP TG +G+GFI Y+ ++S A+ +MN GQYL Sbjct: 120 QSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 302
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PUF60_HUMAN (Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.947e-16 Identity = 56/184 (30.43%), Postives = 97/184 (52.72%), Query Frame = 2 Query: 83 QHSAERNQDATA-----YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 574 Q A + Q A A YVG++ ++ E+ + + F GP+ ++ + D VT H+G+ FVE+ E A A++ +N + L G+ I+V + S Q + +D A +++ ++ D+ + + F AFG I + + RDP TG +G+GFI Y+ ++S A+ +MN GQYL Sbjct: 115 QSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 297
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PUF60_BOVIN (Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.947e-16 Identity = 56/184 (30.43%), Postives = 97/184 (52.72%), Query Frame = 2 Query: 83 QHSAERNQDATA-----YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 574 Q A + Q A A YVG++ ++ E+ + + F GP+ ++ + D VT H+G+ FVE+ E A A++ +N + L G+ I+V + S Q + +D A +++ ++ D+ + + F AFG I + + RDP TG +G+GFI Y+ ++S A+ +MN GQYL Sbjct: 86 QSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 268
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16 Identity = 56/163 (34.36%), Postives = 87/163 (53.37%), Query Frame = 2 Query: 122 VGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 604 V L +T++ L LF G V + + +D+V GYGFV + + +DA+ AI LN ++L K I+V+ A +S+ ANL+I L + +K + D F FG I+ N +++ D TG SRG FI +D ++ AI + NG + ITV +A Sbjct: 24 VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVARPSSESIK-DANLYISGLPRTMTQKDVEDMFLPFGRII-NSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFA 184
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16 Identity = 56/163 (34.36%), Postives = 87/163 (53.37%), Query Frame = 2 Query: 122 VGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 604 V L +T++ L LF G V + + +D+V GYGFV + + +DA+ AI LN ++L K I+V+ A + + ANL+I L + +K + D FS FG I+ N +++ D TG SRG FI +D ++ AI + NG + ITV +A Sbjct: 24 VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIK-DANLYISGLPRTMTQKDVEDMFSRFGRII-NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184 The following BLAST results are available for this feature:
BLAST of FC930764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 192
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930764 ID=FC930764; Name=FC930764; organism=Citrus clementina; type=EST; length=704bpback to top |