FC930764

Overview
NameFC930764
Unique NameFC930764
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930764_ssr6 microsatellite FC930764_ssr6:6..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4556 contig Ccv1_Contig4556:81..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.314e-16
Identity = 64/210 (30.48%), Postives = 103/210 (49.05%), Query Frame = 2
Query:   50 IAPGVGANLLGQHSAERN----------QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI-------RVNKASQD---KKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 613
            I+P + +N  G      N          Q  T ++G L+P VTE  + +++   G  V V + ++R T ++ GY FVEF S  +A  A+ + N      KPI       ++N AS     +KS+   +  ++F+G+L P+V+E  +Y  F++      + KIM DP T  SRG+GF+ +       +A+  M GQ   +R I V  A  K
Sbjct:   63 ISPNMASNESGNSENTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMNN------KPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPK 266          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: RBM7_MOUSE (RNA-binding protein 7 OS=Mus musculus GN=Rbm7 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.314e-16
Identity = 47/108 (43.52%), Postives = 67/108 (62.04%), Query Frame = 2
Query:   89 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN-KASQDKKSLDVGANL---FIGNLDP 400
            +A    D T +VGNL+ +VTEELL+ELF QAGPV+ V +PKD+   L Q + FV F+ E    YA+ +LN IKL+G+PI++  ++     S D   +     +GNL P
Sbjct:    3 AAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQ-FAFVNFKHEVSVPYAMNLLNGIKLFGRPIKIQFRSGSSHASQDASVSYPQHHVGNLSP 109          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.314e-16
Identity = 64/193 (33.16%), Postives = 99/193 (51.30%), Query Frame = 2
Query:  122 VGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQ-GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTKGERHGTPAERILAANIRVPRRVA 691
            V  L   +T+E L  LF   G + +  + +D++T     GYGFV +   +DA+ AI  LN ++L  K I+V+ A     S+   ANL++  L   + +K L   FS +G I+T+ +I+ D  TG SRG GFI +D    ++ AI+ +NGQ        ITV +A     K   H   ++   + N R P  +A
Sbjct:   70 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK-VNHTILSQLYQSPNRRYPGPLA 259          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PUF60_RAT (Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.947e-16
Identity = 56/184 (30.43%), Postives = 97/184 (52.72%), Query Frame = 2
Query:   83 QHSAERNQDATA-----YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 574
            Q  A + Q A A     YVG++  ++ E+ + + F   GP+ ++ +  D VT  H+G+ FVE+   E A  A++ +N + L G+ I+V + S   Q +  +D  A        +++ ++  D+ +  +   F AFG I  +  + RDP TG  +G+GFI Y+  ++S  A+ +MN     GQYL
Sbjct:  120 QSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 302          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PUF60_PONAB (Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.947e-16
Identity = 56/184 (30.43%), Postives = 97/184 (52.72%), Query Frame = 2
Query:   83 QHSAERNQDATA-----YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 574
            Q  A + Q A A     YVG++  ++ E+ + + F   GP+ ++ +  D VT  H+G+ FVE+   E A  A++ +N + L G+ I+V + S   Q +  +D  A        +++ ++  D+ +  +   F AFG I  +  + RDP TG  +G+GFI Y+  ++S  A+ +MN     GQYL
Sbjct:  114 QSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 296          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PUF60_MOUSE (Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.947e-16
Identity = 56/184 (30.43%), Postives = 97/184 (52.72%), Query Frame = 2
Query:   83 QHSAERNQDATA-----YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 574
            Q  A + Q A A     YVG++  ++ E+ + + F   GP+ ++ +  D VT  H+G+ FVE+   E A  A++ +N + L G+ I+V + S   Q +  +D  A        +++ ++  D+ +  +   F AFG I  +  + RDP TG  +G+GFI Y+  ++S  A+ +MN     GQYL
Sbjct:  120 QSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 302          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PUF60_HUMAN (Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.947e-16
Identity = 56/184 (30.43%), Postives = 97/184 (52.72%), Query Frame = 2
Query:   83 QHSAERNQDATA-----YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 574
            Q  A + Q A A     YVG++  ++ E+ + + F   GP+ ++ +  D VT  H+G+ FVE+   E A  A++ +N + L G+ I+V + S   Q +  +D  A        +++ ++  D+ +  +   F AFG I  +  + RDP TG  +G+GFI Y+  ++S  A+ +MN     GQYL
Sbjct:  115 QSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 297          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PUF60_BOVIN (Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.947e-16
Identity = 56/184 (30.43%), Postives = 97/184 (52.72%), Query Frame = 2
Query:   83 QHSAERNQDATA-----YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 574
            Q  A + Q A A     YVG++  ++ E+ + + F   GP+ ++ +  D VT  H+G+ FVE+   E A  A++ +N + L G+ I+V + S   Q +  +D  A        +++ ++  D+ +  +   F AFG I  +  + RDP TG  +G+GFI Y+  ++S  A+ +MN     GQYL
Sbjct:   86 QSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 268          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 56/163 (34.36%), Postives = 87/163 (53.37%), Query Frame = 2
Query:  122 VGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 604
            V  L   +T++ L  LF   G V +  + +D+V     GYGFV + + +DA+ AI  LN ++L  K I+V+ A    +S+   ANL+I  L   + +K + D F  FG I+ N +++ D  TG SRG  FI +D    ++ AI + NG      +  ITV +A
Sbjct:   24 VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVARPSSESIK-DANLYISGLPRTMTQKDVEDMFLPFGRII-NSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFA 184          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 56/163 (34.36%), Postives = 87/163 (53.37%), Query Frame = 2
Query:  122 VGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 604
            V  L   +T++ L  LF   G V +  + +D+V     GYGFV + + +DA+ AI  LN ++L  K I+V+ A    + +   ANL+I  L   + +K + D FS FG I+ N +++ D  TG SRG  FI +D    ++ AI + NG      +  ITV +A
Sbjct:   24 VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIK-DANLYISGLPRTMTQKDVEDMFSRFGRII-NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184          
The following BLAST results are available for this feature:
BLAST of FC930764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
YG41_SCHPO2.314e-1630.48Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
RBM7_MOUSE2.314e-1643.52RNA-binding protein 7 OS=Mus musculus GN=Rbm7 PE=1... [more]
ELAV2_XENLA2.314e-1633.16ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE... [more]
PUF60_RAT3.947e-1630.43Poly(U)-binding-splicing factor PUF60 OS=Rattus no... [more]
PUF60_PONAB3.947e-1630.43Poly(U)-binding-splicing factor PUF60 OS=Pongo abe... [more]
PUF60_MOUSE3.947e-1630.43Poly(U)-binding-splicing factor PUF60 OS=Mus muscu... [more]
PUF60_HUMAN3.947e-1630.43Poly(U)-binding-splicing factor PUF60 OS=Homo sapi... [more]
PUF60_BOVIN3.947e-1630.43Poly(U)-binding-splicing factor PUF60 OS=Bos tauru... [more]
ELAV1_XENTR5.155e-1634.36ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl... [more]
ELAV1_HUMAN5.155e-1634.36ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC34108G08EF PostHarvP1 Citrus clementina cDNA clone C34108G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930764 ID=FC930764; Name=FC930764; organism=Citrus clementina; type=EST; length=704bp
GAAGTAGAAGAAGAAGAAGTAATAACGAGTAAAAGGCATGACCACTCGAA
TCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGAGA
AATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACTGA
GGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTTGTTAATGTGT
ATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTGTA
GAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAATAT
GATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGACA
AAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACCCA
GATGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTCAT
TGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCGTG
GTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTATT
GAGGCAATGAATGGCCAATACCTTTGCAACCGTCAAATTACTGTCTCATA
TGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGGCAGAGA
GAATTTTGGCGGCAAACATCCGAGTTCCCAGAAGAGTAGCCCACACTTTA
TTTG
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