FC930767

Overview
NameFC930767
Unique NameFC930767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11318 contig Ccv1_Contig11318:467..1171. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930767 vs. ExPASy Swiss-Prot
Match: IREB2_RAT (Iron-responsive element-binding protein 2 OS=Rattus norvegicus GN=Ireb2 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.303e-32
Identity = 65/137 (47.45%), Postives = 95/137 (69.34%), Query Frame = 3
Query:   57 AAEHPFKEILTALPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDIEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR 467
            +A + F+ ++  L    G    KF+++P L   + + LPYSIR+LLE+A+RNCD F +KKED+  I+DW+      VE+PF PARV+LQDFTG+PA+VD A MR+A+  LG D  K++P  P DL +DHS+Q+D ++
Sbjct:    5 SAGYTFEYLIETL---NGSSQKKFFNVPKLGGTKYDILPYSIRVLLEAAVRNCDGFLMKKEDVINILDWKTKQ-SNVEVPFFPARVVLQDFTGIPAMVDFAAMREAVKTLGGDPKKVHPACPTDLTVDHSLQIDFSK 137          
BLAST of FC930767 vs. ExPASy Swiss-Prot
Match: IREB2_PIG (Iron-responsive element-binding protein 2 OS=Sus scrofa GN=IREB2 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.131e-32
Identity = 61/115 (53.04%), Postives = 84/115 (73.04%), Query Frame = 3
Query:  123 KFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDIEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR 467
            KF+++P L   + + LPYSIR+LLE+A+RNCD F +KKED+  I+DW+      VE+PF P RVLLQDFTG+PA+VD A MR+A+  LG D  K++P  P DL +DHS+Q+D  +
Sbjct:   24 KFFNVPRLGGTKYDVLPYSIRVLLEAAVRNCDGFLMKKEDVMNILDWKTKQ-SNVEVPFFPGRVLLQDFTGIPAMVDFAAMREAVKTLGGDPKKVHPACPTDLTVDHSLQIDFNK 137          
BLAST of FC930767 vs. ExPASy Swiss-Prot
Match: IREB2_HUMAN (Iron-responsive element-binding protein 2 OS=Homo sapiens GN=IREB2 PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.816e-30
Identity = 61/115 (53.04%), Postives = 84/115 (73.04%), Query Frame = 3
Query:  123 KFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDIEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR 467
            KF+ +  L   + + LPYSIR+LLE+A+RNCD F +KKED+  I+DW+      VE+PF PARVLLQDFTG+PA+VD A MR+A+  LG D  K++P  P DL +DHS+Q+D ++
Sbjct:   24 KFFDVSKLGT-KYDVLPYSIRVLLEAAVRNCDGFLMKKEDVMNILDWKTKQ-SNVEVPFFPARVLLQDFTGIPAMVDFAAMREAVKTLGGDPEKVHPACPTDLTVDHSLQIDFSK 136          
BLAST of FC930767 vs. ExPASy Swiss-Prot
Match: IREB2_CHICK (Iron-responsive element-binding protein 2 OS=Gallus gallus GN=IREB2 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.397e-29
Identity = 59/115 (51.30%), Postives = 81/115 (70.43%), Query Frame = 3
Query:  123 KFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDIEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR 467
            +FY++  L   + + LPYSIR+L ES+IRNCD F VK+ D   I+DW+      VE+PF PARV+LQDFTG+PA+VD A MR+A+   G D  K+NP  P DL +DHS+Q+D ++
Sbjct:   24 RFYNVSKLGGTKYDVLPYSIRVLFESSIRNCDGFLVKETDAMNILDWKTKQ-NDVEVPFCPARVVLQDFTGIPAMVDFAAMREAVRNAGGDPVKVNPACPTDLTVDHSLQIDFSK 137          
BLAST of FC930767 vs. ExPASy Swiss-Prot
Match: IREB2_XENLA (Iron-responsive element-binding protein 2 OS=Xenopus laevis GN=ireb2 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.442e-28
Identity = 60/135 (44.44%), Postives = 88/135 (65.19%), Query Frame = 3
Query:   63 EHPFKEILTALPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDIEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR 467
            E+PF  ++  L    G     F+++  L     + LPY IR++LE+ +RNCD   VK++D   I++W+     + EIPF PARV+LQDFTG+PA+VD A MRDA++K G D  ++NP  P DL+ DHS+Q+D T+
Sbjct:    3 ENPFHYLVETL---SGTSDKTFFNVSKLKATEYDSLPYCIRVVLEAVVRNCDGVLVKEQDAFNILNWKTKCEFK-EIPFLPARVMLQDFTGIPAMVDFAAMRDAISKFGKDPKQVNPACPTDLIADHSLQLDFTK 133          

HSP 2 Score: 73.9442 bits (180), Expect = 3.861e-16
Identity = 35/67 (52.24%), Postives = 43/67 (64.18%), Query Frame = 3
Query:  459 VTRSENAVKANMEFEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTTACYTP 659
            +   E A+K+ +E EF RNKER  F KW S AF N+ V+PP +G VHQVNLE+L RVV     C  P
Sbjct:  202 IAEPETALKS-LEIEFNRNKERLQFFKWCSKAFQNVAVIPPETGTVHQVNLEFLSRVVMEEKGCIYP 267          

HSP 3 Score: 31.5722 bits (70), Expect = 3.861e-16
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 2
Query:  644 GMLYPDSVVGTDSHT 688
            G +YPDSV+GTDSHT
Sbjct:  263 GCIYPDSVLGTDSHT 277          
BLAST of FC930767 vs. ExPASy Swiss-Prot
Match: IREB2_XENTR (Iron-responsive element-binding protein 2 OS=Xenopus tropicalis GN=ireb2 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.667e-28
Identity = 60/135 (44.44%), Postives = 89/135 (65.93%), Query Frame = 3
Query:   63 EHPFKEILTALPKPGGGEFGKFYSLPALNDPRIEKLPYSIRILLESAIRNCDNFQVKKEDIEKIIDWENSAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR 467
            E+PF  ++  L    G     F+++  L     + LPY IR++LE+ +RNCD   VK++D   I++W+ +   + EIPF PARV+LQDFTG+PA+VD A MRDA++K G D  ++NP  P DL+ DHS+Q+D T+
Sbjct:    3 ENPFHYLVEPL---SGTSDKTFFNVSKLKATEYDSLPYCIRVVLEAVVRNCDGVLVKEQDAFNILNWKATCEFK-EIPFLPARVMLQDFTGIPAMVDFAAMRDAISKFGRDPKQVNPACPTDLIADHSLQLDFTK 133          

HSP 2 Score: 70.8626 bits (172), Expect = 2.416e-15
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 3
Query:  459 VTRSENAVKANMEFEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVV 632
            +   E A+K+ +E EF RNKER  F KW + AFHN+ V+PP +G VHQVNLE+L RVV
Sbjct:  204 IAEPEAALKS-LEIEFNRNKERLQFFKWCTKAFHNVAVIPPETGTVHQVNLEFLSRVV 260          

HSP 3 Score: 31.9574 bits (71), Expect = 2.416e-15
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 2
Query:  644 GMLYPDSVVGTDSHT 688
            G +YPDSV+GTDSHT
Sbjct:  265 GFIYPDSVLGTDSHT 279          
BLAST of FC930767 vs. ExPASy Swiss-Prot
Match: ACOC_CUCMC (Aconitate hydratase (Fragment) OS=Cucumis melo var. conomon GN=ACO PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.075e-25
Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 3
Query:  465 RSENAVKANMEFEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTTACYTP 659
            ++ENAV+ANME EF+RN+ERF FLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNT     P
Sbjct:    4 KTENAVQANMELEFKRNRERFGFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGLLYP 68          
The following BLAST results are available for this feature:
BLAST of FC930767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
IREB2_RAT2.303e-3247.45Iron-responsive element-binding protein 2 OS=Rattu... [more]
IREB2_PIG5.131e-3253.04Iron-responsive element-binding protein 2 OS=Sus s... [more]
IREB2_HUMAN2.816e-3053.04Iron-responsive element-binding protein 2 OS=Homo ... [more]
IREB2_CHICK1.397e-2951.30Iron-responsive element-binding protein 2 OS=Gallu... [more]
IREB2_XENLA3.442e-2844.44Iron-responsive element-binding protein 2 OS=Xenop... [more]
IREB2_XENTR7.667e-2844.44Iron-responsive element-binding protein 2 OS=Xenop... [more]
ACOC_CUCMC6.075e-2581.54Aconitate hydratase (Fragment) OS=Cucumis melo var... [more]

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Properties
Property NameValue
Genbank descriptionC34108G11EF PostHarvP1 Citrus clementina cDNA clone C34108G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930767 ID=FC930767; Name=FC930767; organism=Citrus clementina; type=EST; length=704bp
AGATCAGAACCGTTGCTCCTGCCATCGAACGGCTCGAACGCGCCTTTGCT
ACTATGGCTGCTGAACATCCATTCAAGGAGATCTTGACCGCTCTTCCAAA
GCCAGGAGGTGGCGAGTTTGGAAAGTTCTATAGCCTTCCTGCACTCAATG
ATCCAAGAATTGAGAAGCTGCCATACTCTATCAGAATCCTGCTTGAATCT
GCTATTCGTAATTGTGACAACTTTCAAGTTAAGAAGGAAGATATCGAGAA
AATTATTGACTGGGAAAATTCTGCACCAAAGCAAGTTGAAATTCCCTTCA
AGCCTGCTCGTGTATTGTTGCAGGATTTTACTGGAGTACCAGCCGTGGTT
GACCTTGCCTGCATGCGTGATGCTATGAACAAGCTTGGCAGTGATTCCAA
CAAGATCAATCCTCTTGTTCCTGTAGATCTTGTCATTGATCATTCGGTTC
AGGTTGATGTAACAAGATCGGAAAATGCAGTTAAGGCAAATATGGAATTT
GAATTTCAGAGGAACAAGGAGAGATTCGCTTTCCTCAAATGGGGATCTAG
TGCTTTCCATAACATGCTTGTTGTTCCTCCTGGTTCTGGTATTGTGCATC
AGGTCAATCTTGAATATCTGGGACGGGTTGTTTTCAATACCACGGCATGC
TATACCCCGACAGTGTGGTTGGTACTGATTCTCATACACCATGATTGATG
GGTT
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