FC930772

Overview
NameFC930772
Unique NameFC930772
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length441
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13662 contig Ccv1_Contig13662:36..476. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA_LACSA (Glutamine synthetase OS=Lactuca sativa PE=2 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 1.857e-50
Identity = 93/99 (93.94%), Postives = 97/99 (97.98%), Query Frame = 3
Query:  144 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 440
            TDKIIAEYIWIGGSGMD+RSKARTL GPVSDPS+LPKWNYDGSSTGQAPGEDSEVI+YPQAIFKDPFRRGN+ILVMCDAYTPAGEPIPTNKR AAAKIF
Sbjct:   16 TDKIIAEYIWIGGSGMDLRSKARTLSGPVSDPSELPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNHILVMCDAYTPAGEPIPTNKRAAAAKIF 114          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA3_MAIZE (Glutamine synthetase root isozyme 3 OS=Zea mays GN=GLN4 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 3.167e-50
Identity = 92/99 (92.93%), Postives = 96/99 (96.97%), Query Frame = 3
Query:  144 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 440
            T+KIIAEYIWIGGSGMD+RSKARTL GPV+DPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCD YTPAGEPIPTNKR+ AAKIF
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYNAAKIF 114          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLN13_ARATH (Glutamine synthetase cytosolic isozyme 1-3 OS=Arabidopsis thaliana GN=GLN1-3 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 3.167e-50
Identity = 92/99 (92.93%), Postives = 96/99 (96.97%), Query Frame = 3
Query:  144 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 440
            T KIIAEYIWIGGSGMD+RSKARTLPGPV+DPSKLPKWNYDGSSTGQA GEDSEVILYPQAIFKDPFR+GNNILVMCDAYTPAG+PIPTNKRH AAKIF
Sbjct:   16 TGKIIAEYIWIGGSGMDIRSKARTLPGPVTDPSKLPKWNYDGSSTGQAAGEDSEVILYPQAIFKDPFRKGNNILVMCDAYTPAGDPIPTNKRHNAAKIF 114          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA2_SOYBN (Glutamine synthetase cytosolic isozyme 2 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 4.136e-50
Identity = 91/99 (91.92%), Postives = 96/99 (96.97%), Query Frame = 3
Query:  144 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 440
            TDK+IAEYIW+GGSGMDMRSKARTL GPV DPSKLPKWNYDGSSTGQAPG+DSEVILYPQAIFKDPFRRG+NILVMCDAYTPAGEPIPTNKR+ AAKIF
Sbjct:   16 TDKVIAEYIWVGGSGMDMRSKARTLSGPVKDPSKLPKWNYDGSSTGQAPGQDSEVILYPQAIFKDPFRRGSNILVMCDAYTPAGEPIPTNKRNNAAKIF 114          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA1_PEA (Glutamine synthetase nodule isozyme OS=Pisum sativum GN=GS1 PE=2 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 4.136e-50
Identity = 89/99 (89.90%), Postives = 98/99 (98.99%), Query Frame = 3
Query:  144 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 440
            T+KIIAEYIWIGGSG+D+R KARTLPGPV+DPS+LPKWNYDGSSTGQAPG+DSEVILYPQAIFKDPFRRGN+ILVMCDAY+PAGEPIPTNKRHAAAK+F
Sbjct:   15 TEKIIAEYIWIGGSGLDLRCKARTLPGPVTDPSELPKWNYDGSSTGQAPGQDSEVILYPQAIFKDPFRRGNHILVMCDAYSPAGEPIPTNKRHAAAKVF 113          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA_LUPLU (Glutamine synthetase nodule isozyme OS=Lupinus luteus PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 5.402e-50
Identity = 90/99 (90.91%), Postives = 97/99 (97.98%), Query Frame = 3
Query:  144 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 440
            T+KIIAEYIW+GGSG+D+RSKARTL GPV+DPSKLPKWNYDGSSTGQAPG+DSEVIL+PQAIFKDPFRRGNNILVMCD YTPAGEPIPTNKRHAAAKIF
Sbjct:   16 TEKIIAEYIWVGGSGVDLRSKARTLSGPVNDPSKLPKWNYDGSSTGQAPGKDSEVILWPQAIFKDPFRRGNNILVMCDTYTPAGEPIPTNKRHAAAKIF 114          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA3_PHAVU (Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=Gln-gamma PE=2 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 7.056e-50
Identity = 89/99 (89.90%), Postives = 95/99 (95.96%), Query Frame = 3
Query:  144 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 440
            T+++IAEYIW+GGSGMDMRSKARTL GPV DPSKLPKWNYDGSSTGQAPG+DSEVILYPQ IF+DPFRRGNNILVMCDAYTPAGEPIPTNKRH AAKIF
Sbjct:   16 TERVIAEYIWVGGSGMDMRSKARTLSGPVKDPSKLPKWNYDGSSTGQAPGQDSEVILYPQTIFRDPFRRGNNILVMCDAYTPAGEPIPTNKRHNAAKIF 114          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA1_PHAVU (Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.204e-49
Identity = 88/99 (88.89%), Postives = 97/99 (97.98%), Query Frame = 3
Query:  144 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 440
            T+K+IAEYIWIGGSG+D+RSKARTLPGPV +PS+LPKWNYDGSSTGQAPG+DSEVI+YPQAIFKDPFRRGNNILV+CDAYTPAGEPIPTNKRH AAKIF
Sbjct:   16 TEKVIAEYIWIGGSGLDLRSKARTLPGPVKNPSELPKWNYDGSSTGQAPGQDSEVIIYPQAIFKDPFRRGNNILVICDAYTPAGEPIPTNKRHNAAKIF 114          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA3_MEDSA (Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 4.573e-49
Identity = 87/99 (87.88%), Postives = 96/99 (96.97%), Query Frame = 3
Query:  144 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 440
            ++KIIAEYIW+GGSGMD+RSKARTLPGPVSDP+KLPKWNYDGSST QAPG+DSEVILYPQAIFKDPFR+GNNILV+CD YTPAGEP+PTNKRH AAKIF
Sbjct:   16 SEKIIAEYIWVGGSGMDLRSKARTLPGPVSDPAKLPKWNYDGSSTNQAPGQDSEVILYPQAIFKDPFRQGNNILVICDVYTPAGEPLPTNKRHNAAKIF 114          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA1_VITVI (Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 5.973e-49
Identity = 89/99 (89.90%), Postives = 94/99 (94.95%), Query Frame = 3
Query:  144 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 440
            T+K+I EYIW+GGSGMD+RSKARTL GPVSDP+KLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCD YTPAGEPIPTNKR  AAKIF
Sbjct:   16 TEKVIVEYIWVGGSGMDLRSKARTLSGPVSDPAKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDTYTPAGEPIPTNKRCNAAKIF 114          
The following BLAST results are available for this feature:
BLAST of FC930772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
GLNA_LACSA1.857e-5093.94Glutamine synthetase OS=Lactuca sativa PE=2 SV=2[more]
GLNA3_MAIZE3.167e-5092.93Glutamine synthetase root isozyme 3 OS=Zea mays GN... [more]
GLN13_ARATH3.167e-5092.93Glutamine synthetase cytosolic isozyme 1-3 OS=Arab... [more]
GLNA2_SOYBN4.136e-5091.92Glutamine synthetase cytosolic isozyme 2 OS=Glycin... [more]
GLNA1_PEA4.136e-5089.90Glutamine synthetase nodule isozyme OS=Pisum sativ... [more]
GLNA_LUPLU5.402e-5090.91Glutamine synthetase nodule isozyme OS=Lupinus lut... [more]
GLNA3_PHAVU7.056e-5089.90Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=... [more]
GLNA1_PHAVU1.204e-4988.89Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE... [more]
GLNA3_MEDSA4.573e-4987.88Glutamine synthetase nodule isozyme OS=Medicago sa... [more]
GLNA1_VITVI5.973e-4989.90Glutamine synthetase cytosolic isozyme 1 OS=Vitis ... [more]

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Properties
Property NameValue
Genbank descriptionC34108H05EF PostHarvP1 Citrus clementina cDNA clone C34108H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930772 ID=FC930772; Name=FC930772; organism=Citrus clementina; type=EST; length=441bp
GGTTCACGTCTCTGTGTAGCACATTAACATCCCTTCAATCACAGCAATCT
CATTACCAGTTTCTTTGTTGTGTTAAGAGACTAAAGAGTCTTCGAAACAT
GTCTCTGCTCTCAGATCTCCTTAACCTTAACCTCTCAGAATCCACTGACA
AGATCATCGCTGAGTACATATGGATCGGTGGATCTGGCATGGACATGAGG
AGCAAAGCAAGGACTCTTCCCGGTCCCGTTAGTGATCCTTCCAAGCTGCC
TAAGTGGAATTATGATGGTTCCAGCACAGGCCAAGCACCTGGAGAAGATA
GTGAAGTGATCCTCTATCCTCAAGCTATTTTCAAGGATCCATTCAGGAGA
GGCAACAATATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGAGAACC
AATTCCAACAAACAAAAGACATGCAGCTGCCAAGATTTTCA
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