FC930772

Overview
NameFC930772
Unique NameFC930772
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length441
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13662 contig Ccv1_Contig13662:36..476. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA3_LUPAN (Glutamine synthetase nodule isozyme (Fragment) OS=Lupinus angustifolius PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 1.019e-48
Identity = 87/99 (87.88%), Postives = 97/99 (97.98%), Query Frame = 3
Query:  144 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 440
            T+KIIAEYIW+GGSG+D+RSKARTL GPV+DPSKLPKWNYDGSSTGQAPG+DSEVIL+PQAIFKDPFRRGNNILV+CD YTP+G+PIPTNKRHAAAKIF
Sbjct:   16 TEKIIAEYIWVGGSGVDLRSKARTLSGPVNDPSKLPKWNYDGSSTGQAPGKDSEVILWPQAIFKDPFRRGNNILVICDTYTPSGKPIPTNKRHAAAKIF 114          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA2_PHAVU (Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 1.019e-48
Identity = 87/99 (87.88%), Postives = 95/99 (95.96%), Query Frame = 3
Query:  144 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 440
            T+KIIAEYIW+GGSGMD+RSKARTLPGPV DP+KLPKWNYDGSST QAPG+DSEVILYPQAIFKDPFRRGNNILV+CD YTPAGEP+PTNKR+ AAKIF
Sbjct:   16 TEKIIAEYIWVGGSGMDLRSKARTLPGPVDDPAKLPKWNYDGSSTDQAPGDDSEVILYPQAIFKDPFRRGNNILVICDVYTPAGEPLPTNKRYDAAKIF 114          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA3_PEA (Glutamine synthetase root isozyme A OS=Pisum sativum GN=GS3A PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.331e-48
Identity = 87/99 (87.88%), Postives = 96/99 (96.97%), Query Frame = 3
Query:  144 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 440
            T+KIIAEYIW+GGSG+D+RSKARTLPGPVSDP+KLPKWNYDGSST QAPG+DSEVILYPQAIFKDPFRRGNNILV+CD YTPAGEP+PTNKR+ AAKIF
Sbjct:   16 TEKIIAEYIWVGGSGIDIRSKARTLPGPVSDPAKLPKWNYDGSSTNQAPGKDSEVILYPQAIFKDPFRRGNNILVICDVYTPAGEPLPTNKRYNAAKIF 114          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA4_PEA (Glutamine synthetase root isozyme B OS=Pisum sativum GN=GS3B PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 1.738e-48
Identity = 87/99 (87.88%), Postives = 96/99 (96.97%), Query Frame = 3
Query:  144 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 440
            T+KIIAEYIW+GGSG+D+RSKARTLPGPVSDP+KLPKWNYDGSST QAPG+DSEVILYPQAIFKDPFRRGNNILV+CD YTPAGEP+PTNKR+ AAKIF
Sbjct:   16 TEKIIAEYIWVGGSGIDIRSKARTLPGPVSDPAKLPKWNYDGSSTDQAPGKDSEVILYPQAIFKDPFRRGNNILVICDVYTPAGEPLPTNKRYNAAKIF 114          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLN12_ORYSJ (Glutamine synthetase cytosolic isozyme 1-2 OS=Oryza sativa subsp. japonica GN=GLN1-2 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.471e-47
Identity = 85/99 (85.86%), Postives = 95/99 (95.96%), Query Frame = 3
Query:  144 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 440
            +DKIIAEYIW+GGSG+D+RSKART+ GP++D S+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRG+NILVMCD YTP GEPIPTNKRH+AAKIF
Sbjct:   16 SDKIIAEYIWVGGSGIDLRSKARTVKGPITDVSQLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGDNILVMCDCYTPQGEPIPTNKRHSAAKIF 114          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA5_MAIZE (Glutamine synthetase root isozyme 5 OS=Zea mays GN=GS1-5 PE=2 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 4.280e-47
Identity = 83/99 (83.84%), Postives = 94/99 (94.95%), Query Frame = 3
Query:  144 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 440
            TDKIIAEYIW+GGSG+D+RSKART+ GP++DPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR+GNNILVMCD YTP GEPIP+NKR+ AA +F
Sbjct:   16 TDKIIAEYIWVGGSGIDLRSKARTVKGPITDPSQLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRKGNNILVMCDCYTPQGEPIPSNKRYKAATVF 114          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA3_HORVU (Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 5.590e-47
Identity = 87/98 (88.78%), Postives = 91/98 (92.86%), Query Frame = 3
Query:  144 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 437
            T+KIIAEYIWIGGSGMD+RSKAR LPGPV+ PSKLPKWNYDGSSTGQAPGEDSEVILYPQAI KDPFR GNNILVMCD YTP GEPIPTNKR+ AAKI
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARHLPGPVTHPSKLPKWNYDGSSTGQAPGEDSEVILYPQAILKDPFREGNNILVMCDCYTPRGEPIPTNKRYNAAKI 113          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLN15_ARATH (Glutamine synthetase cytosolic isozyme 1-5 OS=Arabidopsis thaliana GN=GLN1-5 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 7.301e-47
Identity = 86/99 (86.87%), Postives = 92/99 (92.93%), Query Frame = 3
Query:  144 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 440
            T KIIAEYIWIGGSGMD+RSKARTLPGPVS+P+KLPKWNYDGSST QA G+DSEVILYPQAIFKDPFR+GNNILVMCDAY PAG+PIPTN RH A KIF
Sbjct:   16 TKKIIAEYIWIGGSGMDIRSKARTLPGPVSNPTKLPKWNYDGSSTDQAAGDDSEVILYPQAIFKDPFRKGNNILVMCDAYRPAGDPIPTNNRHKAVKIF 114          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA1_MAIZE (Glutamine synthetase root isozyme 1 OS=Zea mays GN=GLN6 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.245e-46
Identity = 82/99 (82.83%), Postives = 95/99 (95.96%), Query Frame = 3
Query:  144 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 440
            TD+IIAEYIWIGG+G+D+RSKART+ GP++DP +LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR+GN+ILVMCD YTP GEPIPTNKR++AAK+F
Sbjct:   16 TDRIIAEYIWIGGTGIDLRSKARTVKGPITDPIQLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRKGNHILVMCDCYTPQGEPIPTNKRYSAAKVF 114          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA2_HORVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 1.627e-46
Identity = 84/99 (84.85%), Postives = 92/99 (92.93%), Query Frame = 3
Query:  144 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 440
            TDKIIAEYIW+GGSG+D+RSK+RT+  PV DPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNNILV+CD YTP GEPIPTNKRH AA+IF
Sbjct:   78 TDKIIAEYIWVGGSGIDLRSKSRTISKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPQGEPIPTNKRHMAAQIF 176          
The following BLAST results are available for this feature:
BLAST of FC930772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
GLNA3_LUPAN1.019e-4887.88Glutamine synthetase nodule isozyme (Fragment) OS=... [more]
GLNA2_PHAVU1.019e-4887.88Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE... [more]
GLNA3_PEA1.331e-4887.88Glutamine synthetase root isozyme A OS=Pisum sativ... [more]
GLNA4_PEA1.738e-4887.88Glutamine synthetase root isozyme B OS=Pisum sativ... [more]
GLN12_ORYSJ1.471e-4785.86Glutamine synthetase cytosolic isozyme 1-2 OS=Oryz... [more]
GLNA5_MAIZE4.280e-4783.84Glutamine synthetase root isozyme 5 OS=Zea mays GN... [more]
GLNA3_HORVU5.590e-4788.78Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1[more]
GLN15_ARATH7.301e-4786.87Glutamine synthetase cytosolic isozyme 1-5 OS=Arab... [more]
GLNA1_MAIZE1.245e-4682.83Glutamine synthetase root isozyme 1 OS=Zea mays GN... [more]
GLNA2_HORVU1.627e-4684.85Glutamine synthetase leaf isozyme, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC34108H05EF PostHarvP1 Citrus clementina cDNA clone C34108H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930772 ID=FC930772; Name=FC930772; organism=Citrus clementina; type=EST; length=441bp
GGTTCACGTCTCTGTGTAGCACATTAACATCCCTTCAATCACAGCAATCT
CATTACCAGTTTCTTTGTTGTGTTAAGAGACTAAAGAGTCTTCGAAACAT
GTCTCTGCTCTCAGATCTCCTTAACCTTAACCTCTCAGAATCCACTGACA
AGATCATCGCTGAGTACATATGGATCGGTGGATCTGGCATGGACATGAGG
AGCAAAGCAAGGACTCTTCCCGGTCCCGTTAGTGATCCTTCCAAGCTGCC
TAAGTGGAATTATGATGGTTCCAGCACAGGCCAAGCACCTGGAGAAGATA
GTGAAGTGATCCTCTATCCTCAAGCTATTTTCAAGGATCCATTCAGGAGA
GGCAACAATATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGAGAACC
AATTCCAACAAACAAAAGACATGCAGCTGCCAAGATTTTCA
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