FC930772

Overview
NameFC930772
Unique NameFC930772
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length441
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13662 contig Ccv1_Contig13662:36..476. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA2_ARATH (Glutamine synthetase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLN2 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.597e-44
Identity = 81/99 (81.82%), Postives = 92/99 (92.93%), Query Frame = 3
Query:  144 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 440
            +D+IIAEYIWIGGSG+D+RSK+RT+  PV DPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIF+DPFR GNNILV+CD +TPAGEPIPTNKR  AA+IF
Sbjct:   74 SDRIIAEYIWIGGSGIDLRSKSRTIEKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFRDPFRGGNNILVICDTWTPAGEPIPTNKRAKAAEIF 172          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLN13_ORYSJ (Glutamine synthetase cytosolic isozyme 1-3 OS=Oryza sativa subsp. japonica GN=GLN1-3 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 5.785e-44
Identity = 79/99 (79.80%), Postives = 90/99 (90.91%), Query Frame = 3
Query:  144 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 440
            TDK+IAEYIW+GG+GMD+RSKARTL GPV DPSKLPKWN+DGSSTGQA G+DSEVIL+PQAIF+DPFR+G NILVMCD Y P GEPIPTN R+ AA+IF
Sbjct:   18 TDKVIAEYIWVGGTGMDVRSKARTLSGPVDDPSKLPKWNFDGSSTGQATGDDSEVILHPQAIFRDPFRKGKNILVMCDCYAPNGEPIPTNNRYNAARIF 116          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA1_DAUCA (Glutamine synthetase cytosolic isozyme OS=Daucus carota GN=GLN1 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 4.146e-42
Identity = 81/99 (81.82%), Postives = 87/99 (87.88%), Query Frame = 3
Query:  144 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 440
            TDK IAEYIWI   G  +RSKARTL GPV DP+KLPKWN+DGSSTGQ PG+DSEVI+YPQAIFKDPFRRGN+ILVMCD YTPAGEPIPTNKR  AAKIF
Sbjct:   16 TDKFIAEYIWIDAVG-GLRSKARTLSGPVDDPTKLPKWNFDGSSTGQGPGDDSEVIIYPQAIFKDPFRRGNHILVMCDTYTPAGEPIPTNKRCNAAKIF 113          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA_PINSY (Glutamine synthetase cytosolic isozyme OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.575e-41
Identity = 79/99 (79.80%), Postives = 88/99 (88.89%), Query Frame = 3
Query:  144 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 440
            T+K+IAEYIWIGGSGMDMRSKAR+L GPVS   +LPKWNYDGSSTGQA G DSEVILYPQAIF+DPFRRG +ILV+CDAY+P G  IP+NKR AAAKIF
Sbjct:   17 TEKVIAEYIWIGGSGMDMRSKARSLSGPVSSVKELPKWNYDGSSTGQAQGHDSEVILYPQAIFRDPFRRGKHILVICDAYSPNGTAIPSNKRAAAAKIF 115          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA1_CHLRE (Glutamine synthetase cytosolic isozyme OS=Chlamydomonas reinhardtii GN=GLN1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.755e-30
Identity = 65/106 (61.32%), Postives = 75/106 (70.75%), Query Frame = 3
Query:  150 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTP----------AGEPIPTNKRHAAAKI 437
            KI AEY+WIGGS  D+RSK+RTL    + P  LP WNYDGSSTGQAPG DSEV L P++IFKDPFR G+NILVMCD Y P          A +PIPTN R A A++
Sbjct:   37 KICAEYVWIGGSMHDVRSKSRTLSTIPTKPEDLPHWNYDGSSTGQAPGHDSEVYLIPRSIFKDPFRGGDNILVMCDCYEPPKVNPDGTLAAPKPIPTNTRFACAEV 142          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA2_DROME (Glutamine synthetase 2 cytoplasmic OS=Drosophila melanogaster GN=Gs2 PE=2 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 1.026e-24
Identity = 53/93 (56.99%), Postives = 62/93 (66.67%), Query Frame = 3
Query:  159 AEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 437
            A Y+WI G+G D+R K RTL      P +LP WNYDGSS  QA G +S+  LYP AI+KDPFRRGNNILVMCD Y   G P  TNKR    ++
Sbjct:   34 ATYVWIDGTGEDLRCKDRTLDFIPQSPKELPVWNYDGSSCYQAEGSNSDTYLYPVAIYKDPFRRGNNILVMCDTYKFDGTPTDTNKRKTCLEV 126          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA_YEAST (Glutamine synthetase OS=Saccharomyces cerevisiae GN=GLN1 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.985e-24
Identity = 52/97 (53.61%), Postives = 69/97 (71.13%), Query Frame = 3
Query:  150 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 440
            +IIAEY+WI G+G ++RSK RTL   ++   +LP+WN+DGSST QAPG DS++ L P A + DPFRRG+NI+V+   Y   G P   N RH AAK+F
Sbjct:   23 RIIAEYVWIDGTG-NLRSKGRTLKKRITSIDQLPEWNFDGSSTNQAPGHDSDIYLKPVAYYPDPFRRGDNIVVLAACYNNDGTPNKFNHRHEAAKLF 118          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA_ASHGO (Glutamine synthetase OS=Ashbya gossypii GN=GLN1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 5.092e-24
Identity = 52/96 (54.17%), Postives = 67/96 (69.79%), Query Frame = 3
Query:  153 IIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 440
            +IAEYIW+  +G  +RSK RTL   V    +LP+WN+DGSSTGQAPG DS+V L P A + DPFRRG+NI+V+ + +   G P   N RH AAK+F
Sbjct:   23 VIAEYIWVDSAG-HLRSKGRTLQRRVESVDELPEWNFDGSSTGQAPGHDSDVYLKPVAFYPDPFRRGDNIIVLAECWNNDGTPNKYNHRHEAAKLF 117          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA_KLULA (Glutamine synthetase OS=Kluyveromyces lactis GN=GLN1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 8.685e-24
Identity = 52/96 (54.17%), Postives = 66/96 (68.75%), Query Frame = 3
Query:  153 IIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 440
            IIAEY+WI   G  +RSK RTL   V+    LP+WN+DGSSTGQAPG DS++ L P A + DPFRRG+NI+V+ + +   G P   N RH AAK+F
Sbjct:   26 IIAEYVWIDSEG-GLRSKGRTLNKKVTSVDSLPEWNFDGSSTGQAPGHDSDIYLKPVAFYPDPFRRGDNIVVLAECWNNDGTPNKFNHRHEAAKLF 120          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA_CANGA (Glutamine synthetase OS=Candida glabrata GN=GLN1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 8.685e-24
Identity = 50/97 (51.55%), Postives = 69/97 (71.13%), Query Frame = 3
Query:  150 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 440
            K+IAEY+W+ G+G ++RSKARTL   ++   +LP+WN+DGSST QAPG DS++ L P A + DPFRRG+NI V+ + +   G P   N RH A K+F
Sbjct:   23 KVIAEYVWVDGTG-NLRSKARTLNKVITSIEQLPEWNFDGSSTNQAPGYDSDIYLKPVAFYPDPFRRGDNITVLAECFNSDGTPNKFNHRHEANKLF 118          
The following BLAST results are available for this feature:
BLAST of FC930772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
GLNA2_ARATH2.597e-4481.82Glutamine synthetase, chloroplastic/mitochondrial ... [more]
GLN13_ORYSJ5.785e-4479.80Glutamine synthetase cytosolic isozyme 1-3 OS=Oryz... [more]
GLNA1_DAUCA4.146e-4281.82Glutamine synthetase cytosolic isozyme OS=Daucus c... [more]
GLNA_PINSY1.575e-4179.80Glutamine synthetase cytosolic isozyme OS=Pinus sy... [more]
GLNA1_CHLRE4.755e-3061.32Glutamine synthetase cytosolic isozyme OS=Chlamydo... [more]
GLNA2_DROME1.026e-2456.99Glutamine synthetase 2 cytoplasmic OS=Drosophila m... [more]
GLNA_YEAST2.985e-2453.61Glutamine synthetase OS=Saccharomyces cerevisiae G... [more]
GLNA_ASHGO5.092e-2454.17Glutamine synthetase OS=Ashbya gossypii GN=GLN1 PE... [more]
GLNA_KLULA8.685e-2454.17Glutamine synthetase OS=Kluyveromyces lactis GN=GL... [more]
GLNA_CANGA8.685e-2451.55Glutamine synthetase OS=Candida glabrata GN=GLN1 P... [more]

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Properties
Property NameValue
Genbank descriptionC34108H05EF PostHarvP1 Citrus clementina cDNA clone C34108H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930772 ID=FC930772; Name=FC930772; organism=Citrus clementina; type=EST; length=441bp
GGTTCACGTCTCTGTGTAGCACATTAACATCCCTTCAATCACAGCAATCT
CATTACCAGTTTCTTTGTTGTGTTAAGAGACTAAAGAGTCTTCGAAACAT
GTCTCTGCTCTCAGATCTCCTTAACCTTAACCTCTCAGAATCCACTGACA
AGATCATCGCTGAGTACATATGGATCGGTGGATCTGGCATGGACATGAGG
AGCAAAGCAAGGACTCTTCCCGGTCCCGTTAGTGATCCTTCCAAGCTGCC
TAAGTGGAATTATGATGGTTCCAGCACAGGCCAAGCACCTGGAGAAGATA
GTGAAGTGATCCTCTATCCTCAAGCTATTTTCAAGGATCCATTCAGGAGA
GGCAACAATATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGAGAACC
AATTCCAACAAACAAAAGACATGCAGCTGCCAAGATTTTCA
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