FC930775

Overview
NameFC930775
Unique NameFC930775
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length151
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15273 contig Ccv1_Contig15273:29..179. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.272e-12
Identity = 33/38 (86.84%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            V+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEV
Sbjct:    6 VQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.272e-12
Identity = 33/38 (86.84%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            V+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEV
Sbjct:    6 VQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.272e-12
Identity = 33/38 (86.84%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            V+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEV
Sbjct:    6 VQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.272e-12
Identity = 33/38 (86.84%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            V+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEV
Sbjct:    6 VQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.272e-12
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            +E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEV
Sbjct:   21 IEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV 58          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.272e-12
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            +E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEV
Sbjct:   21 IEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV 58          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.885e-12
Identity = 32/38 (84.21%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            V+L+RIENKINRQVTF+KRRNGLLKKA+E+SVLCDA+V
Sbjct:    6 VQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.885e-12
Identity = 32/38 (84.21%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            V+L+RIENKINRQVTF+KRRNGLLKKA+E+SVLCDA+V
Sbjct:    6 VQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 6.885e-12
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            VELKRIENKINRQVTF+KRR GLLKKA E+SVLCDAEV
Sbjct:    6 VELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.992e-12
Identity = 35/38 (92.11%), Postives = 35/38 (92.11%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            VELK IENKINRQVTFAKRR  LLKKAYELSVLCDAEV
Sbjct:    6 VELKMIENKINRQVTFAKRRKRLLKKAYELSVLCDAEV 43          
The following BLAST results are available for this feature:
BLAST of FC930775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
AGL8_SOLLC5.272e-1286.84Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_SOLCO5.272e-1286.84Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_SINAL5.272e-1286.84Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
AGL8_ARATH5.272e-1286.84Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
AGL5_ARATH5.272e-1286.84Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
AGL1_ARATH5.272e-1286.84Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
MAD18_ORYSJ6.885e-1284.21MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD18_ORYSI6.885e-1284.21MADS-box transcription factor 18 OS=Oryza sativa s... [more]
CAL_ARATH6.885e-1289.47Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]
AGL9_ARADE8.992e-1292.11Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]

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Properties
Property NameValue
Genbank descriptionC34108H08EF PostHarvP1 Citrus clementina cDNA clone C34108H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930775 ID=FC930775; Name=FC930775; organism=Citrus clementina; type=EST; length=151bp
GGAAGAAGAAAGGAGAAGAAAATGGGAAGGGGTAGGGTTGAGTTGAAGAG
GATAGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAATG
GCCTATTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTT
G
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