FC930775

Overview
NameFC930775
Unique NameFC930775
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length151
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: AGL13_ARATH (Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.992e-12
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            VE+KRIENKI RQVTF+KR++GLLKKAYELSVLCDAEV
Sbjct:    6 VEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.174e-11
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            V+LKRIENKINRQVTF+KRR GLLKKA+E+SVLCDAEV
Sbjct:    6 VQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.174e-11
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            V+LKRIENKINRQVTF+KRR GLLKKA+E+SVLCDAEV
Sbjct:    6 VQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.534e-11
Identity = 30/38 (78.95%), Postives = 36/38 (94.74%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            +E+KRIENK +RQVTF KRRNGLLKKAYEL++LCDAE+
Sbjct:    6 IEIKRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEI 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.534e-11
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            V+LKRIENKINRQVTF+KRR+GLLKKA E+SVLCDAEV
Sbjct:    6 VQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.003e-11
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            +E+KRIEN  NRQVTF KRR+GLLKKAYELSVLCDAEV
Sbjct:   48 IEIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEV 85          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.003e-11
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            +E+KRIEN  +RQVTF KRRNGLLKKAYELSVLCDAEV
Sbjct:    6 IEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.829e-11
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 1
Query:   40 ELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            ELKRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEV
Sbjct:    7 ELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.829e-11
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 1
Query:   40 ELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            ELKRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEV
Sbjct:    7 ELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.612e-11
Identity = 32/38 (84.21%), Postives = 36/38 (94.74%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            V+LKRIEN INRQVTF+KRR+GLLKKA E+SVLCDAEV
Sbjct:    6 VQLKRIENTINRQVTFSKRRSGLLKKANEISVLCDAEV 43          
The following BLAST results are available for this feature:
BLAST of FC930775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
AGL13_ARATH8.992e-1286.84Agamous-like MADS-box protein AGL13 OS=Arabidopsis... [more]
AP1_SINAL1.174e-1186.84Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]
AP1_ARATH1.174e-1186.84Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]
MAD21_ORYSJ1.534e-1178.95MADS-box transcription factor 21 OS=Oryza sativa s... [more]
MAD14_ORYSJ1.534e-1186.84MADS-box transcription factor 14 OS=Oryza sativa s... [more]
MAD58_ORYSJ2.003e-1184.21MADS-box transcription factor 58 OS=Oryza sativa s... [more]
MAD13_ORYSJ2.003e-1184.21MADS-box transcription factor 13 OS=Oryza sativa s... [more]
MAD56_ORYSJ5.829e-1186.49MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MAD56_ORYSI5.829e-1186.49MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MAD14_ORYSI7.612e-1184.21MADS-box transcription factor 14 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC34108H08EF PostHarvP1 Citrus clementina cDNA clone C34108H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930775 ID=FC930775; Name=FC930775; organism=Citrus clementina; type=EST; length=151bp
GGAAGAAGAAAGGAGAAGAAAATGGGAAGGGGTAGGGTTGAGTTGAAGAG
GATAGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAATG
GCCTATTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTT
G
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