FC930781
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PP221_ARATH (Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1) HSP 1 Score: 50.8322 bits (120), Expect = 8.546e-13 Identity = 27/99 (27.27%), Postives = 47/99 (47.47%), Query Frame = 2 Query: 101 DLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEML 397 D+ Y +I C+ ++ EM + ++ N+ AL+ G ++ + + + L+ M + G + V YN+ I LCK K EA A + EML Sbjct: 428 DVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEML 526 HSP 2 Score: 42.743 bits (99), Expect = 8.546e-13 Identity = 23/99 (23.23%), Postives = 42/99 (42.42%), Query Frame = 1 Query: 403 GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGVSKSVKQRAYW 699 G KP+ TYS + G C+D + A + + SGL + ++ +++ +C G + A+ + N T +L+ G V S + W Sbjct: 529 GWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIW 627
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PP129_ARATH (Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2) HSP 1 Score: 56.9954 bits (136), Expect = 1.118e-12 Identity = 44/167 (26.35%), Postives = 66/167 (39.52%), Query Frame = 2 Query: 2 AFNALLLALTIAKDYKEVKRVFIEF-------PKTY--------------------------GIKPDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK 403 AFN LL AL +K+ ++ + VF KTY G PD+ TY+ ++ C+ I+ MD KP + LV + E + E+ MER GMK+ V+++N I + CK + +L EM SK Sbjct: 205 AFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSK 371 HSP 2 Score: 36.1946 bits (82), Expect = 1.118e-12 Identity = 20/80 (25.00%), Postives = 37/80 (46.25%), Query Frame = 1 Query: 409 KPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSL 648 +P++ TY+ I FC+ E A K ++ M G+ P+ + ++ +C+ + A +E I G P+ T L Sbjct: 408 EPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRL 487
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PP160_ARATH (Pentatricopeptide repeat-containing protein At2g17525, mitochondrial OS=Arabidopsis thaliana GN=At2g17525 PE=2 SV=2) HSP 1 Score: 56.6102 bits (135), Expect = 1.444e-12 Identity = 31/116 (26.72%), Postives = 55/116 (47.41%), Query Frame = 2 Query: 53 VKRVF--IEFPKTYGIKPDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEM 394 +KRV ++ +GIKP L +N ++ + +M I + ++G L+ G + D K+LQ+M+ G+ +YN +H+LCK K A++L+ EM Sbjct: 128 IKRVISVVDLVSKFGIKPSLKVFNSILDVLVKEDIDIAREFFTRKMMASGIHGDVYTYGILMKGLSLTNRIGDGFKLLQIMKTSGVAPNAVVYNTLLHALCKNGKVGRARSLMSEM 243 HSP 2 Score: 36.1946 bits (82), Expect = 1.444e-12 Identity = 24/89 (26.97%), Postives = 36/89 (40.45%), Query Frame = 1 Query: 403 GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGV 669 G P+ VT + + C +G EA + + + G + T+V C G A F E KG++PN T L+ G V Sbjct: 278 GFVPDVVTVTKVMEVLCNEGRVSEALEVLERVESKGGKVDVVACNTLVKGYCALGKMRVAQRFFIEMERKGYLPNVETYNLLIAGYCDV 366
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PP158_ARATH (Pentatricopeptide repeat-containing protein At2g17140 OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1) HSP 1 Score: 49.2914 bits (116), Expect = 4.070e-12 Identity = 31/133 (23.31%), Postives = 60/133 (45.11%), Query Frame = 2 Query: 5 FNALLLALTIAKDYKEVKRVF--IEFPKTYGI-KPDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEM 394 FN+ + AL + R+F +E + G+ +P+ TYN ++K FC+ + + + S+ + G + K+ + VL+ M G+ + YN+ + LCKL ++AK ++ M Sbjct: 255 FNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLM 387 HSP 2 Score: 41.9726 bits (97), Expect = 4.070e-12 Identity = 23/88 (26.14%), Postives = 42/88 (47.73%), Query Frame = 1 Query: 403 GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAG 666 G+ P++VTY ++G+C G + AK + M + PN+ +++ + K G A ++ KG+ + T +V GL G Sbjct: 391 GVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCG 478 HSP 3 Score: 56.6102 bits (135), Expect = 1.948e-11 Identity = 29/102 (28.43%), Postives = 52/102 (50.98%), Query Frame = 2 Query: 89 GIKPDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEM 394 GI P T+N +I+A C+ + EM K KPN +FG LV G+ K + ++L ME +G+ +YN + S C+ + +++ ++++M Sbjct: 142 GIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKM 243 HSP 4 Score: 32.3426 bits (72), Expect = 1.948e-11 Identity = 22/64 (34.38%), Postives = 31/64 (48.44%), Query Frame = 1 Query: 403 GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNS---GL-SPNSSVYFTMVYFMCKGGDYETA 582 G+ P+ VT++ I CK+G +A + + M GL PNS Y M+ CK G E A Sbjct: 247 GLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDA 310
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PPR67_ARATH (Putative pentatricopeptide repeat-containing protein At1g31840 OS=Arabidopsis thaliana GN=At1g31840 PE=3 SV=1) HSP 1 Score: 53.1434 bits (126), Expect = 4.095e-12 Identity = 27/87 (31.03%), Postives = 43/87 (49.43%), Query Frame = 1 Query: 403 GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLA 663 G+ PN VTY+ I G C+DG EA Y + G+ P+ Y +++ CK G+ + ++ I G+ P+ LV GL+ Sbjct: 386 GISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLS 472 HSP 2 Score: 38.1206 bits (87), Expect = 4.095e-12 Identity = 28/130 (21.54%), Postives = 55/130 (42.31%), Query Frame = 2 Query: 8 NALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEML 397 N +L L++ D EV + G P++ T+ +I FC+ + M+++ I+P+ ++ L+ G++K +K+ G+K V +++ I K A A + ML Sbjct: 256 NKVLKGLSV--DQIEVASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRML 383
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PPR78_ARATH (Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 4.126e-12 Identity = 37/122 (30.33%), Postives = 56/122 (45.90%), Query Frame = 2 Query: 38 KDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK 403 +D ++VF E + + DL YN ++ A C+ + EM +KP+A SF + + KVL M+RY + V +N I +LCK K +A LLDEM+ K Sbjct: 222 RDASGARKVFDEMLERNCVV-DLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQK 342 HSP 2 Score: 32.7278 bits (73), Expect = 4.126e-12 Identity = 23/86 (26.74%), Postives = 39/86 (45.35%), Query Frame = 1 Query: 412 PNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVY-FMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAG 666 P+ TY+ + + G F+ A + + MS P + Y M++ + K G E A + + I +G P TT++ L L G Sbjct: 381 PDRHTYNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIPPYSTTVEMLRNRLVG 466
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PP187_ARATH (Pentatricopeptide repeat-containing protein At2g36240 OS=Arabidopsis thaliana GN=At2g36240 PE=2 SV=1) HSP 1 Score: 52.7582 bits (125), Expect = 5.365e-12 Identity = 28/103 (27.18%), Postives = 48/103 (46.60%), Query Frame = 2 Query: 95 KPDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK 403 KPD+ T+N +I +C + EM K +PN SF L+ GF K E+ K+ M G + + + + LC+ + +A L+ ++L+K Sbjct: 225 KPDVCTFNILINGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRGFLSSGKIEEGVKMAYEMIELGCRFSEATCEILVDGLCREGRVDDACGLVLDLLNK 327 HSP 2 Score: 38.1206 bits (87), Expect = 5.365e-12 Identity = 23/85 (27.06%), Postives = 39/85 (45.88%), Query Frame = 1 Query: 403 GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTG 657 G P + + + G K G E+A F M N+G+ P+S + ++ +C A + +KG+ P+ TT LV+G Sbjct: 363 GQTPCFIACTTLVEGLRKSGRTEKASGFMEKMMNAGILPDSVTFNLLLRDLCSSDHSTDANRLRLLASSKGYEPDETTYHVLVSG 447
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PP180_ARATH (Pentatricopeptide repeat-containing protein At2g32630 OS=Arabidopsis thaliana GN=At2g32630 PE=2 SV=1) HSP 1 Score: 50.447 bits (119), Expect = 6.922e-12 Identity = 30/88 (34.09%), Postives = 41/88 (46.59%), Query Frame = 1 Query: 403 GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAG 666 GM P+S TY+ I+G C N +EA + + M GL NS Y M+ + K G + A G E KG +T + T L G Sbjct: 534 GMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEMKRKG----YTIDNKVYTALIG 617 HSP 2 Score: 40.0466 bits (92), Expect = 6.922e-12 Identity = 26/102 (25.49%), Postives = 42/102 (41.18%), Query Frame = 2 Query: 89 GIKPDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEM 394 G + D+ T N + F L M +K + S+ L+ + KE E+ ++ M G++ YNV I++ CK K EA+ L M Sbjct: 429 GFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANM 530
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PP375_ARATH (Pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Arabidopsis thaliana GN=At5g11310 PE=2 SV=1) HSP 1 Score: 45.8246 bits (107), Expect = 6.928e-12 Identity = 24/83 (28.92%), Postives = 38/83 (45.78%), Query Frame = 1 Query: 403 GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLV 651 G+ P + TY+HF F K EE Y + +G SP+ Y ++ +C+ G A+ KE +G P+ T L+ Sbjct: 385 GVDPTTTTYNHFFKYFSKHNKTEEGMNLYFKLIEAGHSPDRLTYHLILKMLCEDGKLSLAMQVNKEMKNRGIDPDLLTTTMLI 467 HSP 2 Score: 44.669 bits (104), Expect = 6.928e-12 Identity = 33/136 (24.26%), Postives = 65/136 (47.79%), Query Frame = 2 Query: 5 FNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGM-KSG--VSMYNVRIHSLCKLRKCAEAKALLDEMLSK 403 FN LL ++ K+ ++++ E K +KP + TY +I+ +C +L EM ++ N F ++ G + + +++ L MMER+ + +SG + YN + + CK A +L M+++ Sbjct: 253 FNILLNGWFRSRKLKQAEKLWEEM-KAMNVKPTVVTYGTLIEGYCRMRRVQIAMEVLEEMKMAEMEINFMVFNPIIDGLGEAGR---LSEALGMMERFFVCESGPTIVTYNSLVKNFCKAGDLPGASKILKMMMTR 384
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PP368_ARATH (Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Arabidopsis thaliana GN=At5g08310 PE=3 SV=1) HSP 1 Score: 45.0542 bits (105), Expect = 8.917e-12 Identity = 27/103 (26.21%), Postives = 47/103 (45.63%), Query Frame = 2 Query: 98 PDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSKE 406 PD+ Y+ +IKA C+ + EM K +KP +++ +++ G+ KE + + + M V Y IH LC + +EA +EM K+ Sbjct: 612 PDVIAYHVLIKALCKACRTMEADILFNEMVSKGLKPTVATYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLCASGRPSEAIFRWNEMKGKD 714 HSP 2 Score: 45.0542 bits (105), Expect = 8.917e-12 Identity = 22/71 (30.99%), Postives = 34/71 (47.89%), Query Frame = 1 Query: 412 PNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVP 624 PN +T+ I G CK G EA ++R M + P+S+VY ++V + G +E + KG P Sbjct: 717 PNRITFMALIQGLCKCGWSGEALVYFREMEEKEMEPDSAVYLSLVSSFLSSENINAGFGIFREMVHKGRFP 787 The following BLAST results are available for this feature:
BLAST of FC930781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 113
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930781 ID=FC930781; Name=FC930781; organism=Citrus clementina; type=EST; length=701bpback to top |