FC930782
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_PYRIL (30S ribosomal protein S3Ae OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.783e-12 Identity = 49/172 (28.49%), Postives = 85/172 (49.42%), Query Frame = 1 Query: 139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654 DP+A K W+ + APS +G + ++ + L R EVSL D+ + H K+R + V G +T F G+ T D +RSLVRK + + A V+VKT D + +R+ + T T ++Q +R++M +++ +A+ D + +F+ EV+ Sbjct: 20 DPWALKKWFSVYAPSY-----LGGVFLAEVPASE--PQKLLLRTLEVSLFDITKDLSHLPIKLRFQIHKVDGLKAITRFKGLELTRDYIRSLVRKGTSKVSAIVEVKTKDGWVMRIAVLAIT---------THRIGSAQKSAMRKRMFDVLTRKASEMD----IGQFLKEVL 171
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_PYRAB (30S ribosomal protein S3Ae OS=Pyrococcus abyssi GN=rps3Ae PE=3 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 1.783e-12 Identity = 53/166 (31.93%), Postives = 77/166 (46.39%), Query Frame = 1 Query: 133 AADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLV 630 A D + K WY I AP F VG T E + +RV EV+L D+ + + K+ + DV+G+N T F GM +RSLVR+ T I+ ++ T D + LR+ + R QTSQ R IR+ M+EI+ +A + K V Sbjct: 10 AKDKWKLKQWYVIYAPDFFGGVEVGLTPADDP-------EKVLNRVVEVTLKDITGDFLKGHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLVRRRTTRIDGIFNITTKDGYKLRVMAMVIAAR---------RIQTSQERAIRKIMQEIIYKKAEELNFKDFV 159
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_ENTBH (40S ribosomal protein S1 OS=Enterocytozoon bieneusi (strain H348) GN=RPS1 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.329e-12 Identity = 50/173 (28.90%), Postives = 89/173 (51.45%), Query Frame = 1 Query: 145 FAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEE----HAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRL-PNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAE 648 F+K +Y++ + F + N G T + + + + L R F V+ GDL + ++ R + + V G N + F GM + +K+ ++RKWHTLIEA + + T D T R+F TK+ P+ +K YA+ S+I+ IR+++ E + +++ LV+ E Sbjct: 28 FSKNKFYNLTS-RLFPITNHGTTSHPKMRSKQDLTPFLVGRTFSVNQGDLECADPMNAVNSPRYFKFKVNAVCGNNCNSVFNGMEVSREKITGMIRKWHTLIEANIPITTKDGSTWRVFVNAVTKKKNPDSLKH--YAKASEIKIIRKRIVETTLEHLDGIEVEKLVKVLSTE 197
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_DESK1 (30S ribosomal protein S3Ae OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.042e-12 Identity = 49/169 (28.99%), Postives = 77/169 (45.56%), Query Frame = 1 Query: 139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIA 645 D + K WY++ AP+ F +G T E L RV E +L D+ + + K+ + + G LT F G D +RSLVR+ + I+ D+ T D + LR+ + T N TSQ + IRR MRE + +A+ L LV++ ++ Sbjct: 11 DKWKMKKWYEVVAPTSFGGITLGSTPADDP-------EKLIGRVIETTLYDITGDITQVHVKLYFQIISIDGNKALTRFKGHELARDYMRSLVRRKSSKIQGIFDINTKDGYVLRVTIVALTSYRCN---------TSQKKAIRRVMREYIFKKASELTLDELVQEIMS 163
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_PYRAR (30S ribosomal protein S3Ae OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 7.492e-11 Identity = 48/172 (27.91%), Postives = 82/172 (47.67%), Query Frame = 1 Query: 139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654 DP+A K W+ + AP +G + T+ +E L R EVSL D+ + H K++ + V+G LT F G+ + D ++SLVRK + + A +VKT D +R+ + T T+Q +R+K+ E ++ +A+ D +F+ EV+ Sbjct: 20 DPWALKKWFAVHAPPY-----LGGVFLAEVPATE--AEKLLMRTLEVSLYDITKDISHLPVKLKFQIHRVEGLRALTRFKGLELSRDYVKSLVRKGTSKVVAITEVKTKDGMDMRVSVMVITAH---------RLGTAQKSAVRKKITETLLKKASEMD----TSQFLKEVL 171 The following BLAST results are available for this feature:
BLAST of FC930782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 175
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930782 ID=FC930782; Name=FC930782; organism=Citrus clementina; type=EST; length=656bpback to top |