FC930782

Overview
NameFC930782
Unique NameFC930782
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length656
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_EIMTE (40S ribosomal protein S3a OS=Eimeria tenella PE=2 SV=3)

HSP 1 Score: 229.565 bits (584), Expect = 1.140e-59
Identity = 111/172 (64.53%), Postives = 138/172 (80.23%), Query Frame = 1 
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF+KKDWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + I
Sbjct:   23 DPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMFSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTGEFQTNDLKEVVNKLIPDSI 193
[Close]
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_ASPTN (40S ribosomal protein S1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rps1 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.140e-59
Identity = 111/172 (64.53%), Postives = 139/172 (80.81%), Query Frame = 1 
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF++KD Y +KAPS F++R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR +++QGKN LTNF G++FTTDKLRSLVRKW +LIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I EVI
Sbjct:   22 DPFSRKDEYSVKAPSTFQIRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREAASCSLAQLTTKLIPEVI 193
[Close]
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_ASPOR (40S ribosomal protein S1 OS=Aspergillus oryzae GN=rps1 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.140e-59
Identity = 111/172 (64.53%), Postives = 139/172 (80.81%), Query Frame = 1 
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF++KD Y +KAPS F++R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR +++QGKN LTNF G++FTTDKLRSLVRKW +LIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I EVI
Sbjct:   22 DPFSRKDEYSVKAPSTFQIRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREAASCTLSQLTTKLIPEVI 193
[Close]
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_ASPFU (40S ribosomal protein S1 OS=Aspergillus fumigatus GN=rps1 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.140e-59
Identity = 112/172 (65.12%), Postives = 139/172 (80.81%), Query Frame = 1 
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF++KD Y +KAPS F++R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G++FTTDKLRSLVRKW +LIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I EVI
Sbjct:   22 DPFSRKDEYSVKAPSTFQIRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMIEIMQREAASCSLAQLTHKLIPEVI 193
[Close]
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_ASPFN (40S ribosomal protein S1 OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=rps1 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.140e-59
Identity = 111/172 (64.53%), Postives = 139/172 (80.81%), Query Frame = 1 
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF++KD Y +KAPS F++R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR +++QGKN LTNF G++FTTDKLRSLVRKW +LIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I EVI
Sbjct:   22 DPFSRKDEYSVKAPSTFQIRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREAASCTLSQLTTKLIPEVI 193
[Close]
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_ASPFC (40S ribosomal protein S1 OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=rps1 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.140e-59
Identity = 112/172 (65.12%), Postives = 139/172 (80.81%), Query Frame = 1 
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF++KD Y +KAPS F++R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G++FTTDKLRSLVRKW +LIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I EVI
Sbjct:   22 DPFSRKDEYSVKAPSTFQIRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMIEIMQREAASCSLAQLTHKLIPEVI 193
[Close]
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_ASPCL (40S ribosomal protein S1 OS=Aspergillus clavatus GN=rps1 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.140e-59
Identity = 111/172 (64.53%), Postives = 138/172 (80.23%), Query Frame = 1 
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF +KD Y +KAPS F++R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR +++QGKN LTNF G++FTTDKLRSLVRKW +LIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I EVI
Sbjct:   22 DPFTRKDEYSVKAPSTFQIRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREAASCSLAQLTHKLIPEVI 193
[Close]
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_XENTR (40S ribosomal protein S3a OS=Xenopus tropicalis GN=rps3a PE=2 SV=3)

HSP 1 Score: 229.18 bits (583), Expect = 1.489e-59
Identity = 111/172 (64.53%), Postives = 138/172 (80.23%), Query Frame = 1 
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF+KKDWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + I
Sbjct:   23 DPFSKKDWYDVKAPAMFNIRNLGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSI 193
[Close]
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_ORYLA (40S ribosomal protein S3a OS=Oryzias latipes GN=rps3a PE=2 SV=3)

HSP 1 Score: 229.18 bits (583), Expect = 1.489e-59
Identity = 111/172 (64.53%), Postives = 138/172 (80.23%), Query Frame = 1 
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF+KKDWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQV++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + +
Sbjct:   23 DPFSKKDWYDVKAPAMFNIRNLGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQVRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSV 193
[Close]
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3AB_XENLA (40S ribosomal protein S3a-B OS=Xenopus laevis GN=rps3a-B PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.539e-59
Identity = 111/172 (64.53%), Postives = 138/172 (80.23%), Query Frame = 1 
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF+KKDWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + I
Sbjct:   23 DPFSKKDWYDVKAPAMFNIRNLGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMSREVQTNDLKEVVNKLIPDSI 193
The following BLAST results are available for this feature:
BLAST of FC930782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
RS3A_EIMTE1.140e-5964.5340S ribosomal protein S3a OS=Eimeria tenella PE=2 ... [more]
RS3A_ASPTN1.140e-5964.5340S ribosomal protein S1 OS=Aspergillus terreus (s... [more]
RS3A_ASPOR1.140e-5964.5340S ribosomal protein S1 OS=Aspergillus oryzae GN=... [more]
RS3A_ASPFU1.140e-5965.1240S ribosomal protein S1 OS=Aspergillus fumigatus ... [more]
RS3A_ASPFN1.140e-5964.5340S ribosomal protein S1 OS=Aspergillus flavus (st... [more]
RS3A_ASPFC1.140e-5965.1240S ribosomal protein S1 OS=Aspergillus fumigatus ... [more]
RS3A_ASPCL1.140e-5964.5340S ribosomal protein S1 OS=Aspergillus clavatus G... [more]
RS3A_XENTR1.489e-5964.5340S ribosomal protein S3a OS=Xenopus tropicalis GN... [more]
RS3A_ORYLA1.489e-5964.5340S ribosomal protein S3a OS=Oryzias latipes GN=rp... [more]
RS3AB_XENLA2.539e-5964.5340S ribosomal protein S3a-B OS=Xenopus laevis GN=r... [more]

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Properties
Property NameValue
Genbank descriptionC34109A03EF PostHarvP1 Citrus clementina cDNA clone C34109A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930782 ID=FC930782; Name=FC930782; organism=Citrus clementina; type=EST; length=656bp
GGGTCTCTTCGCTCAAACGAACGAGCTAGGACTAGGTAGCAGCGGAGCCG
TCTCTTGAGCAGCAGCTGCACAAACATGGCTGTCGGGAAGAACAAGAGGA
TTTCAAAGGGGAAGAAAGGAGGCAAGGAGAAGGCTGCTGATCCGTTTGCC
AAGAAGGACTGGTATGATATCAAGGCTCCATCTTGTTTCCGCGTCAGAAA
TGTTGGCAAGACTCTTGTTACCCGGACTCAGGGTACCAAGATTGCATCAG
AAGGTCTCAAGCACAGAGTGTTTGAGGTATCACTAGGTGATCTTCTCAAT
GAAGAAGAGCATGCTTACAGGAAGATCAGACTGAGAGCTGAAGATGTCCA
AGGGAAGAATGTTTTGACTAACTTCTGGGGCATGAATTTCACTACAGACA
AGCTGAGGTCTTTGGTTAGGAAGTGGCATACCTTGATTGAAGCTTACGTG
GATGTCAAGACCACTGATAACTTCACATTGAGGTTGTTCTGCATTGGATT
CACCAAGAGACTTCCAAACCAGGTTAAGAGGACTTGCTACGCACAGACCA
GCCAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGGTTGCTCAG
GCAGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAGT
GATTGG
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