FC930782

Overview
NameFC930782
Unique NameFC930782
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length656
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3AA_XENLA (40S ribosomal protein S3a-A OS=Xenopus laevis GN=rps3a-A PE=2 SV=3)

HSP 1 Score: 228.409 bits (581), Expect = 2.539e-59
Identity = 111/172 (64.53%), Postives = 138/172 (80.23%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF+KKDWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + I
Sbjct:   23 DPFSKKDWYDVKAPAMFNIRNLGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMFEIMTREVQTNDLKEVVNKLIPDSI 193          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_TETNG (40S ribosomal protein S3a OS=Tetraodon nigroviridis GN=rps3a PE=3 SV=3)

HSP 1 Score: 228.024 bits (580), Expect = 3.317e-59
Identity = 110/172 (63.95%), Postives = 138/172 (80.23%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF+KKDWYD+KAP+ F +RN+GKTLVTRTQGT+IAS+GLK RV+EVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTKR  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + I
Sbjct:   23 DPFSKKDWYDVKAPAMFNIRNLGKTLVTRTQGTRIASDGLKGRVYEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKRRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSI 193          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_SOLSE (40S ribosomal protein S3a OS=Solea senegalensis GN=rps3a PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.317e-59
Identity = 109/172 (63.37%), Postives = 138/172 (80.23%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF+KKDWYD+KAP+ F +RN+GKTLVTRTQGT+IAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + +
Sbjct:   23 DPFSKKDWYDVKAPAMFNIRNLGKTLVTRTQGTRIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSV 193          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_NEUCR (40S ribosomal protein S1 OS=Neurospora crassa GN=crp-8 PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.317e-59
Identity = 111/172 (64.53%), Postives = 137/172 (79.65%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPFA+KDWY IKAP+ F VR+VGKTLV RT G K A++ LK R+FEVSL DL  +E+H++RK++LR +++QGKN LTNF G++FT+DKLRSLVRKW TLIEA + VKTTD++ LRLF I FTKR PNQVK+T YA +SQIR IRRKM EI+  +A+SC L  L  K I EVI
Sbjct:   22 DPFARKDWYGIKAPAPFNVRDVGKTLVNRTTGLKNANDALKGRIFEVSLADLQKDEDHSFRKVKLRVDEIQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANITVKTTDDYLLRLFAIAFTKRRPNQVKKTTYAASSQIRAIRRKMTEIIQREASSCTLTQLTSKLIPEVI 193          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_MACFA (40S ribosomal protein S3a OS=Macaca fascicularis GN=RPS3A PE=2 SV=3)

HSP 1 Score: 228.024 bits (580), Expect = 3.317e-59
Identity = 110/172 (63.95%), Postives = 137/172 (79.65%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF+KKDWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK  VFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + I
Sbjct:   23 DPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGHVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSI 193          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_DANRE (40S ribosomal protein S3a OS=Danio rerio GN=rps3a PE=2 SV=3)

HSP 1 Score: 228.024 bits (580), Expect = 3.317e-59
Identity = 109/172 (63.37%), Postives = 138/172 (80.23%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF+KKDWYD+KAP+ F +RN+GKTLVTRTQGT+IAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + +
Sbjct:   23 DPFSKKDWYDVKAPAMFNIRNLGKTLVTRTQGTRIASDGLKGRVFEVSLADLQNDEV-AFRKFKLVTEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSV 193          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_CRYNE (40S ribosomal protein S1 OS=Cryptococcus neoformans GN=RPS1 PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.317e-59
Identity = 111/172 (64.53%), Postives = 138/172 (80.23%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF +K+WYDIKAPS F  RN GKTLV RTQG K A++ LK RV E+SL DL N++E ++RKI+LR EDV GK+ LT+F+GM+FTTDKLRS+VRKW +L+EA+VDVKTTD + LRLF IGFTKR  NQVK+T YAQ+SQ+++IR KM EIM  +A   DLK LV+KF+ E I
Sbjct:   22 DPFTRKEWYDIKAPSFFENRNAGKTLVNRTQGLKNANDSLKGRVLELSLADLNNDQEQSFRKIKLRVEDVAGKSCLTSFYGMDFTTDKLRSIVRKWQSLVEAHVDVKTTDGYVLRLFAIGFTKRQSNQVKKTTYAQSSQLKEIRAKMVEIMRREAEGSDLKELVQKFVPESI 193          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_ASPNC (40S ribosomal protein S1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rps1 PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.317e-59
Identity = 111/172 (64.53%), Postives = 137/172 (79.65%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF +KD Y +KAPS F+ R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR +++QGKN LTNF G++FTTDKLRSLVRKW +LIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I EVI
Sbjct:   22 DPFTRKDEYSVKAPSTFQTRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREAASCSLAQLTTKLIPEVI 193          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_SALSA (40S ribosomal protein S3a OS=Salmo salar GN=rps3a PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.332e-59
Identity = 108/172 (62.79%), Postives = 139/172 (80.81%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF+KKDWYD+KAP+ F +RN+GKTLV+RTQGT+IAS+GLK RVFEVSL DL N+E  A+RK +L +EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + +
Sbjct:   23 DPFSKKDWYDVKAPAMFNIRNIGKTLVSRTQGTRIASDGLKGRVFEVSLADLQNDEV-AFRKFKLISEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSV 193          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_OPHHA (40S ribosomal protein S3a OS=Ophiophagus hannah GN=RPS3A PE=2 SV=3)

HSP 1 Score: 226.868 bits (577), Expect = 7.389e-59
Identity = 109/172 (63.37%), Postives = 137/172 (79.65%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF+KKDWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN L NF GM+ T DK+ S+V+KW T+IEA++DVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + I
Sbjct:   23 DPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLINFHGMDLTRDKMCSMVKKWQTMIEAHIDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMVEIMTREVQTNDLKEVVNKLIPDSI 193          
The following BLAST results are available for this feature:
BLAST of FC930782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
RS3AA_XENLA2.539e-5964.5340S ribosomal protein S3a-A OS=Xenopus laevis GN=r... [more]
RS3A_TETNG3.317e-5963.9540S ribosomal protein S3a OS=Tetraodon nigroviridi... [more]
RS3A_SOLSE3.317e-5963.3740S ribosomal protein S3a OS=Solea senegalensis GN... [more]
RS3A_NEUCR3.317e-5964.5340S ribosomal protein S1 OS=Neurospora crassa GN=c... [more]
RS3A_MACFA3.317e-5963.9540S ribosomal protein S3a OS=Macaca fascicularis G... [more]
RS3A_DANRE3.317e-5963.3740S ribosomal protein S3a OS=Danio rerio GN=rps3a ... [more]
RS3A_CRYNE3.317e-5964.5340S ribosomal protein S1 OS=Cryptococcus neoforman... [more]
RS3A_ASPNC3.317e-5964.5340S ribosomal protein S1 OS=Aspergillus niger (str... [more]
RS3A_SALSA4.332e-5962.7940S ribosomal protein S3a OS=Salmo salar GN=rps3a ... [more]
RS3A_OPHHA7.389e-5963.3740S ribosomal protein S3a OS=Ophiophagus hannah GN... [more]

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Properties
Property NameValue
Genbank descriptionC34109A03EF PostHarvP1 Citrus clementina cDNA clone C34109A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930782 ID=FC930782; Name=FC930782; organism=Citrus clementina; type=EST; length=656bp
GGGTCTCTTCGCTCAAACGAACGAGCTAGGACTAGGTAGCAGCGGAGCCG
TCTCTTGAGCAGCAGCTGCACAAACATGGCTGTCGGGAAGAACAAGAGGA
TTTCAAAGGGGAAGAAAGGAGGCAAGGAGAAGGCTGCTGATCCGTTTGCC
AAGAAGGACTGGTATGATATCAAGGCTCCATCTTGTTTCCGCGTCAGAAA
TGTTGGCAAGACTCTTGTTACCCGGACTCAGGGTACCAAGATTGCATCAG
AAGGTCTCAAGCACAGAGTGTTTGAGGTATCACTAGGTGATCTTCTCAAT
GAAGAAGAGCATGCTTACAGGAAGATCAGACTGAGAGCTGAAGATGTCCA
AGGGAAGAATGTTTTGACTAACTTCTGGGGCATGAATTTCACTACAGACA
AGCTGAGGTCTTTGGTTAGGAAGTGGCATACCTTGATTGAAGCTTACGTG
GATGTCAAGACCACTGATAACTTCACATTGAGGTTGTTCTGCATTGGATT
CACCAAGAGACTTCCAAACCAGGTTAAGAGGACTTGCTACGCACAGACCA
GCCAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGGTTGCTCAG
GCAGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAGT
GATTGG
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