FC930782

Overview
NameFC930782
Unique NameFC930782
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length656
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_TALSN (40S ribosomal protein S1 OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) GN=rps1 PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 9.650e-59
Identity = 110/172 (63.95%), Postives = 139/172 (80.81%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF++KD Y +KAPS F++R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G++FT+DKLRSLVRKW +LIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR IR+KM EI+  +AASC L  L  K I EVI
Sbjct:   22 DPFSRKDEYSVKAPSTFQIRDVGKTLVNRTTGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIIQREAASCTLSQLTTKLIPEVI 193          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_NEMVE (40S ribosomal protein S3a OS=Nematostella vectensis GN=v1g242621 PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 9.650e-59
Identity = 111/172 (64.53%), Postives = 137/172 (79.65%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF KKDWYD+KAPS F +R +GKT+VTRT GTKIAS+GLK RVFEVSL DL N+E  A+RK +L  E+VQG+N LTNF GMN TTDKLRSLV+KW TLIEA VDVKTTD + LR+FCIGFTKR  NQ+K+T YA+ +QI+ IR+KM +I+  + ++ DLK +V K I + I
Sbjct:   22 DPFTKKDWYDVKAPSMFNIRQIGKTVVTRTAGTKIASDGLKGRVFEVSLADLQNDEI-AFRKFKLMCEEVQGRNCLTNFHGMNMTTDKLRSLVKKWQTLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVSTNDLKEVVNKLIPDSI 192          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_MAGGR (40S ribosomal protein S1 OS=Magnaporthe grisea GN=RPS1 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 9.650e-59
Identity = 110/172 (63.95%), Postives = 138/172 (80.23%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPFA+KDWY IKAP+ F +R+VGKTLV R+ G K A++ LK R+FEVSL DL  +E+HA+RKI+LR ++VQGKN LTNF G++FT+DKLRSLVRKW +LIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA +SQIR IRRKM EI+  +A++C L+ L  K I EVI
Sbjct:   22 DPFARKDWYGIKAPAPFNIRDVGKTLVNRSSGMKNANDALKGRIFEVSLADLQKDEDHAFRKIKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAASSQIRAIRRKMTEIIQREASTCTLQQLTNKLIPEVI 193          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_PODAN (40S ribosomal protein S1 OS=Podospora anserina GN=RPS1 PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.150e-58
Identity = 110/174 (63.22%), Postives = 138/174 (79.31%), Query Frame = 1
Query:  133 AADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            A DPFA+KDWY IKAP+ F +R+VGKTLV RT G K A++ LK R+ EVSL DL  +E+HA+RK++LR ++VQGKN LTNF G++FT+DKLRSLVRKW TLIEA V V+TTD++ LRLF I FTKR PNQ+K+T YA +SQIR IR+KM EI+  +A+SC L+ L  K I EVI
Sbjct:   20 AQDPFARKDWYGIKAPAPFAIRDVGKTLVNRTTGLKNANDALKGRIVEVSLADLQKDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVQTTDHYLLRLFAIAFTKRRPNQIKKTTYAASSQIRAIRKKMTEIIQREASSCTLQQLTSKLIPEVI 193          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_PENMQ (40S ribosomal protein S1 OS=Penicillium marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) GN=rps1 PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.150e-58
Identity = 110/172 (63.95%), Postives = 138/172 (80.23%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF++KD Y +KAPS F++R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G++FT+DKLRSLVRKW +LIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA +SQIR IR+KM EI+  +AASC L  L  K I EVI
Sbjct:   22 DPFSRKDEYSVKAPSTFQIRDVGKTLVNRTTGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAGSSQIRAIRKKMTEIIQREAASCTLSQLTTKLIPEVI 193          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_PERAM (40S ribosomal protein S3a OS=Periplaneta americana GN=Parcxpwex01 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.808e-58
Identity = 111/174 (63.79%), Postives = 134/174 (77.01%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEE--EHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF +KDWYD+KAPS F  R +GKTLV RTQGTKIASEGLK+RVFEVSL DL N+   E ++RK RL AEDVQG+NVLTNF GM+ TTDKLRS+V+KW TLIEA VDVKTTD + LR+FCIGFT +     ++TCYAQ +Q+R IR+KM EI+     S DLK +V K + + I
Sbjct:   23 DPFTRKDWYDVKAPSMFATRQIGKTLVNRTQGTKIASEGLKYRVFEVSLADLQNDNDAERSFRKFRLIAEDVQGRNVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRVFCIGFTNKDQMSQRKTCYAQHTQVRAIRKKMVEIITRDVTSSDLKEVVNKLLPDSI 196          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_NECH7 (40S ribosomal protein S1 OS=Nectria haematococca (strain 77-13-4 / FGSC 9596 / MPVI) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.808e-58
Identity = 110/172 (63.95%), Postives = 135/172 (78.49%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF +KDWY IKAP+ F VR+VGKTLV RT G K A++ LK R+ EVSL DL  +E+HA+RK+RLR ++VQGKN LTNF G++FT+DKLRSLVRKW TLIEA V VKTTD++ +RLF I FTKR PNQ+K+T YA +SQIR IRRKM +I+  +A+SC L  L  K I EVI
Sbjct:   22 DPFTRKDWYSIKAPNPFNVRDVGKTLVNRTTGLKNANDALKGRIVEVSLADLQKDEDHAFRKVRLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLIRLFAIAFTKRRPNQIKKTTYAASSQIRAIRRKMTDIIQREASSCTLTQLTSKLIPEVI 193          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_CALJA (40S ribosomal protein S3a OS=Callithrix jacchus GN=RPS3A PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.808e-58
Identity = 109/172 (63.37%), Postives = 136/172 (79.07%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF+KKDWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL D  N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+VDVKTTD + LRLFC+GFTK+  NQ+++T YAQ  Q+ QIR+KM EIM  +  + DLK +V K I + I
Sbjct:   23 DPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADFQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKHNNQIRKTSYAQHQQVCQIRKKMMEIMTREVQTNDLKEVVNKLIPDSI 193          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_PENCW (40S ribosomal protein S1 OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=rps1 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.789e-58
Identity = 107/172 (62.21%), Postives = 137/172 (79.65%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF +KD Y +KAPS F+ R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR +++QGKN LTNF G++FTTDKLRSLVRKW +LIEA + VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR IR+KM EI+  +A++C L  L  K I EVI
Sbjct:   22 DPFTRKDEYSVKAPSTFQTRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANITVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIIQREASTCTLSQLTHKLIPEVI 193          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_CHAGB (40S ribosomal protein S1 OS=Chaetomium globosum GN=RPS1 PE=3 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 4.789e-58
Identity = 111/174 (63.79%), Postives = 135/174 (77.59%), Query Frame = 1
Query:  133 AADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            A DPF +KDWY IKAP+ F +R+VGKTLV RT G K A++ LK R+ EVSL DL  +E+H++RKI+LR ++VQGKN LTNF G++FT+DKLRSLVRKW TLIEA V V TTD++ LRLF I FTKR PNQ+K+T YA TSQIR IRRKM EI+  +A+SC L  L  K I EVI
Sbjct:   20 AQDPFTRKDWYGIKAPAPFAIRDVGKTLVNRTTGLKNANDALKGRIVEVSLADLQKDEDHSFRKIKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVMTTDHYLLRLFAIAFTKRRPNQIKKTTYAATSQIRAIRRKMTEIIQREASSCTLTQLTSKLIPEVI 193          
The following BLAST results are available for this feature:
BLAST of FC930782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
RS3A_TALSN9.650e-5963.9540S ribosomal protein S1 OS=Talaromyces stipitatus... [more]
RS3A_NEMVE9.650e-5964.5340S ribosomal protein S3a OS=Nematostella vectensi... [more]
RS3A_MAGGR9.650e-5963.9540S ribosomal protein S1 OS=Magnaporthe grisea GN=... [more]
RS3A_PODAN2.150e-5863.2240S ribosomal protein S1 OS=Podospora anserina GN=... [more]
RS3A_PENMQ2.150e-5863.9540S ribosomal protein S1 OS=Penicillium marneffei ... [more]
RS3A_PERAM2.808e-5863.7940S ribosomal protein S3a OS=Periplaneta americana... [more]
RS3A_NECH72.808e-5863.9540S ribosomal protein S1 OS=Nectria haematococca (... [more]
RS3A_CALJA2.808e-5863.3740S ribosomal protein S3a OS=Callithrix jacchus GN... [more]
RS3A_PENCW4.789e-5862.2140S ribosomal protein S1 OS=Penicillium chrysogenu... [more]
RS3A_CHAGB4.789e-5863.7940S ribosomal protein S1 OS=Chaetomium globosum GN... [more]

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Properties
Property NameValue
Genbank descriptionC34109A03EF PostHarvP1 Citrus clementina cDNA clone C34109A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930782 ID=FC930782; Name=FC930782; organism=Citrus clementina; type=EST; length=656bp
GGGTCTCTTCGCTCAAACGAACGAGCTAGGACTAGGTAGCAGCGGAGCCG
TCTCTTGAGCAGCAGCTGCACAAACATGGCTGTCGGGAAGAACAAGAGGA
TTTCAAAGGGGAAGAAAGGAGGCAAGGAGAAGGCTGCTGATCCGTTTGCC
AAGAAGGACTGGTATGATATCAAGGCTCCATCTTGTTTCCGCGTCAGAAA
TGTTGGCAAGACTCTTGTTACCCGGACTCAGGGTACCAAGATTGCATCAG
AAGGTCTCAAGCACAGAGTGTTTGAGGTATCACTAGGTGATCTTCTCAAT
GAAGAAGAGCATGCTTACAGGAAGATCAGACTGAGAGCTGAAGATGTCCA
AGGGAAGAATGTTTTGACTAACTTCTGGGGCATGAATTTCACTACAGACA
AGCTGAGGTCTTTGGTTAGGAAGTGGCATACCTTGATTGAAGCTTACGTG
GATGTCAAGACCACTGATAACTTCACATTGAGGTTGTTCTGCATTGGATT
CACCAAGAGACTTCCAAACCAGGTTAAGAGGACTTGCTACGCACAGACCA
GCCAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGGTTGCTCAG
GCAGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAGT
GATTGG
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