FC930782

Overview
NameFC930782
Unique NameFC930782
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length656
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_SCLS1 (40S ribosomal protein S1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=rps1 PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.169e-58
Identity = 107/172 (62.21%), Postives = 136/172 (79.07%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF +KDWY IKAPS F++R+VGKTLV RT G K A++ LK R+ EVSL DL  +E+HA+RK++LR ++VQGKN LTNF G++FT+DKLRSLVRKW +LIEA + VKTTD++ LRLF I FTKR PNQ+K+T YA +SQIR IR+KM EI+  +A++C L  L  K I EVI
Sbjct:   22 DPFTRKDWYQIKAPSSFQIRDVGKTLVNRTTGLKNANDSLKGRIIEVSLADLQKDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQSLIEANITVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAASSQIRAIRKKMTEIIQREASTCTLTQLTAKLIPEVI 193          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_TRIAD (40S ribosomal protein S3a OS=Trichoplax adhaerens GN=TRIADDRAFT_36460 PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.067e-57
Identity = 110/172 (63.95%), Postives = 136/172 (79.07%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF KKDWYD+KAPS F VRN+GKTLV RT GTKIAS+GLK RVFEVSL DL N E  A+RK RL AE+V GK+VLTNF GM+ T+DKL+SLV+KW TLIEA++D KTTD + LR F IGFTK+ PNQ+K+T YA+TSQ R IR+KM +I+  + ++ DLK +V + I + I
Sbjct:   22 DPFTKKDWYDVKAPSQFAVRNIGKTLVNRTSGTKIASDGLKGRVFEVSLADLQNGEI-AFRKFRLIAEEVLGKSVLTNFHGMSMTSDKLKSLVKKWQTLIEAHIDAKTTDGYLLRFFAIGFTKKRPNQIKKTAYAKTSQCRSIRKKMTDIITREVSAIDLKEVVNRLIPDSI 192          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_EMENI (40S ribosomal protein S1 OS=Emericella nidulans GN=rps1 PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.067e-57
Identity = 109/172 (63.37%), Postives = 135/172 (78.49%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF +KD Y +KAPS F  R+VGKTLV RT G K A++ LK R+FEVSL DL  +E+HA+RK++LR +++QGKN LTNF G++FTTDKLRSLVRKW +LIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +A+SC L  L  K I EVI
Sbjct:   22 DPFTRKDEYSVKAPSTFANRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQGDEDHAFRKVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREASSCSLAQLTSKLIPEVI 193          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_BOTFB (40S ribosomal protein S1 OS=Botryotinia fuckeliana (strain B05.10) GN=rps1 PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.067e-57
Identity = 107/172 (62.21%), Postives = 136/172 (79.07%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF +KDWY IKAPS F++R+VGKTLV RT G K A++ LK R+ EVSL DL  +E+HA+RK++LR ++VQGKN LTNF G++FT+DKLRSLVRKW +LIEA + VKTTD++ LRLF I FTKR PNQ+K+T YA +SQIR IR+KM EI+  +A++C L  L  K I EVI
Sbjct:   22 DPFTRKDWYQIKAPSSFQIRDVGKTLVNRTTGLKNANDSLKGRIVEVSLADLQKDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQSLIEANITVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAASSQIRAIRKKMTEIIQREASTCTLTQLTAKLIPEVI 193          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_CANDC (40S ribosomal protein S1 OS=Candida dubliniensis (strain CD36 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.820e-57
Identity = 104/172 (60.47%), Postives = 137/172 (79.65%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF +KDW+DIKAP+ F  RNVGKTL+ R+ G K A++GLK RVFEV L DL   E+H+YRKI+LR ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V VKT+D++ LR+F I FTKR PNQ+K+T YAQ+S++R++R+KM EIM  + ++C L  L  K I EVI
Sbjct:   22 DPFTRKDWFDIKAPTTFENRNVGKTLINRSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQPNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVI 193          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_CANAW (40S ribosomal protein S1 OS=Candida albicans (strain WO-1) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.820e-57
Identity = 104/172 (60.47%), Postives = 137/172 (79.65%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF +KDW+DIKAP+ F  RNVGKTL+ R+ G K A++GLK RVFEV L DL   E+H+YRKI+LR ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V VKT+D++ LR+F I FTKR PNQ+K+T YAQ+S++R++R+KM EIM  + ++C L  L  K I EVI
Sbjct:   22 DPFTRKDWFDIKAPTTFENRNVGKTLINRSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQPNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVI 193          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_CANAL (40S ribosomal protein S1 OS=Candida albicans GN=RPS1 PE=3 SV=3)

HSP 1 Score: 222.246 bits (565), Expect = 1.820e-57
Identity = 104/172 (60.47%), Postives = 137/172 (79.65%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF +KDW+DIKAP+ F  RNVGKTL+ R+ G K A++GLK RVFEV L DL   E+H+YRKI+LR ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V VKT+D++ LR+F I FTKR PNQ+K+T YAQ+S++R++R+KM EIM  + ++C L  L  K I EVI
Sbjct:   22 DPFTRKDWFDIKAPTTFENRNVGKTLINRSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQPNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVI 193          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_BIPLU (40S ribosomal protein S3a OS=Biphyllus lunatus PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.054e-57
Identity = 109/174 (62.64%), Postives = 132/174 (75.86%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEE--EHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF +KDWYD+KAP  F  R VGKTLV RTQGTKIASEGLKHRVFEVSL DL N+   E ++RK RL AEDVQG+NVLTNF GM+ TTDKLRS+V+KW +LIEA  DVKTTD + LR+FCIGFT +     ++TCYAQ +Q+R IR+KM EI+    +  DLK +V K + + I
Sbjct:   23 DPFTRKDWYDVKAPCMFATRQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQNDNDAERSFRKFRLIAEDVQGRNVLTNFHGMDLTTDKLRSMVKKWQSLIEASADVKTTDGYLLRVFCIGFTNKDQLSQRKTCYAQHTQVRSIRKKMVEIITRDISGSDLKEVVNKLLPDSI 196          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_YARLI (40S ribosomal protein S1 OS=Yarrowia lipolytica GN=RPS1 PE=3 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 1.541e-56
Identity = 108/172 (62.79%), Postives = 137/172 (79.65%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF KKDWY+IKAPS F  R+VGKTLV R+ G ++A++ LK RV EVSL DL  +E+H+++K++LR ++VQGKN+LTNF G +FT+DKLRSLVRKW TLIEA V VKT+D++ LRLF IGFTKR  NQVK+T YAQTSQI QIR+KM +I+V +A++  L  L  K I EVI
Sbjct:   22 DPFTKKDWYNIKAPSTFENRDVGKTLVNRSTGLRLANDYLKGRVLEVSLADLQGQEDHSFKKVKLRVDEVQGKNLLTNFHGFDFTSDKLRSLVRKWQTLIEANVTVKTSDDYFLRLFVIGFTKRQANQVKKTTYAQTSQINQIRKKMTDIVVREASNVTLAQLTAKLIPEVI 193          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_TRIIF (40S ribosomal protein S3a OS=Triatoma infestans PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.012e-56
Identity = 109/174 (62.64%), Postives = 134/174 (77.01%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEE--EHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF +KDWYD+KAPS F  R +GKTLV RTQGTKIASEGLK RVFEVSL DL N+   E +YRK RL AEDVQ +NVLTNF GM+ TTDKLRS+V+KW TLIEA VDV+TTD + LR+FCIGFT +     ++TCYAQ +Q+RQIRRKM + + +  ++ DL+ +V K I + I
Sbjct:   23 DPFTRKDWYDVKAPSMFTTRQIGKTLVNRTQGTKIASEGLKGRVFEVSLADLQNDTDAERSYRKFRLIAEDVQARNVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVRTTDGYLLRVFCIGFTNKDQLSQRKTCYAQHTQVRQIRRKMVDNITSSISNSDLRVVVNKLIPDSI 196          
The following BLAST results are available for this feature:
BLAST of FC930782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
RS3A_SCLS18.169e-5862.2140S ribosomal protein S1 OS=Sclerotinia sclerotior... [more]
RS3A_TRIAD1.067e-5763.9540S ribosomal protein S3a OS=Trichoplax adhaerens ... [more]
RS3A_EMENI1.067e-5763.3740S ribosomal protein S1 OS=Emericella nidulans GN... [more]
RS3A_BOTFB1.067e-5762.2140S ribosomal protein S1 OS=Botryotinia fuckeliana... [more]
RS3A_CANDC1.820e-5760.4740S ribosomal protein S1 OS=Candida dubliniensis (... [more]
RS3A_CANAW1.820e-5760.4740S ribosomal protein S1 OS=Candida albicans (stra... [more]
RS3A_CANAL1.820e-5760.4740S ribosomal protein S1 OS=Candida albicans GN=RP... [more]
RS3A_BIPLU4.054e-5762.6440S ribosomal protein S3a OS=Biphyllus lunatus PE=... [more]
RS3A_YARLI1.541e-5662.7940S ribosomal protein S1 OS=Yarrowia lipolytica GN... [more]
RS3A_TRIIF2.012e-5662.6440S ribosomal protein S3a OS=Triatoma infestans PE... [more]

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Properties
Property NameValue
Genbank descriptionC34109A03EF PostHarvP1 Citrus clementina cDNA clone C34109A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930782 ID=FC930782; Name=FC930782; organism=Citrus clementina; type=EST; length=656bp
GGGTCTCTTCGCTCAAACGAACGAGCTAGGACTAGGTAGCAGCGGAGCCG
TCTCTTGAGCAGCAGCTGCACAAACATGGCTGTCGGGAAGAACAAGAGGA
TTTCAAAGGGGAAGAAAGGAGGCAAGGAGAAGGCTGCTGATCCGTTTGCC
AAGAAGGACTGGTATGATATCAAGGCTCCATCTTGTTTCCGCGTCAGAAA
TGTTGGCAAGACTCTTGTTACCCGGACTCAGGGTACCAAGATTGCATCAG
AAGGTCTCAAGCACAGAGTGTTTGAGGTATCACTAGGTGATCTTCTCAAT
GAAGAAGAGCATGCTTACAGGAAGATCAGACTGAGAGCTGAAGATGTCCA
AGGGAAGAATGTTTTGACTAACTTCTGGGGCATGAATTTCACTACAGACA
AGCTGAGGTCTTTGGTTAGGAAGTGGCATACCTTGATTGAAGCTTACGTG
GATGTCAAGACCACTGATAACTTCACATTGAGGTTGTTCTGCATTGGATT
CACCAAGAGACTTCCAAACCAGGTTAAGAGGACTTGCTACGCACAGACCA
GCCAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGGTTGCTCAG
GCAGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAGT
GATTGG
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