FC930784

Overview
NameFC930784
Unique NameFC930784
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: HNRPF_BOVIN (Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.861e-12
Identity = 49/139 (35.25%), Postives = 72/139 (51.80%), Query Frame = 1
Query:  271 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 672
            VV+LRGLP+ C+  DV  F     I D    V F++ +  + +GEAF  L     V  AL+++R++MG RY+EVF+S R E    + +                  S     D+A + G +RLRGLPF   K++I+ FF
Sbjct:   12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADTA-NDGFVRLRGLPFGCTKEEIIQFF 131          
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: ESRP1_DANRE (Epithelial splicing regulatory protein 1 OS=Danio rerio GN=esrp1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.751e-11
Identity = 42/141 (29.79%), Postives = 72/141 (51.06%), Query Frame = 1
Query:  271 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKILC 684
            V+R RGLP+  ++ D+A FF GL+I      L ++   +  GEA          D ALQR++ +MG RY+EV+++  +++ K        + GG+ +         ++         I+R+RGLPF+A  + ++ FF   C
Sbjct:  226 VIRARGLPWQSSDQDIARFFRGLNIAKGGAALCLNAQGRRNGEALVRFESEEHRDLALQRHKHHMGGRYIEVYKATGEDFLK--------IAGGTSNEVASFLSRENQ--------IIVRMRGLPFNATAEQVLQFFSPAC 350          
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: ESRP1_XENTR (Epithelial splicing regulatory protein 1 OS=Xenopus tropicalis GN=esrp1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 43/141 (30.50%), Postives = 76/141 (53.90%), Query Frame = 1
Query:  271 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKILC 684
            ++R RGLP+  ++ D+A FF GL+I      L ++   +  GEA          D ALQR++ +MG RY+EV+++  +++ K        + GG+ +       +    K++ V   I+R+RGLPF+A  ++++ FF   C
Sbjct:  227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGNRYIEVYKATGEDFLK--------IAGGTSNE-----VAQFLSKENQV---IVRMRGLPFTATAEEVLAFFGQQC 351          
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: ESRP1_XENLA (Epithelial splicing regulatory protein 1 OS=Xenopus laevis GN=esrp1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 43/141 (30.50%), Postives = 76/141 (53.90%), Query Frame = 1
Query:  271 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKILC 684
            ++R RGLP+  ++ D+A FF GL+I      L ++   +  GEA          D ALQR++ +MG RY+EV+++  +++ K        + GG+ +       +    K++ V   I+R+RGLPF+A  ++++ FF   C
Sbjct:  227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGNRYIEVYKATGEDFLK--------IAGGTSNE-----VAQFLSKENQV---IVRMRGLPFTATAEEVLAFFGQQC 351          
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: ESRP1_RAT (Epithelial splicing regulatory protein 1 OS=Rattus norvegicus GN=Esrp1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 45/141 (31.91%), Postives = 76/141 (53.90%), Query Frame = 1
Query:  271 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKILC 684
            VVR RGLP+  ++ D+A FF GL+I      L ++   +  GEA          D ALQR++ +MG RY+EV+++  +++ K        + GG+ +       +    K++ V   I+R+RGLPF+A  ++++ FF   C
Sbjct:  226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNE-----VAQFLSKENQV---IVRMRGLPFTATAEEVVAFFGQHC 350          
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: ESRP1_MOUSE (Epithelial splicing regulatory protein 1 OS=Mus musculus GN=Esrp1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 45/141 (31.91%), Postives = 76/141 (53.90%), Query Frame = 1
Query:  271 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKILC 684
            VVR RGLP+  ++ D+A FF GL+I      L ++   +  GEA          D ALQR++ +MG RY+EV+++  +++ K        + GG+ +       +    K++ V   I+R+RGLPF+A  ++++ FF   C
Sbjct:  225 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNE-----VAQFLSKENQV---IVRMRGLPFTATAEEVVAFFGQHC 349          
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: ESRP1_HUMAN (Epithelial splicing regulatory protein 1 OS=Homo sapiens GN=ESRP1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 45/141 (31.91%), Postives = 76/141 (53.90%), Query Frame = 1
Query:  271 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKILC 684
            VVR RGLP+  ++ D+A FF GL+I      L ++   +  GEA          D ALQR++ +MG RY+EV+++  +++ K        + GG+ +       +    K++ V   I+R+RGLPF+A  ++++ FF   C
Sbjct:  226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNE-----VAQFLSKENQV---IVRMRGLPFTATAEEVVAFFGQHC 350          
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: HNRH2_RAT (Heterogeneous nuclear ribonucleoprotein H2 OS=Rattus norvegicus GN=Hnrnph2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 45/139 (32.37%), Postives = 68/139 (48.92%), Query Frame = 1
Query:  271 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 672
            VV++RGLP+ C+  +V  FF    I +    V F++ +  + +GEAF  L    +V  AL+++R+ MG RYVEVF+S   E    +                   K          + G +RLRGLPF   K++I+ FF
Sbjct:   12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVL-------------------KHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFF 131          
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: HNRH2_MOUSE (Heterogeneous nuclear ribonucleoprotein H2 OS=Mus musculus GN=Hnrnph2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 45/139 (32.37%), Postives = 68/139 (48.92%), Query Frame = 1
Query:  271 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 672
            VV++RGLP+ C+  +V  FF    I +    V F++ +  + +GEAF  L    +V  AL+++R+ MG RYVEVF+S   E    +                   K          + G +RLRGLPF   K++I+ FF
Sbjct:   12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVL-------------------KHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFF 131          
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: HNRH2_PONAB (Heterogeneous nuclear ribonucleoprotein H2 OS=Pongo abelii GN=HNRNPH2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 44/139 (31.65%), Postives = 68/139 (48.92%), Query Frame = 1
Query:  271 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 672
            VV++RGLP+ C+  +V  FF    I +    + F++ +  + +GEAF  L    +V  AL+++R+ MG RYVEVF+S   E    +                   K          + G +RLRGLPF   K++I+ FF
Sbjct:   12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVL-------------------KHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFF 131          
The following BLAST results are available for this feature:
BLAST of FC930784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
HNRPF_BOVIN7.861e-1235.25Heterogeneous nuclear ribonucleoprotein F OS=Bos t... [more]
ESRP1_DANRE1.751e-1129.79Epithelial splicing regulatory protein 1 OS=Danio ... [more]
ESRP1_XENTR2.287e-1130.50Epithelial splicing regulatory protein 1 OS=Xenopu... [more]
ESRP1_XENLA2.287e-1130.50Epithelial splicing regulatory protein 1 OS=Xenopu... [more]
ESRP1_RAT2.987e-1131.91Epithelial splicing regulatory protein 1 OS=Rattus... [more]
ESRP1_MOUSE2.987e-1131.91Epithelial splicing regulatory protein 1 OS=Mus mu... [more]
ESRP1_HUMAN2.987e-1131.91Epithelial splicing regulatory protein 1 OS=Homo s... [more]
HNRH2_RAT5.095e-1132.37Heterogeneous nuclear ribonucleoprotein H2 OS=Ratt... [more]
HNRH2_MOUSE5.095e-1132.37Heterogeneous nuclear ribonucleoprotein H2 OS=Mus ... [more]
HNRH2_PONAB6.655e-1131.65Heterogeneous nuclear ribonucleoprotein H2 OS=Pong... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34109A05EF PostHarvP1 Citrus clementina cDNA clone C34109A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930784 ID=FC930784; Name=FC930784; organism=Citrus clementina; type=EST; length=714bp
GAAGAAGCTCGAAGAAACACAAAGATTAAGAAATAAACAAGGGTTAAAAA
AAAAAAAAAAAATTTGGATAGCTCACGGCTCAACTATTTCAAATTTAAGA
ATGTTCTACAGAGGCAAGTTTGCTGAGGGTGCTGATGGGCGTGAAATGGG
GGCAAAGCGTCAACGGTTGATTGATCAGGGACCTTCATTTCTGGAACTCC
CCCAAGTTCAAGTTTTATGTACAATCCACCACCAGCTTATGGGTACGTTA
GCCAACCTCCACCTTTCCCAGTTGTCCGACTTCGCGGTCTTCCCTTTGAT
TGTACAGAAGTTGATGTTGCTGAGTTTTTCCATGGTCTAGACATAGTCGA
TGTTCTTTTTGTCCATAAGAACAACAAATTTACAGGAGAAGCTTTTTGTG
TGCTGGGGTATCCTCTTCAAGTCGATTTTGCCCTGCAGAGGAATAGGCAG
AACATGGGAAGGAGGTATGTTGAGGTTTTCAGAAGTAAGAGGCAGGAATA
TTATAAGGCAATAGCAAATGAAGTTTCTGATGTTCGTGGTGGTTCACCAC
ATAGGAGTATCCCTAGGGCTAAATCTCATGATGAGGGGAAGGATTCAGCT
GTACATACAGGGATACTGCGATTGAGAGGATTGCCATTTTCAGCAGGCAA
GGATGACATAATGGATTTCTTTAAGATTTTGTGTTGTCGGAAGACTCGAT
TCATATTACTATGA
back to top