FC930784
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: HNRPF_BOVIN (Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus GN=HNRNPF PE=2 SV=3) HSP 1 Score: 70.8626 bits (172), Expect = 7.861e-12 Identity = 49/139 (35.25%), Postives = 72/139 (51.80%), Query Frame = 1 Query: 271 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 672 VV+LRGLP+ C+ DV F I D V F++ + + +GEAF L V AL+++R++MG RY+EVF+S R E + + S D+A + G +RLRGLPF K++I+ FF Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADTA-NDGFVRLRGLPFGCTKEEIIQFF 131
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: ESRP1_DANRE (Epithelial splicing regulatory protein 1 OS=Danio rerio GN=esrp1 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.751e-11 Identity = 42/141 (29.79%), Postives = 72/141 (51.06%), Query Frame = 1 Query: 271 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKILC 684 V+R RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K + GG+ + ++ I+R+RGLPF+A + ++ FF C Sbjct: 226 VIRARGLPWQSSDQDIARFFRGLNIAKGGAALCLNAQGRRNGEALVRFESEEHRDLALQRHKHHMGGRYIEVYKATGEDFLK--------IAGGTSNEVASFLSRENQ--------IIVRMRGLPFNATAEQVLQFFSPAC 350
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: ESRP1_XENTR (Epithelial splicing regulatory protein 1 OS=Xenopus tropicalis GN=esrp1 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11 Identity = 43/141 (30.50%), Postives = 76/141 (53.90%), Query Frame = 1 Query: 271 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKILC 684 ++R RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R+RGLPF+A ++++ FF C Sbjct: 227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGNRYIEVYKATGEDFLK--------IAGGTSNE-----VAQFLSKENQV---IVRMRGLPFTATAEEVLAFFGQQC 351
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: ESRP1_XENLA (Epithelial splicing regulatory protein 1 OS=Xenopus laevis GN=esrp1 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11 Identity = 43/141 (30.50%), Postives = 76/141 (53.90%), Query Frame = 1 Query: 271 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKILC 684 ++R RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R+RGLPF+A ++++ FF C Sbjct: 227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGNRYIEVYKATGEDFLK--------IAGGTSNE-----VAQFLSKENQV---IVRMRGLPFTATAEEVLAFFGQQC 351
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: ESRP1_RAT (Epithelial splicing regulatory protein 1 OS=Rattus norvegicus GN=Esrp1 PE=2 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11 Identity = 45/141 (31.91%), Postives = 76/141 (53.90%), Query Frame = 1 Query: 271 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKILC 684 VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R+RGLPF+A ++++ FF C Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNE-----VAQFLSKENQV---IVRMRGLPFTATAEEVVAFFGQHC 350
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: ESRP1_MOUSE (Epithelial splicing regulatory protein 1 OS=Mus musculus GN=Esrp1 PE=2 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11 Identity = 45/141 (31.91%), Postives = 76/141 (53.90%), Query Frame = 1 Query: 271 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKILC 684 VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R+RGLPF+A ++++ FF C Sbjct: 225 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNE-----VAQFLSKENQV---IVRMRGLPFTATAEEVVAFFGQHC 349
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: ESRP1_HUMAN (Epithelial splicing regulatory protein 1 OS=Homo sapiens GN=ESRP1 PE=1 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11 Identity = 45/141 (31.91%), Postives = 76/141 (53.90%), Query Frame = 1 Query: 271 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKILC 684 VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R+RGLPF+A ++++ FF C Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLK--------IAGGTSNE-----VAQFLSKENQV---IVRMRGLPFTATAEEVVAFFGQHC 350
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: HNRH2_RAT (Heterogeneous nuclear ribonucleoprotein H2 OS=Rattus norvegicus GN=Hnrnph2 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11 Identity = 45/139 (32.37%), Postives = 68/139 (48.92%), Query Frame = 1 Query: 271 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 672 VV++RGLP+ C+ +V FF I + V F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + K + G +RLRGLPF K++I+ FF Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVL-------------------KHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFF 131
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: HNRH2_MOUSE (Heterogeneous nuclear ribonucleoprotein H2 OS=Mus musculus GN=Hnrnph2 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11 Identity = 45/139 (32.37%), Postives = 68/139 (48.92%), Query Frame = 1 Query: 271 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 672 VV++RGLP+ C+ +V FF I + V F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + K + G +RLRGLPF K++I+ FF Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVL-------------------KHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFF 131
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: HNRH2_PONAB (Heterogeneous nuclear ribonucleoprotein H2 OS=Pongo abelii GN=HNRNPH2 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11 Identity = 44/139 (31.65%), Postives = 68/139 (48.92%), Query Frame = 1 Query: 271 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 672 VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL+++R+ MG RYVEVF+S E + K + G +RLRGLPF K++I+ FF Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVL-------------------KHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFF 131 The following BLAST results are available for this feature:
BLAST of FC930784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 24
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930784 ID=FC930784; Name=FC930784; organism=Citrus clementina; type=EST; length=714bpback to top |