FC930784

Overview
NameFC930784
Unique NameFC930784
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: HNRH2_HUMAN (Heterogeneous nuclear ribonucleoprotein H2 OS=Homo sapiens GN=HNRNPH2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 44/139 (31.65%), Postives = 68/139 (48.92%), Query Frame = 1 
Query:  271 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 672
            VV++RGLP+ C+  +V  FF    I +    + F++ +  + +GEAF  L    +V  AL+++R+ MG RYVEVF+S   E    +                   K          + G +RLRGLPF   K++I+ FF
Sbjct:   12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALKKDRETMGHRYVEVFKSNSVEMDWVL-------------------KHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFF 131
[Close]
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: HNRH1_MOUSE (Heterogeneous nuclear ribonucleoprotein H OS=Mus musculus GN=Hnrnph1 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 44/139 (31.65%), Postives = 68/139 (48.92%), Query Frame = 1 
Query:  271 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 672
            VV++RGLP+ C+  +V  FF    I +    + F++ +  + +GEAF  L    +V  AL+++R+ MG RYVEVF+S   E    +                   K          + G +RLRGLPF   K++I+ FF
Sbjct:   12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVL-------------------KHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFF 131
[Close]
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: HNRH1_HUMAN (Heterogeneous nuclear ribonucleoprotein H OS=Homo sapiens GN=HNRNPH1 PE=1 SV=4)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 44/139 (31.65%), Postives = 68/139 (48.92%), Query Frame = 1 
Query:  271 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 672
            VV++RGLP+ C+  +V  FF    I +    + F++ +  + +GEAF  L    +V  AL+++R+ MG RYVEVF+S   E    +                   K          + G +RLRGLPF   K++I+ FF
Sbjct:   12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVL-------------------KHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFF 131
[Close]
BLAST of FC930784 vs. ExPASy Swiss-Prot
Match: HNRH2_BOVIN (Heterogeneous nuclear ribonucleoprotein H2 OS=Bos taurus GN=HNRNPH2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 44/139 (31.65%), Postives = 68/139 (48.92%), Query Frame = 1 
Query:  271 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 672
            VV++RGLP+ C+  +V  FF    I +    + F++ +  + +GEAF  L    +V  AL+++R+ MG RYVEVF+S   E    +                   K          + G +RLRGLPF   K++I+ FF
Sbjct:   12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVL-------------------KHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFF 131
The following BLAST results are available for this feature:
BLAST of FC930784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
HNRH2_HUMAN6.655e-1131.65Heterogeneous nuclear ribonucleoprotein H2 OS=Homo... [more]
HNRH1_MOUSE6.655e-1131.65Heterogeneous nuclear ribonucleoprotein H OS=Mus m... [more]
HNRH1_HUMAN6.655e-1131.65Heterogeneous nuclear ribonucleoprotein H OS=Homo ... [more]
HNRH2_BOVIN8.691e-1131.65Heterogeneous nuclear ribonucleoprotein H2 OS=Bos ... [more]

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Properties
Property NameValue
Genbank descriptionC34109A05EF PostHarvP1 Citrus clementina cDNA clone C34109A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930784 ID=FC930784; Name=FC930784; organism=Citrus clementina; type=EST; length=714bp
GAAGAAGCTCGAAGAAACACAAAGATTAAGAAATAAACAAGGGTTAAAAA
AAAAAAAAAAAATTTGGATAGCTCACGGCTCAACTATTTCAAATTTAAGA
ATGTTCTACAGAGGCAAGTTTGCTGAGGGTGCTGATGGGCGTGAAATGGG
GGCAAAGCGTCAACGGTTGATTGATCAGGGACCTTCATTTCTGGAACTCC
CCCAAGTTCAAGTTTTATGTACAATCCACCACCAGCTTATGGGTACGTTA
GCCAACCTCCACCTTTCCCAGTTGTCCGACTTCGCGGTCTTCCCTTTGAT
TGTACAGAAGTTGATGTTGCTGAGTTTTTCCATGGTCTAGACATAGTCGA
TGTTCTTTTTGTCCATAAGAACAACAAATTTACAGGAGAAGCTTTTTGTG
TGCTGGGGTATCCTCTTCAAGTCGATTTTGCCCTGCAGAGGAATAGGCAG
AACATGGGAAGGAGGTATGTTGAGGTTTTCAGAAGTAAGAGGCAGGAATA
TTATAAGGCAATAGCAAATGAAGTTTCTGATGTTCGTGGTGGTTCACCAC
ATAGGAGTATCCCTAGGGCTAAATCTCATGATGAGGGGAAGGATTCAGCT
GTACATACAGGGATACTGCGATTGAGAGGATTGCCATTTTCAGCAGGCAA
GGATGACATAATGGATTTCTTTAAGATTTTGTGTTGTCGGAAGACTCGAT
TCATATTACTATGA
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