FC930785

Overview
NameFC930785
Unique NameFC930785
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP117_ARATH (Pentatricopeptide repeat-containing protein At1g73400, mitochondrial OS=Arabidopsis thaliana GN=At1g73400 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.625e-18
Identity = 59/214 (27.57%), Postives = 105/214 (49.07%), Query Frame = 3
Query:   60 HHDLELSLNTFTPRISTNLVEQVLKRCKNLGFSAHRFFLWAKRIPGFEHSAGSYHILVDILGSTK----QFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEA 689
            + D+E +L+  +  ++T +V ++L+R +    +A RFF WA     + H   +Y+ ++DIL STK    QF ++ D L  ++ N    +  ++   +LR Y    L +    A  + +    +P I   + LL ALCK   VK         +H   P   T+++L  G   V +  +A KL +EM+E     +   + + ++  C+AG +DEA
Sbjct:  109 YDDMEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDILSSTKYKNKQFRIVIDMLDYMKRNNKTVVLVDVLLEILRKYCERYLTHVQKFAKRKRIRVKTQPEINAFNMLLDALCKCGLVKEGEALLRRMRHRVKPDANTFNVLFFGWCRVRDPKKAMKLLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEA 322          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PPR59_ARATH (Putative pentatricopeptide repeat-containing protein At1g26500 OS=Arabidopsis thaliana GN=At1g26500 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.637e-18
Identity = 60/194 (30.93%), Postives = 99/194 (51.03%), Query Frame = 3
Query:  120 EQVLKRCKNLGFS---AHRFFLWAK-RIPGFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEA 689
            E  L+ C N   S    HRFFL+++   P F H++ + + ++ I+G+++   L W+   EI +     +N + F IVL+  A A      +  F+ M  FG   ++  +++ +  LCK K V+ A   F   K    P   TY  +++G  DVG+L EA KL++ M++    VDI A   ++E + K    DEA
Sbjct:   78 EFFLQVCNNFPLSWRPVHRFFLYSQTHHPDFTHTSTTSNKMLAIIGNSRNMDLFWELAQEIGKRGL--VNDKTFRIVLKTLASARELKKCVNYFHLMNGFGYLYNVETMNRGVETLCKEKLVEEAKFVFIKLKEFIKPDEITYRTMIQGFCDVGDLIEAAKLWNLMMDEGFDVDIEAGKKIMETLLKKNQFDEA 269          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP298_ARATH (Pentatricopeptide repeat-containing protein At4g01400, mitochondrial OS=Arabidopsis thaliana GN=At4g01400 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17
Identity = 55/183 (30.05%), Postives = 99/183 (54.10%), Query Frame = 3
Query:  159 AHRFFLWAKRIPGFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCK-RKHVKVAHQFFDNAK-HEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGML 701
            A   F +A + P F HS  S+ IL+  LG  + F L+ D L + R +  + +  EIF  +++ YA A LP   +  F +M+EF   P    L+++L  L   R +++ A + F +++ H   P  ++Y++L++      +LS A +LF +MLER    D+ ++  L++  C+ G ++ A  +L
Sbjct:   67 AKEIFDYASQQPNFRHSRSSHLILILKLGRGRYFNLIDDVLAKHRSS-GYPLTGEIFTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQPKHLNRILDVLVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELL 248          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP375_ARATH (Pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Arabidopsis thaliana GN=At5g11310 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17
Identity = 64/233 (27.47%), Postives = 112/233 (48.07%), Query Frame = 3
Query:   57 PHHDLELSLNTFTPRISTNLVEQVLKRCKNLGFSAHRFFLWAKRIPGFEHSAGSYHILVDILGSTKQFALLWDFLIE-IRENQ-SFEINPEIFWIVLRAYARANLPNDAIRAFN--RMVEFGIKPS--IYDLDQLLHALCKRKHVKVAHQFFD----NAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRECVPLEL 725
            P   LE +L+      S  LV  +  R  +     H  F WA+  PGF  S   +  +V+ L   ++F + W  + + +R ++ S  ++ + F +++R YARA +   AIRAF   R  E   K +  +  L+ LL ALCK  HV+ A  + +         + P+V+ ++IL+ G     +L +A KL++EM        ++ + +L+E  C+   +  A  +L E    E+
Sbjct:   84 PGSSLESALDETGIEPSVELVHALFDRLSSSPMLLHSVFKWAEMKPGFTLSPSLFDSVVNSLCKAREFEIAWSLVFDRVRSDEGSNLVSADTFIVLIRRYARAGMVQQAIRAFEFARSYEPVCKSATELRLLEVLLDALCKEGHVREASMYLERIGGTMDSNWVPSVRIFNILLNGWFRSRKLKQAEKLWEEMKAMNVKPTVVTYGTLIEGYCRMRRVQIAMEVLEEMKMAEM 316          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP233_ARATH (Putative pentatricopeptide repeat-containing protein At3g15200 OS=Arabidopsis thaliana GN=At3g15200 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.881e-16
Identity = 43/162 (26.54%), Postives = 89/162 (54.94%), Query Frame = 3
Query:  219 YHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLR 704
            Y+ ++D+LG  ++F        E+ +   F +N + + ++L  YA A+  ++A+  F R  EFGI   +     LL  LC+ KHV+ A   F + + EF   +K  ++++ G   +G + EA++ + +++  KC  D++++ +++ A+ K G + +A  + R
Sbjct:  146 YNEILDVLGKMRRFEEFHQVFDEMSKRDGF-VNEKTYEVLLNRYAAAHKVDEAVGVFERRKEFGIDDDLVAFHGLLMWLCRYKHVEFAETLFCSRRREFGCDIKAMNMILNGWCVLGNVHEAKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAMELYR 306          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP211_ARATH (Pentatricopeptide repeat-containing protein At3g04130, mitochondrial OS=Arabidopsis thaliana GN=At3g04130 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.208e-16
Identity = 53/202 (26.24%), Postives = 99/202 (49.01%), Query Frame = 3
Query:  102 ISTNLVEQVLKRCKNLGFSAHRFFLWAKRIPGFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRE 707
            +S  LV ++L R ++   SA     WA+   G +HS+ +Y + VDILG  K++  + +F+  +R ++   +N      ++R +A A    +A+  F+R+ EFG++ +   ++ LL  LCK K V+ A       K   TP   T++I + G      + EA     EM        ++++ +++   C+     + + ML E
Sbjct:   85 LSDGLVHKLLHRFRDDWRSALGILKWAESCKGHKHSSDAYDMAVDILGKAKKWDRMKEFVERMRGDKLVTLNTVAK--IMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSE 284          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP391_ARATH (Pentatricopeptide repeat-containing protein At5g18390, mitochondrial OS=Arabidopsis thaliana GN=At5g18390 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.473e-16
Identity = 61/232 (26.29%), Postives = 110/232 (47.41%), Query Frame = 3
Query:   12 DLVSEISRVLSDHRDPHHDLELSLNTFTPRISTNLVEQVLKRCKNLGFSAHRFFLWAKRIPGFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVE-FGIKPSIYDLDQLLHALCKRKHVKVAHQFFDN-AKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGML 701
            D  + I+ V++  R   H  E SLN+    +++  V +VL+        + RFF WA+  P +  ++  Y  L   L S K++  +W  L ++++  S +I+ E    ++  Y +    + A+  FN + +  G + ++   + LLHALC  K    A+       +    P  +TY+ILV G    G++ EA++  DEM  R         + L+E +  AG ++ A  M+
Sbjct:   46 DYFAAINHVVNIVRREIHP-ERSLNSLRLPVTSEFVFRVLRATSRSSNDSLRFFNWARSNPSYTPTSMEYEELAKSLASHKKYESMWKILKQMKD-LSLDISGETLCFIIEQYGKNGHVDQAVELFNGVPKTLGCQQTVDVYNSLLHALCDVKMFHGAYALIRRMIRKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSRRGFNPPARGRDLLIEGLLNAGYLESAKEMV 275          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP160_ARATH (Pentatricopeptide repeat-containing protein At2g17525, mitochondrial OS=Arabidopsis thaliana GN=At2g17525 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.592e-15
Identity = 52/181 (28.73%), Postives = 86/181 (47.51%), Query Frame = 3
Query:  171 FLWAKRIPGFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDN--AKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRE 707
            F WA   PGF HS  +Y  L   L   ++F  ++  L E+ ++     +  IF  ++R + RA L    I   + + +FGIKPS+   + +L  L K + + +A +FF            V TY IL++GL     + +  KL   M       + + +N+LL A+CK G +  A  ++ E
Sbjct:   63 FRWASTFPGFIHSRSTYRALFHKLCVFRRFDTVYQLLDEMPDSIGLPPDDAIFVTIIRGFGRARLIKRVISVVDLVSKFGIKPSLKVFNSILDVLVK-EDIDIAREFFTRKMMASGIHGDVYTYGILMKGLSLTNRIGDGFKLLQIMKTSGVAPNAVVYNTLLHALCKNGKVGRARSLMSE 242          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PPR9_ARATH (Pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.080e-15
Identity = 42/131 (32.06%), Postives = 71/131 (54.20%), Query Frame = 3
Query:  315 NPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHE-FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLR 704
            N  I+ +++  YA++    DAIR  +RM++ G KP +     +++ LCK   V+ A  +F   + +        YS L+ GLG  G + EA +LF+EM E+ C  D   +N+L++A  K   +DEA  + +
Sbjct:  361 NVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFK 491          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP328_ARATH (Pentatricopeptide repeat-containing protein At4g20740 OS=Arabidopsis thaliana GN=At4g20740 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.051e-15
Identity = 57/228 (25.00%), Postives = 109/228 (47.81%), Query Frame = 3
Query:    3 PSADLVSEISRVLSDHRDPHHDLELSLNTFTPRISTNLVEQVLKRCKNLGFSAHRFFLWAKRIPGFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHE-FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNID 683
            P A  V +  R   +H  P    EL+      R++ ++V +VLK   +   +A +FF WA +  G++H   +Y+     L     F    D L E+ ++Q    + + F I++R +A           + +M +FG KP ++  ++++ AL K  +  +A   +++ K +       T+ ILV+GL   G + E  ++   M E  C  D+ A+ ++++ +   GN+D
Sbjct:   93 PIARFVLDAFRKNRNHWGPSVVSELNK---LRRVTPSIVAEVLKLGNDAAVAA-KFFHWAGKQKGYKHDFAAYNAFAYCLNRNGHFRAA-DQLPELMDSQGRPPSEKQFEILIRMHADNRRGLRVYYVYEKMKKFGFKPRVFLYNRIMDALVKNGYFDLALAVYEDFKEDGLVEESTTFMILVKGLCKAGRIEEMLEILQRMRENLCKPDVFAYTAMIKTLVSEGNLD 315          
The following BLAST results are available for this feature:
BLAST of FC930785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
PP117_ARATH2.625e-1827.57Pentatricopeptide repeat-containing protein At1g73... [more]
PPR59_ARATH7.637e-1830.93Putative pentatricopeptide repeat-containing prote... [more]
PP298_ARATH1.701e-1730.05Pentatricopeptide repeat-containing protein At4g01... [more]
PP375_ARATH4.950e-1727.47Pentatricopeptide repeat-containing protein At5g11... [more]
PP233_ARATH1.881e-1626.54Putative pentatricopeptide repeat-containing prote... [more]
PP211_ARATH3.208e-1626.24Pentatricopeptide repeat-containing protein At3g04... [more]
PP391_ARATH5.473e-1626.29Pentatricopeptide repeat-containing protein At5g18... [more]
PP160_ARATH1.592e-1528.73Pentatricopeptide repeat-containing protein At2g17... [more]
PPR9_ARATH2.080e-1532.06Pentatricopeptide repeat-containing protein At1g03... [more]
PP328_ARATH6.051e-1525.00Pentatricopeptide repeat-containing protein At4g20... [more]

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Properties
Property NameValue
Genbank descriptionC34109A06EF PostHarvP1 Citrus clementina cDNA clone C34109A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930785 ID=FC930785; Name=FC930785; organism=Citrus clementina; type=EST; length=733bp
GACCATCAGCAGACCTTGTTAGCGAAATTTCCCGCGTTTTAAGCGACCAC
AGGGACCCCCACCACGACTTGGAACTTTCCCTCAATACATTCACTCCAAG
AATATCCACAAACTTAGTTGAACAAGTCTTAAAAAGGTGCAAGAATCTTG
GGTTCTCCGCTCACAGATTCTTTCTTTGGGCCAAAAGAATCCCTGGTTTT
GAACACAGTGCTGGTAGCTATCACATTTTGGTGGATATATTAGGAAGTAC
CAAGCAGTTTGCTTTATTATGGGATTTTTTGATAGAGATTAGGGAGAATC
AGTCTTTTGAAATAAACCCAGAAATTTTTTGGATTGTTCTTAGAGCTTAT
GCTAGAGCTAACTTACCTAATGATGCCATTAGGGCTTTTAATAGAATGGT
AGAGTTTGGTATTAAGCCTAGCATTTATGATCTTGATCAGCTGTTGCATG
CTTTGTGCAAAAGAAAGCATGTGAAGGTTGCCCATCAATTTTTTGACAAT
GCTAAGCATGAATTTACTCCAACTGTGAAAACCTATAGCATTTTGGTGAG
GGGGCTGGGTGATGTTGGTGAGTTGAGTGAAGCGCGTAAGTTGTTCGATG
AAATGCTTGAGAGAAAATGTCCGGTTGATATTCTTGCGCATAATAGTCTA
TTGGAAGCTATGTGCAAAGCGGGTAATATTGATGAAGCGCATGGAATGCT
TAGAGAATGCGTTCCATTGGAGCTGAGCAGATG
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