FC930785

Overview
NameFC930785
Unique NameFC930785
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP409_ARATH (Pentatricopeptide repeat-containing protein At5g40400 OS=Arabidopsis thaliana GN=At5g40400 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 63/262 (24.05%), Postives = 105/262 (40.08%), Query Frame = 3
Query:   66 DLELSLNTFTPRISTNLVEQVLKRCKNLGFSAHRFFLWAKRIPGFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQS-------FEI----------NPEIFWIVLRAYARANLPNDAIRAFNR-----------------------------------MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHE-FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAH 692
            +L   + +  P +    + +VL R ++    A  FF W K   G   + G+Y +L+ IL S+K+F L   FL E+ E  S       F +          +P +F ++++ Y +  L  +  R F                                     M   GI P+ Y  + L +  C   + +    F +  + E F P + TY+ LV      G L EA  L+  M  R+   D++ + SL++ +CK G + EAH
Sbjct:   65 NLRDEVKSLIPHLGYPEISRVLLRFQSDASRAITFFKWVKFDLGKRPNVGNYCLLLHILVSSKKFPLAMQFLCELIELTSKKEEVDVFRVLVSATDECNWDPVVFDMLVKGYLKLGLVEEGFRVFREVLDSGFSVSVVTCNHLLNGLLKLDLMEDCWQVYSVMCRVGIHPNTYTFNILTNVFCNDSNFREVDDFLEKMEEEGFEPDLVTYNTLVSSYCRRGRLKEAFYLYKIMYRRRVVPDLVTYTSLIKGLCKDGRVREAH 326          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP291_ARATH (Pentatricopeptide repeat-containing protein At3g61360 OS=Arabidopsis thaliana GN=At3g61360 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 54/231 (23.38%), Postives = 106/231 (45.89%), Query Frame = 3
Query:   18 VSEISRVLSDHRDPHHDLELSLNTFTP--RISTNLVEQVLKR---CKNLGFSAHRFFLWAKRIPGFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVE--FGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEA 689
            +  I+ +++ H  P+H ++  L    P   +S   V +VL R     + G  A  FF ++ +      ++ S+   + IL   + F   W  + E+R++    ++ +   I+L   A+     + + AF +M +  F  K  + + + LL A C  + +K A   F+     F P VKT +IL+ G  + G+++     + EM++R    + + +   ++  CK  N  EA
Sbjct:   34 IERITIIINGHPFPNHPIQPILAKHIPLSSLSPEFVSEVLGRLFAAHSNGLKALEFFKYSLKSSKSSPTSDSFEKTLHILARMRYFDQAWALMAEVRKDYPNLLSFKSMSILLCKIAKFGSYEETLEAFVKMEKEIFRKKFGVDEFNILLRAFCTEREMKEARSIFEKLHSRFNPDVKTMNILLLGFKEAGDVTATELFYHEMVKRGFKPNSVTYGIRIDGFCKKRNFGEA 264          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PPR79_ARATH (Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis thaliana GN=At1g53330 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.490e-13
Identity = 48/173 (27.75%), Postives = 83/173 (47.98%), Query Frame = 3
Query:  198 FEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEA----HGMLR 704
            F +S   Y I++  LG +K F  L   L+ ++ +        IF  V+  + R  LP+ A+  F+ M ++  + ++  L+ LL AL K   ++   +   +      P   TY+IL+ G    G   +A KLFDEM+++K     +   +L+  +CK   + EA    H ML+
Sbjct:   43 FRYSLLCYDIIITKLGGSKMFDELDQVLLHLKTDTRIVPTEIIFCNVINFFGRGKLPSRALHMFDEMPQYRCQRTVKSLNSLLSALLKCGELEKMKERLSSIDEFGKPDACTYNILIHGCSQSGCFDDALKLFDEMVKKKVKPTGVTFGTLIHGLCKDSRVKEALKMKHDMLK 215          

HSP 2 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 44/131 (33.59%), Postives = 71/131 (54.20%), Query Frame = 3
Query:  333 IVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFT------PTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRE 707
            I++   +++   +DA++ F+ MV+  +KP+      L+H LCK   VK A +     KH+        PTV  Y+ L++ L  +GELS A KL DE  E K  VD   +++L+ ++ KAG  +E   +L E
Sbjct:  157 ILIHGCSQSGCFDDALKLFDEMVKKKVKPTGVTFGTLIHGLCKDSRVKEALKM----KHDMLKVYGVRPTVHIYASLIKALCQIGELSFAFKLKDEAYEGKIKVDAAIYSTLISSLIKAGRSNEVSMILEE 283          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP136_ARATH (Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidopsis thaliana GN=At1g80550 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.542e-13
Identity = 50/189 (26.46%), Postives = 96/189 (50.79%), Query Frame = 3
Query:  159 AHRFFLWAKRIPGFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIK--PSIYDLDQLLHALCKRKHVKVAHQ--FFDN--AKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRE 707
            A  FF W +R  GF H+  +++ ++DILG   +F + W  +  +  N     N   F IV + Y  A+L  +AI A++++ +F ++   S Y+   L+ ALC+ KHV  A +  F  N           K +++++RG   +G   + ++ + +M       D+ +++  ++ MCK+G   +A  + +E
Sbjct:   64 ALEFFNWVERESGFRHTTETFNRVIDILGKYFEFEISWALINRMIGNTESVPNHVTFRIVFKRYVTAHLVQEAIDAYDKLDDFNLRDETSFYN---LVDALCEHKHVVEAEELCFGKNVIGNGFSVSNTKIHNLILRGWSKLGWWGKCKEYWKKMDTEGVTKDLFSYSIYMDIMCKSGKPWKAVKLYKE 249          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PPR12_ARATH (Pentatricopeptide repeat-containing protein At1g05665, mitochondrial OS=Arabidopsis thaliana GN=At1g05665 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.663e-13
Identity = 49/178 (27.53%), Postives = 84/178 (47.19%), Query Frame = 3
Query:  159 AHRFFLWAKRIPGFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFF-DNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEA 689
            AH   L  + + G+     SY  +V+      +   +W  LIE+ + +  + N  I+  ++    R     +A  AF+ M+  GI P       L+   CKR  ++ A +FF +    + TP V TY+ ++ G   +G++ EA KLF EM  +    D +    L+   CKAG++ +A
Sbjct:  265 AHHLLLLME-LKGYTPDVISYSTVVNGYCRFGELDKVWK-LIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDA 440          

HSP 2 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 38/128 (29.69%), Postives = 63/128 (49.22%), Query Frame = 3
Query:  327 FWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNA-KHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRE 707
            F  ++  Y +A    DA R  N M++ G  P++     L+  LCK   +  A++      K    P + TY+ +V GL   G + EA KL  E        D + + +L++A CK+G +D+A  +L+E
Sbjct:  424 FTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKE 551          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP439_ARATH (Pentatricopeptide repeat-containing protein At5g61370, mitochondrial OS=Arabidopsis thaliana GN=At5g61370 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.663e-13
Identity = 60/243 (24.69%), Postives = 107/243 (44.03%), Query Frame = 3
Query:    6 SADLVSEISRVLSDHRDPHHDLELSLNTFTPRISTNLVEQVLKRCKNLGFSAH--RFFLWAKRIPGFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPT-VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRECVPLEL 725
            S   + E+ R++S       DLE +LN  +   S+NLV QV++ CKN        RFF W+ +  G       ++ ++ +L   K    +   L ++R+ ++  ++ + F IV     +     DAI  F  + +F      + +  ++ ALC R HVK A     + K   +   +  Y  L+ G      + EAR++  +M       D+   NSLL  +C+        G++ E + + L
Sbjct:   33 SETALHEVIRIVSSPVGGLDDLEENLNQVSVSPSSNLVTQVIESCKNETSPRRLLRFFSWSCKSLGSSLHDKEFNYVLRVLAEKKDHTAMQILLSDLRK-ENRAMDKQTFSIVAETLVKVGKEEDAIGIFKILDKFSCPQDGFTVTAIISALCSRGHVKRALGVMHHHKDVISGNELSVYRSLLFGWSVQRNVKEARRVIQDMKSAGITPDLFCFNSLLTCLCERNVNRNPSGLVPEALNIML 274          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP437_ARATH (Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.663e-13
Identity = 63/254 (24.80%), Postives = 117/254 (46.06%), Query Frame = 3
Query:   18 VSEISRVLSDHRDPHHDLELSLNTFTPRISTNLVEQVLKRCKNLGFSAHRFFLWAKRIPGFEHSAGSYHILVDILGSTKQF----ALLWDFLIE-IRENQSFEI-----------NPEIFWIVLRAYARANLPNDAIRAFNRMV-EFGIKPSIYDLDQLLHALCKRKHVKVAHQFF-DNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRECVPLEL 725
            V  + R++   R    ++ LS    + R+ T  VE++L    +      RFF +     GF+HS  S+ IL+  L     F    +LL   L+  ++ +  F +           +   F ++++ Y R+    D +  F  M+ +  + P +  L  LLH L K +H  +A + F D       P V  Y+ ++R L ++ +LS A+++   M    C V+I+ +N L++ +CK   + EA G+ ++    +L
Sbjct:   42 VDAVKRIVRGKRS--WEIALSSELVSRRLKTVHVEEILIGTIDDPKLGLRFFNFLGLHRGFDHSTASFCILIHALVKANLFWPASSLLQTLLLRALKPSDVFNVLFSCYEKCKLSSSSSFDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDL 293          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP344_ARATH (Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.663e-13
Identity = 41/134 (30.60%), Postives = 76/134 (56.72%), Query Frame = 3
Query:  333 IVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKH-EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRE-----CVP 716
            ++++ Y++    ++AI+  + M+E G +P +  ++ L++ L K   V  A + F   K  +  PTV TY+ L+ GLG  G++ EA +LF+ M+++ CP + +  N+L + +CK   +  A  ML +     CVP
Sbjct:  508 MMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVP 641          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP444_ARATH (Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.397e-13
Identity = 48/175 (27.43%), Postives = 85/175 (48.57%), Query Frame = 3
Query:  186 RIPGFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFF-DNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRE 707
            R  G + +  SY ILVD      +    ++ L E+  +   + N   F  ++ A+ + +   +A+  F  M   G KP +Y  + L+  LC+   +K A     D           TY+ L+      GE+ EARKL +EM+ +  P+D + +NSL++ +C+AG +D+A  +  +
Sbjct:  416 RNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSAD-GLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEK 589          

HSP 2 Score: 70.4774 bits (171), Expect = 1.068e-11
Identity = 52/224 (23.21%), Postives = 103/224 (45.98%), Query Frame = 3
Query:   66 DLELSLNTFTPRISTNLVEQVLKRCKNLGFSAHRFFLWAKRIPGFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVE-FGIKPSIYDLDQLLHALCKRK-HVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRE-----CVP 716
            DL+   N+F  +I+   + ++L+   N+  S    F W     G+ HS   Y +L+  LG+  +F  +   LI++++ +       +F  ++R Y +A  P    R    M   +  +P+    + +L  L     H   A+ F+D    +  PT+ T+ ++++    V E+  A  L  +M +  C  + + + +L+ ++ K   ++EA  +L E     CVP
Sbjct:   65 DLDSLRNSFH-KITPFQLYKLLELPLNVSTSME-LFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKD-EGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVP 285          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP143_ARATH (Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.397e-13
Identity = 59/238 (24.79%), Postives = 99/238 (41.60%), Query Frame = 3
Query:  117 VEQVLKRCKNLGFSAHRFFLWAKRIPGFEHSAGSY----HILV-------------------------DILGSTKQ--------FALLWDFLIEI----------RENQSFEINPEIFWI--VLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHE-FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNI 680
            V +VL   K     A +FF W+    GF+HS  SY    HIL                          D+L ST+         F  L+  LI++           + + F + P+      +L  +A+    +D  R F  M+  G +P+++  + ++  +CK   V+ A   F+  K     P   TY+ ++ G G VG L +    F+EM +  C  D++ +N+L+   CK G +
Sbjct:  111 VPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSKADCDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKL 348          
The following BLAST results are available for this feature:
BLAST of FC930785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
PP409_ARATH1.141e-1324.05Pentatricopeptide repeat-containing protein At5g40... [more]
PP291_ARATH1.141e-1323.38Pentatricopeptide repeat-containing protein At3g61... [more]
PPR79_ARATH1.490e-1327.75Putative pentatricopeptide repeat-containing prote... [more]
PP136_ARATH2.542e-1326.46Pentatricopeptide repeat-containing protein At1g80... [more]
PPR12_ARATH5.663e-1327.53Pentatricopeptide repeat-containing protein At1g05... [more]
PP439_ARATH5.663e-1324.69Pentatricopeptide repeat-containing protein At5g61... [more]
PP437_ARATH5.663e-1324.80Putative pentatricopeptide repeat-containing prote... [more]
PP344_ARATH5.663e-1330.60Pentatricopeptide repeat-containing protein At4g31... [more]
PP444_ARATH7.397e-1327.43Pentatricopeptide repeat-containing protein At5g64... [more]
PP143_ARATH7.397e-1324.79Putative pentatricopeptide repeat-containing prote... [more]

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Properties
Property NameValue
Genbank descriptionC34109A06EF PostHarvP1 Citrus clementina cDNA clone C34109A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930785 ID=FC930785; Name=FC930785; organism=Citrus clementina; type=EST; length=733bp
GACCATCAGCAGACCTTGTTAGCGAAATTTCCCGCGTTTTAAGCGACCAC
AGGGACCCCCACCACGACTTGGAACTTTCCCTCAATACATTCACTCCAAG
AATATCCACAAACTTAGTTGAACAAGTCTTAAAAAGGTGCAAGAATCTTG
GGTTCTCCGCTCACAGATTCTTTCTTTGGGCCAAAAGAATCCCTGGTTTT
GAACACAGTGCTGGTAGCTATCACATTTTGGTGGATATATTAGGAAGTAC
CAAGCAGTTTGCTTTATTATGGGATTTTTTGATAGAGATTAGGGAGAATC
AGTCTTTTGAAATAAACCCAGAAATTTTTTGGATTGTTCTTAGAGCTTAT
GCTAGAGCTAACTTACCTAATGATGCCATTAGGGCTTTTAATAGAATGGT
AGAGTTTGGTATTAAGCCTAGCATTTATGATCTTGATCAGCTGTTGCATG
CTTTGTGCAAAAGAAAGCATGTGAAGGTTGCCCATCAATTTTTTGACAAT
GCTAAGCATGAATTTACTCCAACTGTGAAAACCTATAGCATTTTGGTGAG
GGGGCTGGGTGATGTTGGTGAGTTGAGTGAAGCGCGTAAGTTGTTCGATG
AAATGCTTGAGAGAAAATGTCCGGTTGATATTCTTGCGCATAATAGTCTA
TTGGAAGCTATGTGCAAAGCGGGTAATATTGATGAAGCGCATGGAATGCT
TAGAGAATGCGTTCCATTGGAGCTGAGCAGATG
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