FC930785

Overview
NameFC930785
Unique NameFC930785
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP288_ARATH (Pentatricopeptide repeat-containing protein At3g60050 OS=Arabidopsis thaliana GN=At3g60050 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 54/206 (26.21%), Postives = 95/206 (46.12%), Query Frame = 3
Query:   81 LNTFTPRISTNLVEQVLKRC-KNLGFS--------AHRFFLWAKRIPGFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHE-FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCK 668
            L+    R+S  LV +VL    +NL +         A+RFFLW+     F H+  SYH+L+ I     ++  +W  + E+ ++  F      F +++ +   A L   A+  F +   F  +P  +  + +L++L   K  K+    +     + F+P V TY+IL+     +G++    +LFDEM       D   +N LL  + K
Sbjct:   97 LDELNVRVSGLLVREVLVGILRNLSYDNKARCAKLAYRFFLWSGEQECFRHTVNSYHLLMKIFAECGEYKAMWRLVDEMVQD-GFPTTARTFNLLICSCGEAGLAKQAVVQFMKSKTFNYRPFKHSYNAILNSLLGVKQYKLIEWVYKQMLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEMARDGFSPDSYTYNILLHILGK 301          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP190_ARATH (Pentatricopeptide repeat-containing protein At2g37230 OS=Arabidopsis thaliana GN=At2g37230 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 50/224 (22.32%), Postives = 105/224 (46.88%), Query Frame = 3
Query:   39 LSDHRDPHHDLELSLNTFTPRISTNLVEQVLKRCKNLGFSAHRFFLWAKRIPGFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHE-FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRE 707
            + D+R     L+ S+    P    +LV  VL   K L   A +FF W +R     H   ++  ++ +LG   +       L+++ E +    + ++F +++ +Y +A +  ++++ F +M + G++ +I   + L   + +R    +A ++F+    E   PT  TY++++ G      L  A + F++M  R    D    N+++   C+   +DEA  +  E
Sbjct:   94 MMDNRAWTTRLQNSIRDLVPEWDHSLVYNVLHGAKKLEH-ALQFFRWTERSGLIRHDRDTHMKMIKMLGEVSKLNHARCILLDMPE-KGVPWDEDMFVVLIESYGKAGIVQESVKIFQKMKDLGVERTIKSYNSLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETALRFFEDMKTRGISPDDATFNTMINGFCRFKKMDEAEKLFVE 315          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PPR96_ARATH (Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 44/152 (28.95%), Postives = 71/152 (46.71%), Query Frame = 3
Query:  279 LIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFF-DNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGML-----RECVP 716
            L++  E    E +  I+  ++ A       NDA+  F  M   GI+P++   + L+  LC       A +   D  + +  P V T+S L+      G+L EA KL+DEM++R    DI  ++SL+   C    +DEA  M      ++C P
Sbjct:  242 LLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 393          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP389_ARATH (Pentatricopeptide repeat-containing protein At5g16640, mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 50/183 (27.32%), Postives = 89/183 (48.63%), Query Frame = 3
Query:  171 FLWAK-RIPGFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDN-AKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRECV 713
            +LW + ++ G  H+  + +IL++      Q +L   FL ++ +    E +   F  +L  + R +   DA+  F++MV  G KP++   + ++  LCK K V  A    +   K    P V TY+ L+ GL   G  S+A ++   M +R+   D+   N+L++A  K G + EA     E +
Sbjct:  102 YLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIK-LGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMI 283          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP236_ARATH (Pentatricopeptide repeat-containing protein At3g16010 OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 41/126 (32.54%), Postives = 68/126 (53.97%), Query Frame = 3
Query:  333 IVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEF-TPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRE 707
            I++  Y + N    A+     M E G  P       L++AL K K  + A++ F   K  F   + + Y+++++  G  G+LSEA  LF+EM  +    D+ A+N+L+  M KAG I+EA+ +LR+
Sbjct:  414 ILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRK 539          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP102_ARATH (Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 47/180 (26.11%), Postives = 85/180 (47.22%), Query Frame = 3
Query:  195 GFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFF-DNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGML-----RECVP 716
            G + +  +Y ++V+ L       L ++ L ++ E    E N  I+  V+ +  +    +DA+  F  M   G++P++     L+  LC  +    A +   D  + +  P V T++ L+      G+L EA KL+DEM++R    DI  ++SL+   C    +DEA  M      ++C P
Sbjct:  220 GCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM-EAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 398          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PPR98_ARATH (Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 42/152 (27.63%), Postives = 72/152 (47.37%), Query Frame = 3
Query:  279 LIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFF-DNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGML-----RECVP 716
            L+   E    E +  I+  V+ +  +    +DA+  F  M   GI+P ++    L+  LC       A +   D  + +  P V T++ L+      G+L EA KLFDEM++R    +I+ +NSL+   C    +DEA  +      ++C+P
Sbjct:  227 LLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLP 378          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PPR76_ARATH (Pentatricopeptide repeat-containing protein At1g51965, mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 39/125 (31.20%), Postives = 67/125 (53.60%), Query Frame = 3
Query:  336 VLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEF-TPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRE 707
            +L +   A    +AI   +++ E G+       + +  AL K K +   H  F+  K +  +P + TY+IL+   G VGE+ EA  +F+E+    C  DI+++NSL+  + K G++DEAH   +E
Sbjct:  413 MLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKE 537          

HSP 2 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 46/160 (28.75%), Postives = 78/160 (48.75%), Query Frame = 3
Query:  219 YHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFW--IVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHE-FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEA 689
            Y+ +   LG  KQ + + D   +++++     +P+IF   I++ ++ R    ++AI  F  +     KP I   + L++ L K   V  AH  F   + +   P V TYS L+   G    +  A  LF+EML + C  +I+ +N LL+ + K G   EA
Sbjct:  445 YNTVFSALGKLKQISHIHDLFEKMKKDGP---SPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEA 601          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP238_ARATH (Putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 39/129 (30.23%), Postives = 68/129 (52.71%), Query Frame = 3
Query:  306 FEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDN-AKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEA 689
            FE +   F  +L  Y   N   DAI  F++++  G KP++     L+  LCK +H+  A + F+    +   P V TY+ LV GL ++G   +A  L  +M++R+   +++   +L++A  K G + EA
Sbjct:  149 FEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEA 277          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PPR99_ARATH (Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 44/152 (28.95%), Postives = 70/152 (46.05%), Query Frame = 3
Query:  279 LIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFF-DNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGML-----RECVP 716
            L++  E    E    I+  ++ A       NDA+  F  M   GI+P++   + L+  LC       A +   D  + +  P V T+S L+      G+L EA KL+DEM++R    DI  ++SL+   C    +DEA  M      ++C P
Sbjct:  243 LLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 394          

HSP 2 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 42/164 (25.61%), Postives = 78/164 (47.56%), Query Frame = 3
Query:  219 YHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNA-KHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRE 707
            Y+ ++D L + K      +   E+ +N+    N   +  ++R        +DA R  + M+E  I P++     L+ A  K   +  A + +D   K    P + TYS L+ G      L EA+ +F+ M+ + C  +++ +N+L++  CKA  +DE   + RE
Sbjct:  259 YNTIIDALCNYKNVNDALNLFTEM-DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFRE 421          
The following BLAST results are available for this feature:
BLAST of FC930785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
PP288_ARATH1.262e-1226.21Pentatricopeptide repeat-containing protein At3g60... [more]
PP190_ARATH1.262e-1222.32Pentatricopeptide repeat-containing protein At2g37... [more]
PPR96_ARATH1.648e-1228.95Pentatricopeptide repeat-containing protein At1g62... [more]
PP389_ARATH2.811e-1227.32Pentatricopeptide repeat-containing protein At5g16... [more]
PP236_ARATH2.811e-1232.54Pentatricopeptide repeat-containing protein At3g16... [more]
PP102_ARATH2.811e-1226.11Pentatricopeptide repeat-containing protein At1g63... [more]
PPR98_ARATH3.671e-1227.63Pentatricopeptide repeat-containing protein At1g63... [more]
PPR76_ARATH4.794e-1231.20Pentatricopeptide repeat-containing protein At1g51... [more]
PP238_ARATH4.794e-1230.23Putative pentatricopeptide repeat-containing prote... [more]
PPR99_ARATH6.262e-1228.95Pentatricopeptide repeat-containing protein At1g63... [more]

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Properties
Property NameValue
Genbank descriptionC34109A06EF PostHarvP1 Citrus clementina cDNA clone C34109A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930785 ID=FC930785; Name=FC930785; organism=Citrus clementina; type=EST; length=733bp
GACCATCAGCAGACCTTGTTAGCGAAATTTCCCGCGTTTTAAGCGACCAC
AGGGACCCCCACCACGACTTGGAACTTTCCCTCAATACATTCACTCCAAG
AATATCCACAAACTTAGTTGAACAAGTCTTAAAAAGGTGCAAGAATCTTG
GGTTCTCCGCTCACAGATTCTTTCTTTGGGCCAAAAGAATCCCTGGTTTT
GAACACAGTGCTGGTAGCTATCACATTTTGGTGGATATATTAGGAAGTAC
CAAGCAGTTTGCTTTATTATGGGATTTTTTGATAGAGATTAGGGAGAATC
AGTCTTTTGAAATAAACCCAGAAATTTTTTGGATTGTTCTTAGAGCTTAT
GCTAGAGCTAACTTACCTAATGATGCCATTAGGGCTTTTAATAGAATGGT
AGAGTTTGGTATTAAGCCTAGCATTTATGATCTTGATCAGCTGTTGCATG
CTTTGTGCAAAAGAAAGCATGTGAAGGTTGCCCATCAATTTTTTGACAAT
GCTAAGCATGAATTTACTCCAACTGTGAAAACCTATAGCATTTTGGTGAG
GGGGCTGGGTGATGTTGGTGAGTTGAGTGAAGCGCGTAAGTTGTTCGATG
AAATGCTTGAGAGAAAATGTCCGGTTGATATTCTTGCGCATAATAGTCTA
TTGGAAGCTATGTGCAAAGCGGGTAATATTGATGAAGCGCATGGAATGCT
TAGAGAATGCGTTCCATTGGAGCTGAGCAGATG
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