FC930785
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PPR81_ARATH (Pentatricopeptide repeat-containing protein At1g55630 OS=Arabidopsis thaliana GN=At1g55630 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12 Identity = 48/175 (27.43%), Postives = 82/175 (46.86%), Query Frame = 3 Query: 195 GFEHSAGSYHILVDI---LGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNA-KHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRE 707 GF +Y+I++ LG T + L D +++ F + + I+L A N P A+ N M E G++P + L+ L + ++ F D K TP V Y++++ G GEL +A ++F EM E+ ++ +NS++ C AG EA +L+E Sbjct: 252 GFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVK----DGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKE 422 HSP 2 Score: 67.3958 bits (163), Expect = 9.042e-11 Identity = 55/223 (24.66%), Postives = 99/223 (44.39%), Query Frame = 3 Query: 30 SRVLSDHRD--PHHDLELSLNTFTPRISTNLVEQVL------------KRCKNLGFSAHRFFLWAKRIPGFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHE-FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLL 653 SRVL + P + + +L+ IS LV +VL RC L A++FF+W F H+A YH+L+ I ++ + + E+ ++ + F +++ A L D + F + F +P + + +LH+L K K+ ++ + FTP V TY+I++ +G+ +L DEM++ D+ +N LL Sbjct: 81 SRVLDTLQQDCPGFNTKSALDELNVSISGLLVREVLVGILRTLSFDNKTRCAKL---AYKFFVWCGGQENFRHTANCYHLLMKIFAECGEYKAMCRLIDEMIKD-GYPTTACTFNLLICTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILL 299
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP281_ARATH (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12 Identity = 48/183 (26.23%), Postives = 87/183 (47.54%), Query Frame = 3 Query: 195 GFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPE--IFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHE--FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGML-----RECVP 716 G + ++++L+ L Q L ++ + + S+ + P+ F V++ Y + A+R +MVEFG S ++ ++H CK V+ A F ++ F P T++ LV GL G + A ++ D ML+ D+ +NS++ +CK G + EA +L R+C P Sbjct: 184 GIKPDVSTFNVLIKALCRAHQ---LRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSP 363 HSP 2 Score: 71.2478 bits (173), Expect = 6.262e-12 Identity = 37/126 (29.37%), Postives = 67/126 (53.17%), Query Frame = 3 Query: 333 IVLRAYARANLPNDAIRAFNRMV-EFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHE-FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLR 704 +++ + + DA+ M + G P Y + L++ LCK HVK A + D E + P V TY+ ++ GL +GE+ EA ++ D+M+ R C + + +N+L+ +CK ++EA + R Sbjct: 264 VIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELAR 389
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP178_ARATH (Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.178e-12 Identity = 42/129 (32.56%), Postives = 69/129 (53.49%), Query Frame = 3 Query: 327 FWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKR-KHVKVAHQFFDNAKHE-FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRE 707 F ++ AY R+ L +AI FN M E+G++P++ + ++ A K K +FFD + P T++ L+ G AR LFDEM R+ D+ ++N+LL+A+CK G +D A +L + Sbjct: 271 FSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQ 399
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PPR94_ARATH (Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11 Identity = 42/152 (27.63%), Postives = 70/152 (46.05%), Query Frame = 3 Query: 279 LIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFF-DNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGML-----RECVP 716 L++ E E + I+ ++ + +DA+ F M GI+P ++ L+ LC A + D + + P V T+S L+ G+L EA KL+DEM++R DI ++SL+ C +DEA M ++C P Sbjct: 245 LLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 396
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PPR36_ARATH (Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11 Identity = 36/138 (26.09%), Postives = 71/138 (51.45%), Query Frame = 3 Query: 279 LIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDN-AKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEA 689 ++++ ++ + N F I++ Y +AN +D + F +M G+ + L+ C+ + VA + F + P + TY IL+ GL D GE +A ++F+++ + K +DI +N ++ MC A +D+A Sbjct: 390 MVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDA 527
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP269_ARATH (Pentatricopeptide repeat-containing protein At3g48250, chloroplastic OS=Arabidopsis thaliana GN=At3g48250 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11 Identity = 56/235 (23.83%), Postives = 106/235 (45.11%), Query Frame = 3 Query: 15 LVSEISRVLSDHRDPHHDLELSLNTFTPRISTNLVEQVLKRCKNLGFSAHRFFLWAK---RIPGFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTP---TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGML 701 + E+S V++ D ++E L +S N V +VLK + A FF W G++HS +Y+ + +L A W + E++ ++++ + + V R + ++ + + ++ + M++ KPSI D LL L + + F + K+E T + Y + R L VG EA ++ M D + ++ L+ +CKA ++EA G+L Sbjct: 196 VAGEVSAVVTKG-DWSCEVERELQEMKLVLSDNFVIRVLKELREHPLKALAFFHWVGGGGSSSGYQHSTVTYNAALRVLARPNSVAEFWSVVDEMK-TAGYDMDLDTYIKVSRQFQKSRMMAETVKLYEYMMDGPFKPSIQDCSLLLRYLSGSPNPDLDLVFRVSRKYESTGKSLSKAVYDGIHRSLTSVGRFDEAEEITKAMRNAGYEPDNITYSQLVFGLCKAKRLEEARGVL 428
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PPR93_ARATH (Pentatricopeptide repeat-containing protein At1g62720 OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11 Identity = 42/152 (27.63%), Postives = 70/152 (46.05%), Query Frame = 3 Query: 279 LIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALC-KRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGML-----RECVP 716 L+ E F + I+ ++ + L NDA+ F+RM G++ + L+ LC + A D + P V T++ ++ G+ SEA KL++EM R D+ +NSL+ +C G +DEA ML + C+P Sbjct: 161 LVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLP 312
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP173_ARATH (Pentatricopeptide repeat-containing protein At2g27800, mitochondrial OS=Arabidopsis thaliana GN=At2g27800 PE=2 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11 Identity = 41/134 (30.60%), Postives = 72/134 (53.73%), Query Frame = 3 Query: 312 INPEIFWI--VLRAYARANLPNDAIRAFNRM-VEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHE-FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGML 701 I P++F + +++ Y + NDA+R F++M V + +P+ + D L+H LC + A + K + F P K+Y+ LV GE+ +A K EM+E VD +++ +L++ C+ G DEA +L Sbjct: 284 IEPDVFALNCLVKGYVLSLHVNDALRIFHQMSVVYDCEPNSFTYDYLIHGLCAQGRTINARELLSEMKGKGFVPNGKSYNSLVNAFALSGEIDDAVKCLWEMIENGRVVDFISYRTLVDESCRKGKYDEATRLL 417
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP218_ARATH (Pentatricopeptide repeat-containing protein At3g07290, mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11 Identity = 52/195 (26.67%), Postives = 95/195 (48.72%), Query Frame = 3 Query: 144 NLGFSAHRFFLWAKRIPGFEHSAGSYHILVDIL---GSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMV-EFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHE-FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRECV 713 +LGF A+ + GF Y +V+ L G T+ + +++I F ++ I +L + R DA++ F+ M E P+ L+H LC+ ++ A D + P+ +TY++L++ L D G + +A LFDEM+ R C ++ + L++ +C+ G I+EA+G+ R+ V Sbjct: 174 DLGFLAYVTYR-RMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKILKI----GFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMV 363
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP426_ARATH (Pentatricopeptide repeat-containing protein At5g50280, chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11 Identity = 57/179 (31.84%), Postives = 87/179 (48.60%), Query Frame = 3 Query: 186 RIPGFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPND-AIRAFNRMVEFGIKPSIYDLDQLLHALCKRK-HVKVAHQFFDNAKHEFTPTVKTYSILV---RGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRE 707 R G + SA +Y+IL+D Q ++ L E+ E+ E N + + ++ AY R +D A AF RM + G+KPS + L+HA H K F + K P+V+TY+ ++ R GD G+L E KL ML K + +N+LL+ K G EA ++ E Sbjct: 406 RDKGLKPSAATYNILMDAYARRMQPDIVETLLREM-EDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKL---MLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSE 580 The following BLAST results are available for this feature:
BLAST of FC930785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 73
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930785 ID=FC930785; Name=FC930785; organism=Citrus clementina; type=EST; length=733bpback to top |