FC930785

Overview
NameFC930785
Unique NameFC930785
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PPR81_ARATH (Pentatricopeptide repeat-containing protein At1g55630 OS=Arabidopsis thaliana GN=At1g55630 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 48/175 (27.43%), Postives = 82/175 (46.86%), Query Frame = 3
Query:  195 GFEHSAGSYHILVDI---LGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNA-KHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRE 707
            GF     +Y+I++     LG T +   L D +++      F  +   + I+L   A  N P  A+   N M E G++P +     L+  L +   ++    F D   K   TP V  Y++++ G    GEL +A ++F EM E+    ++  +NS++   C AG   EA  +L+E
Sbjct:  252 GFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVK----DGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKE 422          

HSP 2 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 55/223 (24.66%), Postives = 99/223 (44.39%), Query Frame = 3
Query:   30 SRVLSDHRD--PHHDLELSLNTFTPRISTNLVEQVL------------KRCKNLGFSAHRFFLWAKRIPGFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHE-FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLL 653
            SRVL   +   P  + + +L+     IS  LV +VL             RC  L   A++FF+W      F H+A  YH+L+ I     ++  +   + E+ ++  +      F +++     A L  D +  F +   F  +P  +  + +LH+L   K  K+    ++    + FTP V TY+I++     +G+     +L DEM++     D+  +N LL
Sbjct:   81 SRVLDTLQQDCPGFNTKSALDELNVSISGLLVREVLVGILRTLSFDNKTRCAKL---AYKFFVWCGGQENFRHTANCYHLLMKIFAECGEYKAMCRLIDEMIKD-GYPTTACTFNLLICTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILL 299          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP281_ARATH (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 48/183 (26.23%), Postives = 87/183 (47.54%), Query Frame = 3
Query:  195 GFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPE--IFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHE--FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGML-----RECVP 716
            G +    ++++L+  L    Q   L   ++ + +  S+ + P+   F  V++ Y      + A+R   +MVEFG   S   ++ ++H  CK   V+ A  F     ++  F P   T++ LV GL   G +  A ++ D ML+     D+  +NS++  +CK G + EA  +L     R+C P
Sbjct:  184 GIKPDVSTFNVLIKALCRAHQ---LRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSP 363          

HSP 2 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 37/126 (29.37%), Postives = 67/126 (53.17%), Query Frame = 3
Query:  333 IVLRAYARANLPNDAIRAFNRMV-EFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHE-FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLR 704
            +++  + +     DA+     M  + G  P  Y  + L++ LCK  HVK A +  D    E + P V TY+ ++ GL  +GE+ EA ++ D+M+ R C  + + +N+L+  +CK   ++EA  + R
Sbjct:  264 VIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELAR 389          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP178_ARATH (Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 42/129 (32.56%), Postives = 69/129 (53.49%), Query Frame = 3
Query:  327 FWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKR-KHVKVAHQFFDNAKHE-FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRE 707
            F  ++ AY R+ L  +AI  FN M E+G++P++   + ++ A  K     K   +FFD  +     P   T++ L+      G    AR LFDEM  R+   D+ ++N+LL+A+CK G +D A  +L +
Sbjct:  271 FSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQ 399          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PPR94_ARATH (Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 42/152 (27.63%), Postives = 70/152 (46.05%), Query Frame = 3
Query:  279 LIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFF-DNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGML-----RECVP 716
            L++  E    E +  I+  ++    +    +DA+  F  M   GI+P ++    L+  LC       A +   D  + +  P V T+S L+      G+L EA KL+DEM++R    DI  ++SL+   C    +DEA  M      ++C P
Sbjct:  245 LLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 396          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PPR36_ARATH (Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 36/138 (26.09%), Postives = 71/138 (51.45%), Query Frame = 3
Query:  279 LIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDN-AKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEA 689
            ++++  ++  + N   F I++  Y +AN  +D +  F +M   G+       + L+   C+   + VA + F      +  P + TY IL+ GL D GE  +A ++F+++ + K  +DI  +N ++  MC A  +D+A
Sbjct:  390 MVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDA 527          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP269_ARATH (Pentatricopeptide repeat-containing protein At3g48250, chloroplastic OS=Arabidopsis thaliana GN=At3g48250 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 56/235 (23.83%), Postives = 106/235 (45.11%), Query Frame = 3
Query:   15 LVSEISRVLSDHRDPHHDLELSLNTFTPRISTNLVEQVLKRCKNLGFSAHRFFLWAK---RIPGFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTP---TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGML 701
            +  E+S V++   D   ++E  L      +S N V +VLK  +     A  FF W        G++HS  +Y+  + +L      A  W  + E++    ++++ + +  V R + ++ +  + ++ +  M++   KPSI D   LL  L    +  +   F  + K+E T    +   Y  + R L  VG   EA ++   M       D + ++ L+  +CKA  ++EA G+L
Sbjct:  196 VAGEVSAVVTKG-DWSCEVERELQEMKLVLSDNFVIRVLKELREHPLKALAFFHWVGGGGSSSGYQHSTVTYNAALRVLARPNSVAEFWSVVDEMK-TAGYDMDLDTYIKVSRQFQKSRMMAETVKLYEYMMDGPFKPSIQDCSLLLRYLSGSPNPDLDLVFRVSRKYESTGKSLSKAVYDGIHRSLTSVGRFDEAEEITKAMRNAGYEPDNITYSQLVFGLCKAKRLEEARGVL 428          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PPR93_ARATH (Pentatricopeptide repeat-containing protein At1g62720 OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 42/152 (27.63%), Postives = 70/152 (46.05%), Query Frame = 3
Query:  279 LIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALC-KRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGML-----RECVP 716
            L+   E   F  +  I+  ++    +  L NDA+  F+RM   G++      + L+  LC   +    A    D    +  P V T++ ++      G+ SEA KL++EM  R    D+  +NSL+  +C  G +DEA  ML     + C+P
Sbjct:  161 LVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLP 312          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP173_ARATH (Pentatricopeptide repeat-containing protein At2g27800, mitochondrial OS=Arabidopsis thaliana GN=At2g27800 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 41/134 (30.60%), Postives = 72/134 (53.73%), Query Frame = 3
Query:  312 INPEIFWI--VLRAYARANLPNDAIRAFNRM-VEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHE-FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGML 701
            I P++F +  +++ Y  +   NDA+R F++M V +  +P+ +  D L+H LC +     A +     K + F P  K+Y+ LV      GE+ +A K   EM+E    VD +++ +L++  C+ G  DEA  +L
Sbjct:  284 IEPDVFALNCLVKGYVLSLHVNDALRIFHQMSVVYDCEPNSFTYDYLIHGLCAQGRTINARELLSEMKGKGFVPNGKSYNSLVNAFALSGEIDDAVKCLWEMIENGRVVDFISYRTLVDESCRKGKYDEATRLL 417          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP218_ARATH (Pentatricopeptide repeat-containing protein At3g07290, mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 52/195 (26.67%), Postives = 95/195 (48.72%), Query Frame = 3
Query:  144 NLGFSAHRFFLWAKRIPGFEHSAGSYHILVDIL---GSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMV-EFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHE-FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRECV 713
            +LGF A+  +       GF      Y  +V+ L   G T+   +    +++I     F ++  I   +L  + R     DA++ F+ M  E    P+      L+H LC+   ++ A    D    +   P+ +TY++L++ L D G + +A  LFDEM+ R C  ++  +  L++ +C+ G I+EA+G+ R+ V
Sbjct:  174 DLGFLAYVTYR-RMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKILKI----GFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMV 363          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP426_ARATH (Pentatricopeptide repeat-containing protein At5g50280, chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 57/179 (31.84%), Postives = 87/179 (48.60%), Query Frame = 3
Query:  186 RIPGFEHSAGSYHILVDILGSTKQFALLWDFLIEIRENQSFEINPEIFWIVLRAYARANLPND-AIRAFNRMVEFGIKPSIYDLDQLLHALCKRK-HVKVAHQFFDNAKHEFTPTVKTYSILV---RGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRE 707
            R  G + SA +Y+IL+D      Q  ++   L E+ E+   E N + +  ++ AY R    +D A  AF RM + G+KPS +    L+HA      H K    F +  K    P+V+TY+ ++   R  GD G+L E  KL   ML  K     + +N+LL+   K G   EA  ++ E
Sbjct:  406 RDKGLKPSAATYNILMDAYARRMQPDIVETLLREM-EDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKL---MLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSE 580          
The following BLAST results are available for this feature:
BLAST of FC930785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
PPR81_ARATH6.262e-1227.43Pentatricopeptide repeat-containing protein At1g55... [more]
PP281_ARATH6.262e-1226.23Pentatricopeptide repeat-containing protein At3g53... [more]
PP178_ARATH8.178e-1232.56Pentatricopeptide repeat-containing protein At2g31... [more]
PPR94_ARATH1.395e-1127.63Pentatricopeptide repeat-containing protein At1g62... [more]
PPR36_ARATH1.395e-1126.09Pentatricopeptide repeat-containing protein At1g12... [more]
PP269_ARATH1.395e-1123.83Pentatricopeptide repeat-containing protein At3g48... [more]
PPR93_ARATH1.822e-1127.63Pentatricopeptide repeat-containing protein At1g62... [more]
PP173_ARATH2.379e-1130.60Pentatricopeptide repeat-containing protein At2g27... [more]
PP218_ARATH3.108e-1126.67Pentatricopeptide repeat-containing protein At3g07... [more]
PP426_ARATH4.059e-1131.84Pentatricopeptide repeat-containing protein At5g50... [more]

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Properties
Property NameValue
Genbank descriptionC34109A06EF PostHarvP1 Citrus clementina cDNA clone C34109A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930785 ID=FC930785; Name=FC930785; organism=Citrus clementina; type=EST; length=733bp
GACCATCAGCAGACCTTGTTAGCGAAATTTCCCGCGTTTTAAGCGACCAC
AGGGACCCCCACCACGACTTGGAACTTTCCCTCAATACATTCACTCCAAG
AATATCCACAAACTTAGTTGAACAAGTCTTAAAAAGGTGCAAGAATCTTG
GGTTCTCCGCTCACAGATTCTTTCTTTGGGCCAAAAGAATCCCTGGTTTT
GAACACAGTGCTGGTAGCTATCACATTTTGGTGGATATATTAGGAAGTAC
CAAGCAGTTTGCTTTATTATGGGATTTTTTGATAGAGATTAGGGAGAATC
AGTCTTTTGAAATAAACCCAGAAATTTTTTGGATTGTTCTTAGAGCTTAT
GCTAGAGCTAACTTACCTAATGATGCCATTAGGGCTTTTAATAGAATGGT
AGAGTTTGGTATTAAGCCTAGCATTTATGATCTTGATCAGCTGTTGCATG
CTTTGTGCAAAAGAAAGCATGTGAAGGTTGCCCATCAATTTTTTGACAAT
GCTAAGCATGAATTTACTCCAACTGTGAAAACCTATAGCATTTTGGTGAG
GGGGCTGGGTGATGTTGGTGAGTTGAGTGAAGCGCGTAAGTTGTTCGATG
AAATGCTTGAGAGAAAATGTCCGGTTGATATTCTTGCGCATAATAGTCTA
TTGGAAGCTATGTGCAAAGCGGGTAATATTGATGAAGCGCATGGAATGCT
TAGAGAATGCGTTCCATTGGAGCTGAGCAGATG
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