FC930785

Overview
NameFC930785
Unique NameFC930785
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PPR37_ARATH (Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.301e-11
Identity = 36/126 (28.57%), Postives = 65/126 (51.59%), Query Frame = 3
Query:  315 NPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDN-AKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEA 689
            N   F I++  Y +ANL +D +  F +M   G+       + L+   C+   ++VA + F         P + +Y IL+ GL D GE  +A ++F+++ + K  +DI  +N ++  MC A  +D+A
Sbjct:  386 NIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDA 511          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP380_ARATH (Pentatricopeptide repeat-containing protein At5g14080 OS=Arabidopsis thaliana GN=At5g14080 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.923e-11
Identity = 38/144 (26.39%), Postives = 75/144 (52.08%), Query Frame = 3
Query:  285 EIRENQSFEINPEIFWIVLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTP-TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRECV 713
            E+  ++ +    + + +++    +A    ++  A   M + G+ P +   + L+ A CK + ++ A + +D    E     + TY++L+R L + GE  E+ +LFD+MLER    D   + SL+E +CK   I+ A  + R+C+
Sbjct:  386 ELLSSKGYFSELQSYSLMISFLCKAGRVRESYTALQEMKKEGLAPDVSLYNALIEACCKAEMIRPAKKLWDEMFVEGCKMNLTTYNVLIRKLSEEGEAEESLRLFDKMLERGIEPDETIYMSLIEGLCKETKIEAAMEVFRKCM 529          
BLAST of FC930785 vs. ExPASy Swiss-Prot
Match: PP213_ARATH (Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 40/132 (30.30%), Postives = 67/132 (50.76%), Query Frame = 3
Query:  318 PEIFWI--VLRAYARANLPNDAIRAFNRMVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHE-FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLR 704
            P++F    ++  + + N  +DA R  +RM      P     + ++ +LC R  + +A +  +    +   PTV TY+IL+      G + EA KL DEML R    D+  +N+++  MCK G +D A  M+R
Sbjct:  156 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVR 287          
The following BLAST results are available for this feature:
BLAST of FC930785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
PPR37_ARATH5.301e-1128.57Pentatricopeptide repeat-containing protein At1g12... [more]
PP380_ARATH6.923e-1126.39Pentatricopeptide repeat-containing protein At5g14... [more]
PP213_ARATH9.042e-1130.30Pentatricopeptide repeat-containing protein At3g04... [more]

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Properties
Property NameValue
Genbank descriptionC34109A06EF PostHarvP1 Citrus clementina cDNA clone C34109A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930785 ID=FC930785; Name=FC930785; organism=Citrus clementina; type=EST; length=733bp
GACCATCAGCAGACCTTGTTAGCGAAATTTCCCGCGTTTTAAGCGACCAC
AGGGACCCCCACCACGACTTGGAACTTTCCCTCAATACATTCACTCCAAG
AATATCCACAAACTTAGTTGAACAAGTCTTAAAAAGGTGCAAGAATCTTG
GGTTCTCCGCTCACAGATTCTTTCTTTGGGCCAAAAGAATCCCTGGTTTT
GAACACAGTGCTGGTAGCTATCACATTTTGGTGGATATATTAGGAAGTAC
CAAGCAGTTTGCTTTATTATGGGATTTTTTGATAGAGATTAGGGAGAATC
AGTCTTTTGAAATAAACCCAGAAATTTTTTGGATTGTTCTTAGAGCTTAT
GCTAGAGCTAACTTACCTAATGATGCCATTAGGGCTTTTAATAGAATGGT
AGAGTTTGGTATTAAGCCTAGCATTTATGATCTTGATCAGCTGTTGCATG
CTTTGTGCAAAAGAAAGCATGTGAAGGTTGCCCATCAATTTTTTGACAAT
GCTAAGCATGAATTTACTCCAACTGTGAAAACCTATAGCATTTTGGTGAG
GGGGCTGGGTGATGTTGGTGAGTTGAGTGAAGCGCGTAAGTTGTTCGATG
AAATGCTTGAGAGAAAATGTCCGGTTGATATTCTTGCGCATAATAGTCTA
TTGGAAGCTATGTGCAAAGCGGGTAATATTGATGAAGCGCATGGAATGCT
TAGAGAATGCGTTCCATTGGAGCTGAGCAGATG
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