FC930788
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RK2_CYCTA (50S ribosomal protein L2, chloroplastic OS=Cycas taitungensis GN=rpl2 PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20 Identity = 68/216 (31.48%), Postives = 107/216 (49.54%), Query Frame = 2 Query: 65 SPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 +P K++ KG S HR G + +R +DF Y+ G + I +DP R A + V + +K+ + G+ G + G +A + +GN LP+ +P G + ++E +G G LARA+G A +I+ + +T ++LPSG ++I C A IGQV L KAG+ ++ KR P+VRGV MNPV+H Sbjct: 28 NPQKKLTSGQHRCGKGRNSRGIITARHRGGGHKRLYRQIDFQRNEKYIFGEIVTIEYDPNRSAYICLVHYGDG-----EKKYILHPRGVIIGDTITSGPRAPISIGNALPLTDVPLGTAIHSIEITLGKGGQLARAAGAVAELIA--KEGRSTTLRLPSGEIRLISENCSATIGQVGNVNANNGTLGKAGS--KRWLGKR---PRVRGVVMNPVDH 231
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_DESAA (50S ribosomal protein L2 OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rplB PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20 Identity = 72/215 (33.49%), Postives = 107/215 (49.77%), Query Frame = 2 Query: 68 PSKEMGRVIRAQRKGAGSVFKSHTHHRKGPA--QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 P K + +V++ + G + + HR G + Q R +DF + VA I +DP RGA LA + + +K IA + G V G +A + GN LP+ +IP G + N+E VG G + R +G +A +++ + +V+LPSG +++ C A IGQV G E L G A K + R P VRGVAMNPV+H Sbjct: 29 PEKSLIKVVK-KSGGRNANGRVTCRHRGGGSRRQLRIVDFKRNKTGIPAKVAAIEYDPNRGARLALLHYVDG-----EKRYIIAPVNLTVGDMVESGPEADIKPGNALPLNNIPLGTQIHNIELKVGKGGQVVRGAGTFAQLVA--KEGKYAQVRLPSGEVRLVLLKCMATIGQV---GNVEHENLALGKAGRKRWLGRR--PSVRGVAMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RK2_PINTH (50S ribosomal protein L2, chloroplastic OS=Pinus thunbergii GN=rpl2 PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20 Identity = 67/203 (33.00%), Postives = 103/203 (50.74%), Query Frame = 2 Query: 104 RKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 R G G + HR G + +R +DF ++ G + I +DP R A + +V +++ K + G+ G + G KA + +GN LP+ ++P G + N+E +G G LARA+G A +I+ + T R LPSG ++I C A IGQV + KAG ++ KR+ +VRGVAMNPV+H Sbjct: 44 RNGRGIIT---ARHRGGGHKRLYRQIDFRRNKEHISGEIVTIEYDPNRSAYICKVHYKNG-----DKMYILHPRGVMIGDTILSGPKAPISIGNALPLTNMPLGTAIHNIEITLGKGGQLARAAGAVAELIAKEDRSATLR--LPSGEVRLISENCSATIGQVGNITANNRSFGKAG--AKRWLGKRS---EVRGVAMNPVDH 231
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RK2_MORIN (50S ribosomal protein L2, chloroplastic OS=Morus indica GN=rpl2-A PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20 Identity = 62/194 (31.96%), Postives = 95/194 (48.97%), Query Frame = 2 Query: 143 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706 HR G + +R +DF + G + I +DP R A + + + +K + G G + G + + +GN LP+ +P G + N+E +G G LARA+G A +I+ + + +KLPSG ++IP C A +GQV G +K L +AG+ CW P VRGV MNPV+H Sbjct: 51 HRGGGHKRLYRKIDFRRNEKDIYGKIVTIEYDPNRNAYICLIHYGGG-----EKRYILHPRGALIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLIPKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDH 228
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RK2_CHAVU (50S ribosomal protein L2, chloroplastic OS=Chara vulgaris GN=rpl2 PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20 Identity = 68/219 (31.05%), Postives = 109/219 (49.77%), Query Frame = 2 Query: 62 LSPSKEM--GRVIRAQRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 L P K + G++ + R G + + HR G + +R +DF + + G+V I +DP R + + V + +K + G+ G + A++ VGN LP+ IP G + N+E G G L RA+G A +++ + T ++LPSG ++I C A IGQV + + KAG+ +++ KR PKVRG AMNPV+H Sbjct: 27 LKPEKSLTSGKMSKKGRNNQGIIT---SRHRGGGHKRLYRKIDFRRKKIGIYGIVKTIEYDPNRNSHICLVNYEDG-----EKRYILYPRGIKIGDTILSSMDASIFVGNTLPLTQIPLGTAIHNIELQPGKGGQLVRAAGTVAQVVA--KEGKWTSIRLPSGEVRLIYQKCLATIGQVGNPEFNNQSIGKAGS--KRWQGKR---PKVRGTAMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_SALTY (50S ribosomal protein L2 OS=Salmonella typhimurium GN=rplB PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.749e-20 Identity = 61/181 (33.70%), Postives = 92/181 (50.83%), Query Frame = 2 Query: 164 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 +R +DF + VV + +DP R A +A V ++ ++ +A +G+ G + G A + GN LP+R+IP G+ V NVE G G LAR++G Y I++ D ++L SG + + + CRA +G+V + L KAG A R P VRG AMNPV+H Sbjct: 62 YRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_SALTI (50S ribosomal protein L2 OS=Salmonella typhi GN=rplB PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.749e-20 Identity = 61/181 (33.70%), Postives = 92/181 (50.83%), Query Frame = 2 Query: 164 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 +R +DF + VV + +DP R A +A V ++ ++ +A +G+ G + G A + GN LP+R+IP G+ V NVE G G LAR++G Y I++ D ++L SG + + + CRA +G+V + L KAG A R P VRG AMNPV+H Sbjct: 62 YRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_SALSV (50S ribosomal protein L2 OS=Salmonella schwarzengrund (strain CVM19633) GN=rplB PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.749e-20 Identity = 61/181 (33.70%), Postives = 92/181 (50.83%), Query Frame = 2 Query: 164 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 +R +DF + VV + +DP R A +A V ++ ++ +A +G+ G + G A + GN LP+R+IP G+ V NVE G G LAR++G Y I++ D ++L SG + + + CRA +G+V + L KAG A R P VRG AMNPV+H Sbjct: 62 YRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_SALPK (50S ribosomal protein L2 OS=Salmonella paratyphi A (strain AKU_12601) GN=rplB PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.749e-20 Identity = 61/181 (33.70%), Postives = 92/181 (50.83%), Query Frame = 2 Query: 164 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 +R +DF + VV + +DP R A +A V ++ ++ +A +G+ G + G A + GN LP+R+IP G+ V NVE G G LAR++G Y I++ D ++L SG + + + CRA +G+V + L KAG A R P VRG AMNPV+H Sbjct: 62 YRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_SALPB (50S ribosomal protein L2 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rplB PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.749e-20 Identity = 61/181 (33.70%), Postives = 92/181 (50.83%), Query Frame = 2 Query: 164 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 +R +DF + VV + +DP R A +A V ++ ++ +A +G+ G + G A + GN LP+R+IP G+ V NVE G G LAR++G Y I++ D ++L SG + + + CRA +G+V + L KAG A R P VRG AMNPV+H Sbjct: 62 YRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDH 230 The following BLAST results are available for this feature:
BLAST of FC930788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930788 ID=FC930788; Name=FC930788; organism=Citrus clementina; type=EST; length=708bpback to top |