FC930788
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_AERPE (50S ribosomal protein L2P OS=Aeropyrum pernix GN=rpl2p PE=3 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 2.475e-42 Identity = 98/210 (46.67%), Postives = 125/210 (59.52%), Query Frame = 2 Query: 80 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 MG+ +R QR G G+ ++S H GPA++ L L+G V E+IHDPGR PLARV + L AAEGMY GQ + G A GN+LP+ IPEG V NVE GD G LAR +G YA+++ T ++LPSG K +P+ RA IG AG GR EKP++KAG AYHK++VK WP+VRGVAMN V+H Sbjct: 1 MGKRLRQQRAGRGTPTYRSRAHIHPGPAKYPPLS----GDTLRGKVVELIHDPGRYVPLARVVREDGVEF-----LMPAAEGMYVGQIIEIGPAAKPEAGNILPLGKIPEGTEVFNVELRPGDGGKLARQAGSYALVVGRA--GAKTILRLPSGKDKEVPNDSRATIGIPAGAGRIEKPIMKAGFAYHKWKVKARKWPRVRGVAMNAVDH 199
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_HALMA (50S ribosomal protein L2P OS=Haloarcula marismortui GN=rpl2p PE=1 SV=4) HSP 1 Score: 170.244 bits (430), Expect = 9.407e-42 Identity = 96/210 (45.71%), Postives = 124/210 (59.05%), Query Frame = 2 Query: 80 MGRVIRAQRKGAG-SVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 MGR I+ QR+G G S F++ +H K + R ++ G+ + G V +I HDP R AP+A V F R L +A EG+ G + G A + GN LP+ IPEG VCNVE GD G ARASG A +++H D + VKLPSG K + CRA IG VAGGGRT+KP +KAGN +HK + + WP VRGVAMN V+H Sbjct: 1 MGRRIQGQRRGRGTSTFRAPSHRYKADLEHRKVEDGD---VIAGTVVDIEHDPARSAPVAAVEFEDGDR-----RLILAPEGVGVGDELQVGVSAEIAPGNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTH--DRNVAVVKLPSGEMKRLDPQCRATIGVVAGGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDH 200
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_METKA (50S ribosomal protein L2P OS=Methanopyrus kandleri GN=rpl2p PE=3 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 1.229e-41 Identity = 92/210 (43.81%), Postives = 121/210 (57.62%), Query Frame = 2 Query: 80 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 MG+ IR QR G G +++ +H +G + R D E+ G + G V E++HDP R AP+ARV F ++ L + EG G + CG A + GN LP+ IPEG + N+E GD G ARA G YA II+H D T V+LPSG + CRA IG ++GGG+ EKP +KAG Y+ R K WPKVRGVAMN V+H Sbjct: 1 MGKRIRPQRLGRGGPTYRAPSHRYRGRIEHRPYDEQEKKGKVVGKVVELLHDPARNAPVARVRFEDG-----EERLILVPEGTKVGDIIECGVSAEIKPGNTLPLAEIPEGVPIFNIEGQPGDGGKFARAPGCYATIIAH--DVGRTYVQLPSGKVRTFDPRCRATIGVMSGGGKREKPFVKAGKKYYHMRSKGGKWPKVRGVAMNAVDH 203
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_THEGJ (50S ribosomal protein L2P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl2p PE=3 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 1.605e-41 Identity = 93/210 (44.29%), Postives = 127/210 (60.48%), Query Frame = 2 Query: 80 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 MG+ + QR+G G+ F++ +H +G ++ L+ + L+GVV EI+HDPGR AP+ARV F K+L +A EG+ GQ +Y G +A + +GN LP+ IPEG V N+E GD G RA G YA+++S + D V+LPSG K CRA IG VAGGGR EKP++KAG AY+ + + WPK RGV MN V H Sbjct: 1 MGKSLIQQRRGKGTTTFRAPSHRYRGAVKYVPLNIVKEKT-LRGVVEEILHDPGRTAPVARVKFEDG-----TKKLILAPEGVLVGQEIYIGPEAPIAIGNTLPLAKIPEGTYVYNIEGVPGDGGKYVRAGGTYALVVSR--ERDKVIVQLPSGELKQFKPECRATIGVVAGGGRLEKPIVKAGKAYYIAKARNRFWPKPRGVKMNAVNH 202
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_KORCO (50S ribosomal protein L2P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl2p PE=3 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 1.605e-41 Identity = 91/210 (43.33%), Postives = 128/210 (60.95%), Query Frame = 2 Query: 80 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 MG+ I QR+G G + F+S H + PA++ + ++GV+ EI+H+PGR P++ V + Q+ +I EG+Y GQ + GK A + GNVLP+ IP+G++VCNVE GD G +AR SG YA++ SH + D ++LPS +K++ + CRA IG VAG GR EKP +KAG Y+ R WP VRGVAMNPV H Sbjct: 1 MGKRILVQRRGRGGIQFRSKDHLKIAPARYPQ---DGMDNLMRGVIKEILHEPGRHTPISLVELENG-----QEFYYIPPEGVYEGQEIQIGKGAEVKTGNVLPLSEIPDGSLVCNVEIRPGDGGKIARRSGTYAIVFSH--EGDKVILRLPSRKEKLVDARCRATIGVVAGSGRIEKPFMKAGIKYYHERTHPKRWPVVRGVAMNPVSH 200
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_HALWD (50S ribosomal protein L2P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl2p PE=3 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 1.605e-41 Identity = 94/210 (44.76%), Postives = 124/210 (59.05%), Query Frame = 2 Query: 80 MGRVIRAQRKGAG-SVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 MGR I+ QR+G G S F++ +H K + E + + G + +I HDP R AP+A V F R L +A EG+ G+ + G A + GN LP+R IPEG VCNVE VGD G ARASG A +++H D D ++LPSG K + C+A IG VAGGGRTEKP +KAG +HK + + WP+VRGVAMN V+H Sbjct: 1 MGRRIQGQRRGRGTSTFRAPSHRYKAELSHKQ---SESDDTITGTIVDIEHDPARSAPVAAVEFDDGDR-----RLVLAPEGIRVGETMQIGVSAEIKPGNTLPLREIPEGVPVCNVESQVGDGGKFARASGTSAQLMTH--DRDVVVIELPSGETKRLSPACQATIGVVAGGGRTEKPFVKAGKKHHKMKARGIKWPRVRGVAMNAVDH 200
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_PYRKO (50S ribosomal protein L2P OS=Pyrococcus kodakaraensis GN=rpl2p PE=3 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 2.737e-41 Identity = 93/210 (44.29%), Postives = 127/210 (60.48%), Query Frame = 2 Query: 80 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 MG+ + QR+G G+ F++ +H +G ++ L+ + L+GVV EI+HDPGR AP+ARV F K+L IA EG+ GQ +Y G +A + +GN LP+ IPEG V ++E GD G RA G YA+++S + D V+LPSG K CRA IG VAGGGR EKP++KAG AY+ + + WPK RGV MN V H Sbjct: 1 MGKSLIQQRRGKGTTTFRAPSHRYRGAVRYVPLNLVQERT-LRGVVEEILHDPGRTAPVARVKFEDG-----TKKLIIAPEGVLVGQEIYIGPEAPIAIGNTLPLAKIPEGTYVYDIEGVPGDGGKYVRAGGTYALVVSR--EKDKVIVQLPSGELKAFNPMCRATIGVVAGGGRLEKPIVKAGKAYYIAKARNRFWPKPRGVKMNAVNH 202
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_METST (50S ribosomal protein L2P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl2p PE=3 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 2.737e-41 Identity = 93/210 (44.29%), Postives = 127/210 (60.48%), Query Frame = 2 Query: 80 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 MG+ + QR+G G+ ++S +H +G +RS D ER G L G+V +IIHDPGR AP+A V F + +++L +A E + + CG A++ GN LP+ IPEG V N+E++ GD G R+SG YA +I+H D D T +++PSG K RA +G VAGGGR EKP LKAGN YH + K VRGVAMN V+H Sbjct: 1 MGKRLIIQRRGRGTPTYRSSSHRFRGKVAYRSYDKLEREGSLTGIVIDIIHDPGRSAPVAVVKFDNG-----EEKLVLAPESIAIDDEIECGVSASIEPGNTLPLSEIPEGTPVFNIENNPGDGGKFVRSSGTYASLITH--DVDKTMIEMPSGELKAFNPRSRATVGVVAGGGRKEKPFLKAGNRYHALKAKGKKMMTVRGVAMNAVDH 203
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL8_ENTHI (60S ribosomal protein L8 (Fragment) OS=Entamoeba histolytica GN=RPL8 PE=2 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 3.574e-41 Identity = 76/114 (66.67%), Postives = 94/114 (82.46%), Query Frame = 2 Query: 203 KGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAK 544 +G+V I HDPGRGAPLARV FR+P +Y KELFI AEG+Y+GQ++YCG KA+L +GNVLP+ PEG VVCNVE GDRG++ARASG+YA +ISHN DN+TTR++LPSGAK Sbjct: 33 RGLVKSIEHDPGRGAPLARVVFRNPRQYGLDKELFICAEGLYSGQYIYCGSKASLHIGNVLPIGQCPEGTVVCNVESKPGDRGIIARASGNYATVISHNADNETTRIRLPSGAK 146
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_METTP (50S ribosomal protein L2P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl2p PE=3 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 4.668e-41 Identity = 91/210 (43.33%), Postives = 130/210 (61.90%), Query Frame = 2 Query: 80 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 MG+ I +Q +G G+ +++ +H + A + + F ++G+V +I+HDP R AP+A V + +K+ +A EG Y GQ + CG A + GN LP+ SIPEG +CN+E G G ARASG Y ++++H D T V+LPSG K + C A IG VAGGGRTEKPL+KAG +++K+R K WP+VRGVAMN V+H Sbjct: 1 MGKRIISQNRGKGTPTYRAPSHRYR--ADIKHIKFS--GDLVRGIVEDIMHDPARTAPVALVRLENG-----EKQYVLATEGTYIGQEIACGPAAEIQPGNTLPLASIPEGMPICNIESKPGHGGQFARASGVYGILVAH--DVGATVVQLPSGEMKWLNPNCLATIGVVAGGGRTEKPLVKAGKSFYKYRSKAVKWPRVRGVAMNAVDH 199 The following BLAST results are available for this feature:
BLAST of FC930788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930788 ID=FC930788; Name=FC930788; organism=Citrus clementina; type=EST; length=708bpback to top |