FC930788

Overview
NameFC930788
Unique NameFC930788
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_SHEB9 (50S ribosomal protein L2 OS=Shewanella baltica (strain OS195) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 58/181 (32.04%), Postives = 90/181 (49.72%), Query Frame = 2
Query:  164 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            +R +DF      +   +  + +DP R A +A V +        ++   +AA+GM  G  +  G  A +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +++   D     ++L SG  + +P  CRA  G+V       + L KAG      +  R   P VRGVAMNPV+H
Sbjct:   62 YRLIDFKRDKDGIPAKIERLEYDPNRTANIALVLYADG-----ERRYILAAKGMQAGDKIQSGVAAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAG-----AKRWRGIRPTVRGVAMNPVDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_SHEB8 (50S ribosomal protein L2 OS=Shewanella baltica (strain OS185) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 58/181 (32.04%), Postives = 90/181 (49.72%), Query Frame = 2
Query:  164 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            +R +DF      +   +  + +DP R A +A V +        ++   +AA+GM  G  +  G  A +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +++   D     ++L SG  + +P  CRA  G+V       + L KAG      +  R   P VRGVAMNPV+H
Sbjct:   62 YRLIDFKRDKDGIPAKIERLEYDPNRTANIALVLYADG-----ERRYILAAKGMQAGDKIQSGVAAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAG-----AKRWRGIRPTVRGVAMNPVDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_SHEB5 (50S ribosomal protein L2 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 58/181 (32.04%), Postives = 90/181 (49.72%), Query Frame = 2
Query:  164 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            +R +DF      +   +  + +DP R A +A V +        ++   +AA+GM  G  +  G  A +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +++   D     ++L SG  + +P  CRA  G+V       + L KAG      +  R   P VRGVAMNPV+H
Sbjct:   62 YRLIDFKRDKDGIPAKIERLEYDPNRTANIALVLYADG-----ERRYILAAKGMQAGDKIQSGVAAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAG-----AKRWRGIRPTVRGVAMNPVDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_SHEB2 (50S ribosomal protein L2 OS=Shewanella baltica (strain OS223) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 58/181 (32.04%), Postives = 90/181 (49.72%), Query Frame = 2
Query:  164 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            +R +DF      +   +  + +DP R A +A V +        ++   +AA+GM  G  +  G  A +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +++   D     ++L SG  + +P  CRA  G+V       + L KAG      +  R   P VRGVAMNPV+H
Sbjct:   62 YRLIDFKRDKDGIPAKIERLEYDPNRTANIALVLYADG-----ERRYILAAKGMQAGDKIQSGVAAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAG-----AKRWRGIRPTVRGVAMNPVDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_RICPR (50S ribosomal protein L2 OS=Rickettsia prowazekii GN=rplB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 61/194 (31.44%), Postives = 98/194 (50.52%), Query Frame = 2
Query:  143 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706
            HR G  +  +R +DF  +   +  +V  I +DP R A +A + +        +    +A + +  G  V   + A + +GN LP++SIP G  + NVE  +G  G +AR++G    ++    D+   ++KL SG  +++P  C+A IG ++   +    L KAG         RN W    P VRGVAMNPV+H
Sbjct:   53 HRGGGHKKLYRVIDFKRKKIDISAIVERIEYDPNRTAFIALIKYDDG-----EYSYILAPQKLSIGDRVISSQAADIKIGNCLPLKSIPIGTTLHNVEMKIGKGGQIARSAGTSVELV--GKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAG---------RNRWLGWRPHVRGVAMNPVDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_PARL1 (50S ribosomal protein L2 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 60/198 (30.30%), Postives = 95/198 (47.98%), Query Frame = 2
Query:  125 FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706
            F+   H R     +R++DF  R   +   V  + +DP R A +A V +        +    +A + +  G  V  G +  +  GN +P+ +IP G +V NVE   G  G +AR++G Y  ++    D     ++L SG ++++P+ C A IG V+    +   + KAG         RN W    P VRGV MNPV+H
Sbjct:   53 FRGGGHKRS----YRTVDFKRRRYDVPATVERLEYDPNRTAFIALVKYEDG-----ELAYILAPQRLQPGDVVISGSRVDVKPGNAMPLANIPVGTIVHNVEMKPGKGGQIARSAGTYVQLVGR--DQGYALLRLSSGEQRMVPATCMASIGAVSNPDHSNITIAKAG---------RNRWLGKRPHVRGVVMNPVDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_NOSP7 (50S ribosomal protein L2 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 71/226 (31.42%), Postives = 105/226 (46.46%), Query Frame = 2
Query:   47 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706
            A+     P K +    + + KG  +  +  +  R G  +  +R +DF      +   VA I +DP R A +A + ++       +K   +   G+  G  +  G ++    GN LP+  IP G  V NVE   G  G + RA+G  A +++   + D   +KLPSG  ++I   C A IGQV   G T+   L AG A       RN W    PKVRG  MNPV+H
Sbjct:   22 AEITKTEPEKSL-TTSKHRAKGRNNTGRITSRRRGGGHKQLYRIIDFKRDKHNIPAKVAAIEYDPNRNARIALLYYQDG-----EKRYILHPNGLKVGTIIISGPESPFEDGNALPLSRIPLGTSVHNVEMTPGKGGQIVRAAGASAQVVA--KEGDYVTLKLPSGEVRLIRRDCYATIGQV---GNTDARNLSAGKA------GRNRWKGRRPKVRGSVMNPVDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_NITEC (50S ribosomal protein L2 OS=Nitrosomonas eutropha (strain C91) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 62/191 (32.46%), Postives = 96/191 (50.26%), Query Frame = 2
Query:  134 HTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            H HH      +R +DF      +   V  I +DP R A LA + +        +++  IAA+ +  G +V  G  + +  GN LP+R+IP G+V+  +E   G    LAR++G  A +++   + D ++++L SG  + I   CRA IG+V       + + KAG         R   P VRGVAMNPV+H
Sbjct:   58 HKHH------YRIVDFCRNKDDIPAKVERIEYDPNRSAYLALLCYADG-----ERKYIIAAKDIEVGSYVVNGSGSPVKTGNALPIRNIPVGSVIHCIELKPGKGAQLARSAGSSAQLMAR--EGDYSQIRLRSGEIRKIHINCRATIGEVGNSEHNLQSIGKAGAVRW-----RGIRPTVRGVAMNPVDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_MYCA5 (50S ribosomal protein L2 OS=Mycoplasma arthritidis (strain 158L3-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 63/201 (31.34%), Postives = 98/201 (48.76%), Query Frame = 2
Query:  110 GAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            G  +  K  T H  G  +  +R +DF      +   V  I +DP R A ++ V +        +K   I+ +G+  GQ +  G++  + +GN LP+++IPEG  V N+E      GV+AR++G  A I+  +       ++L SG  + I + CRA +G+V   G  E  L+  G A       R   P VRG AMNP +H
Sbjct:   43 GRNNQGKITTRHHGGRLKRFYRLVDFKRNKDDILATVKTIEYDPNRSANISLVVYADG-----EKRYIISPKGLKVGQKIISGEQVDIQIGNSLPLKNIPEGTYVHNIEMQPKQGGVIARSAGSSAQILGKDETGRYIILRLKSGEVRKILALCRATVGEV---GNEEHSLVNIGKAGR--NRLRGIRPTVRGSAMNPNDH 233          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_JANSC (50S ribosomal protein L2 OS=Jannaschia sp. (strain CCS1) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 61/205 (29.76%), Postives = 96/205 (46.83%), Query Frame = 2
Query:   92 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            I A+R+G G+              +R +DF      +   V  I +DP R A +A V +        ++   +A + +  G  V   KKA +  GN +P   +P G +V N+E   G  G +ARA+G YA  +    D    +++L SG  +++   C A +G V+    + + L KAG   H  +      P VRGVAMNP++H
Sbjct:   49 ITARRRGGGA-----------KRLYRIVDFKRTKFDVSATVERIEYDPNRTAFIALVRYEDG-----EQNYILAPQRLGVGDKVVASKKADIKPGNAMPFSGLPIGTIVHNIELKPGKGGQIARAAGTYAQFVGR--DGGYAQIRLSSGELRLVRQECMATVGAVSNPDNSNQNLGKAGRVRHMGK-----RPSVRGVAMNPIDH 230          
The following BLAST results are available for this feature:
BLAST of FC930788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_SHEB97.253e-1832.0450S ribosomal protein L2 OS=Shewanella baltica (st... [more]
RL2_SHEB87.253e-1832.0450S ribosomal protein L2 OS=Shewanella baltica (st... [more]
RL2_SHEB57.253e-1832.0450S ribosomal protein L2 OS=Shewanella baltica (st... [more]
RL2_SHEB27.253e-1832.0450S ribosomal protein L2 OS=Shewanella baltica (st... [more]
RL2_RICPR7.253e-1831.4450S ribosomal protein L2 OS=Rickettsia prowazekii ... [more]
RL2_PARL17.253e-1830.3050S ribosomal protein L2 OS=Parvibaculum lavamenti... [more]
RL2_NOSP77.253e-1831.4250S ribosomal protein L2 OS=Nostoc punctiforme (st... [more]
RL2_NITEC7.253e-1832.4650S ribosomal protein L2 OS=Nitrosomonas eutropha ... [more]
RL2_MYCA57.253e-1831.3450S ribosomal protein L2 OS=Mycoplasma arthritidis... [more]
RL2_JANSC7.253e-1829.7650S ribosomal protein L2 OS=Jannaschia sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionC34109A09EF PostHarvP1 Citrus clementina cDNA clone C34109A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930788 ID=FC930788; Name=FC930788; organism=Citrus clementina; type=EST; length=708bp
GCATCTTCCCAATCCACACATATATATATATATTCATCAGCCTGCCGCAC
AAGCTCAGTCTCTTTCGCCCTCTAAAGAAATGGGTCGTGTGATTCGCGCA
CAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGTAA
GGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTACC
TCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCCCG
CTGGCCCGAGTCACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAGGA
GCTTTTCATTGCCGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTGCG
GCAAGAAAGCCACTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTATC
CCTGAAGGAGCTGTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGCGG
TGTTTTGGCTAGAGCTTCTGGTGATTATGCCGTTATCATCAGTCATAACC
CCGATAATGACACCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGATT
ATTCCAAGTGGCTGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGGAG
GACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCATACCACAAATTCAGAG
TGAAGCGAAACTGCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCAGTG
GAGCATCC
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