FC930788
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_METPE (50S ribosomal protein L2P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl2p PE=3 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.231e-33 Identity = 83/210 (39.52%), Postives = 115/210 (54.76%), Query Frame = 2 Query: 80 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 MG I+ Q +G G +++ +H K A+ + L G ++GV+ +I HDP R P+A V + K + EG+ G V G +A + GN LP+ IP G+ +CN+E GD G RASG A+II D VK+PSG K S C A +G VAGGGR EKP +KAG +HK + + WP+VRGVAMN ++H Sbjct: 1 MGHRIKTQNRGRGGPTYRAPSHQYK--AELKHL--GNDKVTVRGVIIDIEHDPARHTPIALVRLEGEGK----KVYLLVTEGLGVGDQVAWGPEAEVKNGNTLPISKIPTGSYICNIEARPGDGGKFVRASGVQAIIIDKTVDR--VGVKMPSGKMKWFSSRCLATVGVVAGGGRGEKPFVKAGKKFHKVKSQATYWPRVRGVAMNVIDH 200
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_METLZ (50S ribosomal protein L2P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl2p PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 2.100e-33 Identity = 82/210 (39.05%), Postives = 114/210 (54.29%), Query Frame = 2 Query: 80 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 MG I Q +G G +++ +H K + FG ++ V +I HDP R P+A V + +KE + EG+ GQ + G +AT++ GN LP+ +IP G VCN+E GD G R+SG AVII + V++PSG K C A +G VAGGGR +KP+LKAG YHK + WP+VRGVAMN ++H Sbjct: 1 MGHRISTQSRGKGGPTYRAPSHQYKAELKH----FGSALETVRATVIDIEHDPARHTPIAVVKIEG--KASDKKEYALITEGVGIGQELVWGPEATVVNGNSLPLSAIPTGVAVCNIEARPGDGGKFVRSSGVQAVIIGKSAGK--VGVRMPSGKPKWFNEACLATVGLVAGGGRIDKPILKAGKQYHKMKTSATRWPRVRGVAMNVIDH 202
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_METB6 (50S ribosomal protein L2P OS=Methanoregula boonei (strain 6A8) GN=rpl2p PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 6.757e-32 Identity = 78/210 (37.14%), Postives = 112/210 (53.33%), Query Frame = 2 Query: 80 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 MG I Q +G G +++ +H K + G+ + G + +I HDP R AP+A V K + EG+ G+ V G + GN LP++SIP G+ +CN+E D G R++G AV++ + D V++PSG K + CRA +G VAGGGR EKP +KAGN HK R + WP+VRGVAMN ++H Sbjct: 1 MGHRITTQNRGRGGPTYRAPSHRYKAALKH----IGDGTKSISGSIIDIEHDPARNAPIALVQLEDG-----SKVYILVTEGIGIGETVAWGADVKVKNGNTLPLQSIPTGSYICNIESRPNDGGKFVRSTGVQAVVV--DKIGDRIGVRMPSGKTKWFNARCRATVGIVAGGGRVEKPFVKAGNKSHKMRNTASNWPRVRGVAMNVIDH 199
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_METS5 (50S ribosomal protein L2P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl2p PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.505e-31 Identity = 79/210 (37.62%), Postives = 116/210 (55.24%), Query Frame = 2 Query: 80 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 MG+ + QR G G++ F++ R G ++ ++ G+ V +I+H+PG P+A+V ++ A +G+ +GQ + G+ + +GN++P + +PEG V NVE H GD G AR +G YA+++ + R LPSG K I +G VAGGG EKPLLKAGN Y K++VK WP VRGVAMN V H Sbjct: 1 MGKKLLQQRAGRGNINFRNPGWLRVGKVRYPTI-----TGHHIAKVVDILHNPGMTEPVAKVKLDTGIQFF-----IPAVQGLISGQKIEVGEGSPASLGNIVPAKDLPEGVYVSNVELHRGDGGRYARTAGSYAIVVGKSEGKVILR--LPSGKIKEIDENALVTVGTVAGGGVLEKPLLKAGNNYWKYKVKATKWPDVRGVAMNVVSH 198
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_NANEQ (50S ribosomal protein L2P OS=Nanoarchaeum equitans GN=rpl2p PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.193e-28 Identity = 80/211 (37.91%), Postives = 114/211 (54.03%), Query Frame = 2 Query: 80 MGRV-IRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 MG+V + QR+G GS F+S TH G + + D +KG V +I D APL V + + + L A G+ G VY GK+A +G++ P+ IPEG + +E++ GD G L RASGD+A+++ D V+LPSG K + + RA+IG +AGGGR EKP +KAGN Y+ + WP V GV N +H Sbjct: 1 MGKVRLLVQRRGRGSPTFRSPTHRAAGKVKIPTFD----GDLVKGKVVALIKDSIHYAPLMVVKWENG-----AQSLLPAPLGISVGDTVYYGKEAPNAIGSIKPLSEIPEGTKIYMLENNPGDGGKLVRASGDFALLVQKL--GDKVIVQLPSGQFKTLSANARAVIGVIAGGGRKEKPFVKAGNKYYWASSRNRHWPVVNGVKKNASDH 200
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_METMJ (50S ribosomal protein L2P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.193e-28 Identity = 73/207 (35.27%), Postives = 104/207 (50.24%), Query Frame = 2 Query: 86 RVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 R+I R G +++ +H K + G+ + + G V +I HDP R AP+A +K +A EG+ G V G T+ GN LP+ IP GA VCN+E D G R+SG A++I D+ +++PSG K C A +G VAGGGR EKP +KAG + R WP+V+GV MN ++H Sbjct: 4 RIIAQNRGKGGPTYRAPSHRYKAALRHA----GKNDALVSGNVIDIEHDPARHAPIALARLDSG-----EKIYVLATEGLGVGDTVSWGTGGTVKNGNTLPLGEIPVGAYVCNIEARPNDGGKFVRSSGVQALVIG-KADDGRVGIRMPSGKNKWFNGACMATVGIVAGGGRGEKPFVKAGKKHFHVRSSSERWPRVKGVCMNVIDH 200
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_METHJ (50S ribosomal protein L2P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl2p PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.657e-28 Identity = 75/210 (35.71%), Postives = 105/210 (50.00%), Query Frame = 2 Query: 80 MGRVIRAQRKG-AGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 MG I Q +G G +++ +H K + G + + +I HDP R P+A V + + EGM G + G A + GN LP++ IP G+ VCN+E + D G RASG A + V++PSG+ K CRA IG VAGGGR+EKP +KAG YHK + + WP+VRG AMN ++H Sbjct: 1 MGHRITTQSRGHGGPTYRAPSHRYKAALKH----LGRAGETVSYKIIDIEHDPARHTPIALVDVPDG-----ENTYVLVTEGMGIGDVLTWGADAEIRNGNTLPLQEIPTGSSVCNIEAYPNDGGKFVRASGVQATVTDKMEGR--VAVRMPSGSTKWFNGQCRATIGIVAGGGRSEKPFVKAGKKYHKMKNTASNWPRVRGFAMNVIDH 199
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_CENSY (50S ribosomal protein L2P OS=Cenarchaeum symbiosum GN=rpl2p PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.938e-27 Identity = 72/210 (34.29%), Postives = 113/210 (53.81%), Query Frame = 2 Query: 80 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 MG+ +R+G G + F++ T + A++ + + GE+ +G V +++H+ GR APLA++ F A G G + G K+ + GNV+ V++IP+G VCNVE H GD G + +++G A + SH +KLPSG + RAM+G +AGGG +E+P + AG + +FR K +P VRGVA H Sbjct: 1 MGKRPLVRRRGRGGMQFRAATTGKIARAKYPAFELGEQR---EGTVIDLVHERGRDAPLAKIRFEDGI-----VSYVPAVLGTRVGSSMNFGLKSEIRDGNVISVQNIPDGTTVCNVEKHYGDGGAIVKSAGGNATVFSHGEGG--VVLKLPSGRFSTLNPKNRAMVGTLAGGGVSERPFMSAGGKWRRFRSKGRKYPIVRGVAQAAYVH 200
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_NITMS (50S ribosomal protein L2P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl2p PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.458e-26 Identity = 72/211 (34.12%), Postives = 114/211 (54.03%), Query Frame = 2 Query: 80 MGRVIRAQRKG-AGSVFKSHTHHRKGP-AQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 MG+ +R+G G+ F+S + + G A + E++ +G + +++H+ GR APLA+V F A G G+ + G K+ + GNV+ +++IP+G +VCN+E H GD G + +++G A + SH + T VKLPSG + RAMIG +AGGG +E+P + AG + F+ K +P VRGVA H Sbjct: 1 MGKRPLVRRRGRGGNQFRSTSTGKVGTKANYPRFPLSEQH---EGEIIDLVHERGREAPLAKVRFEDG-----SVSFVPAVLGAKVGETLQFGLKSKIEKGNVISIQNIPDGTIVCNIEKHFGDGGAIVKSAGTDATVFSHGDEGVT--VKLPSGKFTTLNPKNRAMIGTLAGGGASERPFMSAGGKWRNFKAKGKKYPIVRGVAQAAYVH 201
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_THEVO (50S ribosomal protein L2P OS=Thermoplasma volcanium GN=rpl2p PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.365e-24 Identity = 77/210 (36.67%), Postives = 106/210 (50.48%), Query Frame = 2 Query: 80 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 MG+ I QR+G GS V++S +H + L GE VV +IIH PGR +PL + +K IA G Y GQ + G T+ G + +IP+G+ V N+E GD G R++G +A+++SH +KLPSG+ + CRA +G VA G + P+LKAG H R K VRGVAMN V H Sbjct: 1 MGKHIIPQRRGHGSLVYRSPSHRHV--VDVKHLKPGEY------VVKDIIHAPGRNSPLLELVDS-----TGKKVYQIAFTGAYVGQKIVAGNVDTINPGTTTVLANIPDGSYVYNIESSPGDGGEFCRSAGTFALVVSHG---SRVTLKLPSGSMRDFDPRCRATVGVVAASGIIDAPILKAGTHVHYLRSKAKRPYTVRGVAMNAVNH 194 The following BLAST results are available for this feature:
BLAST of FC930788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930788 ID=FC930788; Name=FC930788; organism=Citrus clementina; type=EST; length=708bpback to top |