FC930789

Overview
NameFC930789
Unique NameFC930789
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: YGCW_ECOLI (Uncharacterized oxidoreductase ygcW OS=Escherichia coli (strain K12) GN=ygcW PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.249e-14
Identity = 55/193 (28.50%), Postives = 88/193 (45.60%), Query Frame = 1
Query:  115 WSLQGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTNFESAFHLCQLAHPLLRASGAASIVLMSSALGIVSANVGTVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRTPFT 693
            +SL+G TA+VTGG  GLG A    L+  GA +   S  +    E    ++ +G++V      +++    Q +I      F G ++I VNN G   L   L++   D+  ++  N  +AF L   A  ++    +  I+ + S    +       YSATK A+    K    E  + NI+ N +AP Y  T  T
Sbjct:   14 FSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDN-GETKEMIEKQGVEVDFMQVGITAEGAPQKIIAACCERF-GTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDIT 204          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: DECR2_ARATH (Peroxisomal 2,4-dienoyl-CoA reductase OS=Arabidopsis thaliana GN=At3g12800 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.249e-14
Identity = 52/192 (27.08%), Postives = 91/192 (47.40%), Query Frame = 1
Query:  121 LQGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTNFESAFHLCQLAHPLLR--------ASGAASIVLMSSALGIVSANVGTVYSATKGAMNQLAKNLACEWAKD-NIRTNSVAP 669
            ++G  AL+TGG  G+G  +  +    GA++    R +  L++ +  L+  G++  G   DV  +   + ++      F GKL+I VN    + L    + +   F  V+  +    F++C  A   L+        +SG  SI+ +S+ L   ++      SA K A++   +NLA EW  D +IR N +AP
Sbjct:   10 VRGQVALITGGGSGIGFEISSQFGKHGASIAIMGRRKQVLDDAVSALRSLGIQAIGLEGDVRKQEDARRVVEATFQHF-GKLDILVNAAAGNFLAAAEDLSPNGFRTVLDIDAVGTFNMCHAALKYLKKGAPGRDSSSGGGSIINISATLHYTASWYQIHVSAAKAAVDATTRNLALEWGTDYDIRVNGIAP 200          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: KDUD_DICD3 (2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=Dickeya dadantii (strain 3937) GN=kduD PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.631e-14
Identity = 55/197 (27.92%), Postives = 96/197 (48.73%), Query Frame = 1
Query:  109 NRWSLQGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTNFESAFHLCQ-LAHPLLRASGAASIVLMSSALGIVSANVGTVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRTPFTE 696
            N ++LQG  AL+TG   GLG  +   L+  G  +   +  E +  E I  +   G +      D+S       L+    + F GK++I VNN G    +  +E++ +++  VM+ N +S F + Q +A   ++      I+ ++S L          Y+A+K  +  + + +A EWAK NI  N++AP Y+ T  T+
Sbjct:    4 NTFNLQGKVALITGCDTGLGQGMAVGLAEAGCDIVGVNIVEPK--ETIEKVTAVGRRFLSLTADMSDISGHAALVEKAVAEF-GKVDILVNNAGIIRREDAIEFSEKNWDDVMNLNIKSVFFMSQTVARQFIKQGHGGKIINIASMLSFQGGIPVPSYTASKKRVMGITRIVANEWAKHNINVNAIAPGYMATNNTQ 197          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: Y2478_STAAM (Uncharacterized oxidoreductase SAV2478 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV2478 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 47/186 (25.27%), Postives = 88/186 (47.31%), Query Frame = 1
Query:  136 ALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTNFESAFHLCQLAHPLLRASGAASIVLMSSALGIVSANVGTVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRTPFT 693
            A+VTG   G+G A+   L   GA V    R + +L    + L    +KV  +  DV+++ +   L+      F G L+I +N+ G  +     +Y  +++  ++  N +   +  Q A P +    +  ++ ++S  G       T+YSATK A++ + + L  E AK  ++  S++P  + T  T
Sbjct:    9 AVVTGAGSGIGEAIATLLHEEGAKVVLAGRNKDKLQNVANQLAQDSVKVVPT--DVTNKEEVDELMKIAQQTFGG-LDIVINSAGQMLSSKITDYQVDEWDSMIDVNIKGTLYTAQAALPTMLEQSSGHLINIASISGFEVTKSSTIYSATKAAVHTITQGLEKELAKTGVKVTSISPGMVDTAIT 191          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: Y2266_STAAN (Uncharacterized oxidoreductase SA2266 OS=Staphylococcus aureus (strain N315) GN=SA2266 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 47/186 (25.27%), Postives = 88/186 (47.31%), Query Frame = 1
Query:  136 ALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTNFESAFHLCQLAHPLLRASGAASIVLMSSALGIVSANVGTVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRTPFT 693
            A+VTG   G+G A+   L   GA V    R + +L    + L    +KV  +  DV+++ +   L+      F G L+I +N+ G  +     +Y  +++  ++  N +   +  Q A P +    +  ++ ++S  G       T+YSATK A++ + + L  E AK  ++  S++P  + T  T
Sbjct:    9 AVVTGAGSGIGEAIATLLHEEGAKVVLAGRNKDKLQNVANQLAQDSVKVVPT--DVTNKEEVDELMKIAQQTFGG-LDIVINSAGQMLSSKITDYQVDEWDSMIDVNIKGTLYTAQAALPTMLEQSSGHLINIASISGFEVTKSSTIYSATKAAVHTITQGLEKELAKTGVKVTSISPGMVDTAIT 191          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: FABG_BACSU (3-oxoacyl-[acyl-carrier-protein] reductase OS=Bacillus subtilis GN=fabG PE=3 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 57/194 (29.38%), Postives = 96/194 (49.48%), Query Frame = 1
Query:  121 LQGMTALVTGGTKGLGLAVVEELSMLGA-TVHTCSRTETELNECIHHLQMKGLKVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTNFESAFHLCQLAHPLLRASGAASIVLMSSALGIVSANVGTV-YSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRTPFTE 696
            L   TA+VTG ++G+G ++  +L+  GA  V   S  E + NE +  ++  G K      DVS+    Q +I    S+F+  ++I VNN G +     +    +++  V++ N +  F+  +     +    +  I+ +SS +G VS N G   Y A K  +  L K+ A E A  NI  N++AP +I T  T+
Sbjct:    2 LNDKTAIVTGASRGIGRSIALDLAKSGANVVVNYSGNEAKANEVVDEIKSMGRKAIAVKADVSNPEDVQNMIKETLSVFS-TIDILVNNAGITRDNLIMRMKEDEWDDVININLKGVFNCTKAVTRQMMKQRSGRIINVSSIVG-VSGNPGQANYVAAKAGVIGLTKSSAKELASRNITVNAIAPGFISTDMTD 193          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: FABG_AQUAE (3-oxoacyl-[acyl-carrier-protein] reductase OS=Aquifex aeolicus GN=fabG PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 61/193 (31.61%), Postives = 93/193 (48.19%), Query Frame = 1
Query:  121 LQGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMK-GLKVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTNFESAFHLCQLAHPLLRASGAASIVLMSSALGIVSANVGTV-YSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRTPFT 693
            LQG  +LVTG T+G+G A+ E+L+  G+TV     +          +  K G+K  G   ++ S          + +L +G ++I VNN G +  K  L  +  D+  V+  N    F + Q +   +       IV +SS +G  + NVG V YS TK  +    K+LA E A  N+  N+VAP +I T  T
Sbjct:    5 LQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVDG-IDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGF-TGNVGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMT 195          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: DCXR_MESAU (L-xylulose reductase OS=Mesocricetus auratus GN=DCXR PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 59/190 (31.05%), Postives = 97/190 (51.05%), Query Frame = 1
Query:  121 LQGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVC-DVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTNFESAFHLCQLAHPLLRASGA-ASIVLMSSALGIVSANVGTVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRT 684
            L G  ALVTG  KG+G + V  L   GA V   SRT+ +L+  +   +  G++   +VC D++     +  +++V     G +++ VNN   ++L+P LE   E F +  + N  +   + Q+    + A GA  +IV +SS     +    +VY +TKGA++ L K +A E     IR N+V P  + T
Sbjct:    5 LAGRRALVTGAGKGIGRSTVLALQAAGAHVVAVSRTQADLDSLVS--ECPGVE---TVCVDLADWEATEQALSSV-----GPVDLLVNNAAVALLQPFLEVTKEAFDMSFNVNLRAVIQVSQIVARGMIARGAPGAIVNVSSQASQRALANHSVYCSTKGALDMLTKMMALELGPHKIRVNAVNPTVVMT 184          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: RHLG_PSEAE (Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase OS=Pseudomonas aeruginosa GN=rhlG PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.782e-14
Identity = 60/190 (31.58%), Postives = 87/190 (45.79%), Query Frame = 1
Query:  115 WSLQGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTNFESAFHLCQLAHPLLRASGAAS----IVLMSSALGI-VSANVGTVYSATKGAMNQLAKNLACEWAKDNIRTNSVAP 669
            +SL G  ALVTGG++G+G  + + L   GA V  C+R      +    L   G        D+SS    + L   +  L + +L+I VNN GTS       Y    +  VM  N  S F   Q   PLLR S +A     ++ + S  GI         Y  +K A++QL++ LA E   ++I  N +AP
Sbjct:    5 FSLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYG-DCQAIPADLSSEAGARRLAQALGEL-SARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMGEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAP 192          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: YKVO_BACSU (Uncharacterized oxidoreductase ykvO OS=Bacillus subtilis GN=ykvO PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.633e-14
Identity = 57/188 (30.32%), Postives = 82/188 (43.62%), Query Frame = 1
Query:  124 QGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTNFESAFHLCQLAHPLLRASGAASIVLMSSALGIVSANVGTVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRTP 687
            +G  ALVTGGT G+GLA  ++    GA V+   R + EL++ ++ +   G  VTG   D+S       L + +     GKL+I   N G     P  E   E        N +      Q A  L       SI++  S  G +     +VY A+K A+  L +N   +     IR N V+P  I TP
Sbjct:    5 EGKIALVTGGTSGIGLATAQKFVNEGAYVYITGRRQNELDKAVNQI---GKNVTGVQGDISKLEDLDKLYDIIKQ-EKGKLDILFANAGIGNFLPLGEITEEQVDRTFDINVKGTIFTVQKALSLF-PDKVGSIIVTGSTAGSIGNPAFSVYGASKAALRALVRNWILDLKGTEIRVNVVSPGGILTP 187          
The following BLAST results are available for this feature:
BLAST of FC930789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
YGCW_ECOLI1.249e-1428.50Uncharacterized oxidoreductase ygcW OS=Escherichia... [more]
DECR2_ARATH1.249e-1427.08Peroxisomal 2,4-dienoyl-CoA reductase OS=Arabidops... [more]
KDUD_DICD31.631e-1427.922-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=D... [more]
Y2478_STAAM2.130e-1425.27Uncharacterized oxidoreductase SAV2478 OS=Staphylo... [more]
Y2266_STAAN2.130e-1425.27Uncharacterized oxidoreductase SA2266 OS=Staphyloc... [more]
FABG_BACSU2.130e-1429.383-oxoacyl-[acyl-carrier-protein] reductase OS=Baci... [more]
FABG_AQUAE2.130e-1431.613-oxoacyl-[acyl-carrier-protein] reductase OS=Aqui... [more]
DCXR_MESAU2.130e-1431.05L-xylulose reductase OS=Mesocricetus auratus GN=DC... [more]
RHLG_PSEAE2.782e-1431.58Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-... [more]
YKVO_BACSU3.633e-1430.32Uncharacterized oxidoreductase ykvO OS=Bacillus su... [more]

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Properties
Property NameValue
Genbank descriptionC34109A10EF PostHarvP1 Citrus clementina cDNA clone C34109A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930789 ID=FC930789; Name=FC930789; organism=Citrus clementina; type=EST; length=696bp
GAAGCAAACTAAGGCAATATAATAGCGGCCAGCAATACTAGAAGAGGAAG
AGACAGAGCAGAGATCAGAATGGCTCAGCCTCAGCAGACAGAGAGCCATA
GCAGGCAAAACAGATGGAGTCTTCAGGGCATGACAGCTCTTGTTACTGGC
GGCACCAAAGGACTCGGGCTTGCTGTTGTAGAGGAACTGTCAATGCTAGG
CGCCACTGTGCATACATGCTCCAGGACTGAAACAGAGCTTAATGAATGTA
TACATCACCTGCAGATGAAAGGTTTGAAAGTCACCGGTTCAGTCTGTGAT
GTATCGTCTCGACCTCAAAGACAGACGCTAATCAACACAGTCTCCTCTCT
GTTTAATGGCAAACTTAACATCTTTGTAAACAATGTTGGAACAAGTGTAC
TAAAGCCAACTCTCGAGTACAATGCTGAAGATTTTTCATTAGTAATGTCT
ACAAATTTCGAGTCTGCCTTCCACTTATGTCAACTTGCACATCCTCTGTT
GAGAGCTTCTGGGGCAGCAAGCATTGTTCTCATGTCTTCAGCACTAGGCA
TTGTATCAGCAAACGTTGGAACCGTCTATTCAGCTACTAAAGGAGCAATG
AATCAACTTGCAAAAAATTTGGCATGTGAGTGGGCAAAAGACAACATAAG
GACCAATTCTGTCGCTCCTTGGTACATCAGAACTCCCTTTACTGAA
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