FC930789

Overview
NameFC930789
Unique NameFC930789
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: BAIA1_EUBSP (Bile acid 7-dehydroxylase 1/3 OS=Eubacterium sp. (strain VPI 12708) GN=baiA1 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 53/196 (27.04%), Postives = 91/196 (46.43%), Query Frame = 1
Query:  121 LQGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGL----KVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTNFESAFHLCQLAHPLLRASGAASIVLMSSALGIVSANVGTVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRTPFTE 696
            +Q    ++TGGT+G+G A  +     GA V     T+ E++  +   Q+K L    +V G   D++SR      + TV+  + G+L++ +NN G ++       + EDF  +M  N    F+    A+  ++ +    I+  +S  GI  +  G  Y  +K  +  L   L  E  + NIR   VAP  + T  T+
Sbjct:    4 VQDKITIITGGTRGIGFAAAKLFIENGAKVSIFGETQEEVDTAL--AQLKELYPEEEVLGFAPDLTSRDAVMAAVGTVAQKY-GRLDVMINNAGITMNSVFSRVSEEDFKNIMDINVNGVFNGAWSAYQCMKDAKQGVIINTASVTGIYGSLSGIGYPTSKAGVIGLTHGLGREIIRKNIRVVGVAPGVVDTDMTK 196          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: YF3H_SCHPO (Uncharacterized oxidoreductase C22A12.17c OS=Schizosaccharomyces pombe GN=SPAC22A12.17c PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 58/211 (27.49%), Postives = 95/211 (45.02%), Query Frame = 1
Query:   70 MAQPQQTESHSRQNRWSLQGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTNFESAFHLCQLAHPLLRASGAASIVLMSSALGIVSANV---GTVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRTPFT 693
            +A     ES +  +  SL+G  A+V GG +G+G A+    +  GA       T           Q  G+K     CDV+   + +     +  +F+  ++I V N G    K  ++   E+F+  ++ N    F++   A P+ +  G  S+V  +S  G+V  NV      Y+ +K  + QL K+LA EW K   R N V+P Y  +  T
Sbjct:    2 VAPAHNYESRNILDLLSLKGKNAVVFGGARGIGHAICSVFAEAGANAFIVYNTTPGEKAAKEIAQANGVKTYTCKCDVTIPKEVEHAFAEIQKVFD-TIDIVVPNNGICTGKSAIDMTYEEFANEINVNLLGVFNVAHNAGPIFQKQGHGSLVATASMSGVV-VNVPQQQCAYNTSKAGVIQLIKSLAVEWRK-FARVNCVSPGYTTSDMT 209          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: Y2146_BRAJA (Probable short-chain type dehydrogenase/reductase blr2146 OS=Bradyrhizobium japonicum GN=blr2146 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 55/191 (28.80%), Postives = 81/191 (42.41%), Query Frame = 1
Query:  124 QGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPT----LEYNAEDFSLVMSTNFESAFHLCQLAHPLLRASGAASIVLMSSALGIVSANVGTVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRT 684
            +G  A+VTG   G+G A    ++  G  V       +    C   +  +         D++       L  T    F G +++ VNN     L P     LE     +   M+TN       C+ A P + A G  +IV MSS  G+      T Y+A+K AMN L+ +LA ++    IR N+VAP  I T
Sbjct:    5 EGKVAVVTGAGAGIGKACALAIAREGGRVVVADIDGSAAIACTAQIAAEAGHALALAIDIADAQAVAALFETAERHFGG-VDLLVNNASAMHLTPRDRAILELELAVWDQTMATNLRGTLLCCRQAIPRMIARGGGAIVNMSSCQGLSGDTALTSYAASKAAMNMLSSSLATQYGHAQIRCNAVAPGLIMT 194          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: FABG_CHLTR (3-oxoacyl-[acyl-carrier-protein] reductase OS=Chlamydia trachomatis GN=fabG PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 53/194 (27.32%), Postives = 98/194 (50.52%), Query Frame = 1
Query:  121 LQGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHL-QMKGLKVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTNFESAFHLCQ-LAHPLLRASGAASIVLMSSALGIVSANVGTVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRTPFTE 696
            L   TA+VTGG++G+G ++ +  +  GA V                L +  G +V+ ++ DVS        +    + +N  +++ VNN G +     +  + E++S V++TN  S +++C  +  P+++A   A I+ +SS +G+  +   T Y+A K  +   +K L+ E    NIR N +AP +I T  T+
Sbjct:    5 LVNKTAIVTGGSRGIGFSIAKLFAEQGANVQIWGINGEAGQAAAQTLSEQTGRQVSFALVDVSKNDMVSAQVQNFLAEYN-TIDVIVNNAGITRDALLMRMSEEEWSSVINTNLGSIYNVCSAVIRPMIKARSGA-IINISSIVGLRGSPGQTNYAAAKAGIIGFSKALSKEVGSKNIRVNCIAPGFIDTDMTK 196          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: DHB14_HUMAN (17-beta-hydroxysteroid dehydrogenase 14 OS=Homo sapiens GN=HSD17B14 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 57/192 (29.69%), Postives = 92/192 (47.92%), Query Frame = 1
Query:  127 GMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVG--TSVLKPTLEYNAEDFSLVMSTNFESAFHLCQLAHPLLRASGAASIVLMSSALGIVSANVGTVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRTPFTE 696
            G   +VTGG +G+G  +V      GA V  C + E+        L+ +       +CDV+     +TL++     F G+L+  VNN G      +P  E +A+ F  ++  N    + L +LA P LR S   +++ +SS +G +       Y ATKGA+  + K LA + +   +R N ++P  I TP  E
Sbjct:    9 GKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRA----LEQELPGAVFILCDVTQEDDVKTLVSETIRRF-GRLDCVVNNAGHHPPPQRPE-ETSAQGFRQLLELNLLGTYTLTKLALPYLRKS-QGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWE 193          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: DCXR_CAVPO (L-xylulose reductase OS=Cavia porcellus GN=DCXR PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 59/191 (30.89%), Postives = 91/191 (47.64%), Query Frame = 1
Query:  121 LQGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVC-DVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTNFESAFHLCQLAHPLLRASGA-ASIVLMSSALGIVSANVGTVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRTP 687
            L G  ALVTG  KG+G + V  L   GA V   SRT  +L++ +   +  G++    VC D++     +  ++ V     G  ++ VNN   ++L+P LE   E      + N  +   + Q+    + A G   +IV +SS     +    TVY +TKGA+  L K +A E     IR N+V P  + TP
Sbjct:    5 LAGRRALVTGAGKGIGRSTVLALKAAGAQVVAVSRTREDLDDLVR--ECPGVE---PVCVDLADWEATEQALSNV-----GPADLLVNNAAVALLQPFLEVTKEACVTSFNVNLRAVIQVSQIVAKGMIARGVPGAIVNVSSQASQRALTNHTVYCSTKGALYMLTKMMALELGPHKIRVNAVNPTVVMTP 185          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: MTDH_CLAHE (Probable NADP-dependent mannitol dehydrogenase OS=Cladosporium herbarum PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 57/215 (26.51%), Postives = 101/215 (46.98%), Query Frame = 1
Query:   70 MAQPQQTESHSRQNRWSLQGMTALVTG--GTKGLGLAVVEELSMLGATVHTCSRTETE-LNECIHHLQMK-GLKVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTNFESAFHLCQLAHPLLRASGAASIVLMSSALGIVS--ANVGTVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRTPFTE 696
            M   Q T+  S  ++ SL+G   +VTG  G KG+G+      + +GA V     +  +   E +  L+   G+K     C V S    + L+  V + F G+++ F+ N G +     L+ + E ++ V+  +    FH  +      +  G  S+V+ +S  G ++      T Y+  K     +A++LA EW +D  R NS++P YI T  ++
Sbjct:    1 MPGQQATKHESLLDQLSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDVVADF-GQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIANFPQEQTSYNVAKAGCIHMARSLANEW-RDFARVNSISPGYIDTGLSD 213          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: DHB8_RAT (Estradiol 17-beta-dehydrogenase 8 OS=Rattus norvegicus GN=Hsd17b8 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 60/201 (29.85%), Postives = 94/201 (46.77%), Query Frame = 1
Query:  121 LQGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGL-------KVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTNFESAFHLCQLA-HPLLRASGAASIVLMSSALGIVSANVG-TVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRTPFTE 696
            L+   ALVTG   G+G A+   L+  GA V  C        + +  L   G        K      DVS  P  + L+  V + F    ++ V+  G +  +  L  + ED+  V++ N +  F + Q A   L+ + G  SI+ +SS +G V  N+G T Y+++K  +  L +  A E  +  IR NSV P +I TP T+
Sbjct:    7 LRSALALVTGAGSGIGRAISVRLAAEGAAVAACDLDGAAAQDTVRLLGNPGSEDREPRGKHAAFQADVSEGPAAKRLLEQVQACFFRPPSVVVSCAGITRDEFLLHMSEEDWDRVIAVNLKGTFLVTQAAAQALVSSGGRGSIINISSIVGKVG-NIGQTNYASSKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQ 206          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: BUTA_STAES (Acetoin(diacetyl) reductase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=butA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 52/185 (28.11%), Postives = 83/185 (44.86%), Query Frame = 1
Query:  133 TALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTN-FESAFHLCQLAHPLLRASGAASIVLMSSALGIVSANVGTVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRT 684
            TA++TG   GLG  + E L+  G  +      E  L E     + KG +      DVS + +++ L+    + F G+L++ VNN G   + P LE   E+ S + + N F + F +   A+  ++      I+   S  G  S  V   YSATK ++    +  A E A   I  N+  P   +T
Sbjct:    4 TAIITGAAGGLGKGIAERLANDGFNIVLQDINEALLLETEKEFKEKGYQAVAYKSDVSKKKEQEELVQFAVTEF-GQLDVMVNNAGVDAVTPILEIGEEELSKLFNINVFGTLFGIQAAANQFIKQKSKGKIINACSIAGHESYEVLGTYSATKHSVRSFTQTAAKELADKGITVNAYCPGVAKT 187          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: BUTA_STAEQ (Acetoin(diacetyl) reductase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=butA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 52/185 (28.11%), Postives = 83/185 (44.86%), Query Frame = 1
Query:  133 TALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTN-FESAFHLCQLAHPLLRASGAASIVLMSSALGIVSANVGTVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRT 684
            TA++TG   GLG  + E L+  G  +      E  L E     + KG +      DVS + +++ L+    + F G+L++ VNN G   + P LE   E+ S + + N F + F +   A+  ++      I+   S  G  S  V   YSATK ++    +  A E A   I  N+  P   +T
Sbjct:    4 TAIITGSAGGLGKGIAERLANDGFNIVLQDINEALLLETEKEFKEKGYQAVAFKSDVSKKKEQEELVQFAVTEF-GQLDVMVNNAGVDAVTPILEIGEEELSKLFNINVFGTLFGIQAAANQFIKQKSKGKIINACSIAGHESYEVLGTYSATKHSVRSFTQTAAKELADKGITVNAYCPGVAKT 187          
The following BLAST results are available for this feature:
BLAST of FC930789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
BAIA1_EUBSP2.355e-1327.04Bile acid 7-dehydroxylase 1/3 OS=Eubacterium sp. (... [more]
YF3H_SCHPO3.076e-1327.49Uncharacterized oxidoreductase C22A12.17c OS=Schiz... [more]
Y2146_BRAJA3.076e-1328.80Probable short-chain type dehydrogenase/reductase ... [more]
FABG_CHLTR3.076e-1327.323-oxoacyl-[acyl-carrier-protein] reductase OS=Chla... [more]
DHB14_HUMAN3.076e-1329.6917-beta-hydroxysteroid dehydrogenase 14 OS=Homo sa... [more]
DCXR_CAVPO3.076e-1330.89L-xylulose reductase OS=Cavia porcellus GN=DCXR PE... [more]
MTDH_CLAHE4.017e-1326.51Probable NADP-dependent mannitol dehydrogenase OS=... [more]
DHB8_RAT4.017e-1329.85Estradiol 17-beta-dehydrogenase 8 OS=Rattus norveg... [more]
BUTA_STAES4.017e-1328.11Acetoin(diacetyl) reductase OS=Staphylococcus epid... [more]
BUTA_STAEQ4.017e-1328.11Acetoin(diacetyl) reductase OS=Staphylococcus epid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34109A10EF PostHarvP1 Citrus clementina cDNA clone C34109A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930789 ID=FC930789; Name=FC930789; organism=Citrus clementina; type=EST; length=696bp
GAAGCAAACTAAGGCAATATAATAGCGGCCAGCAATACTAGAAGAGGAAG
AGACAGAGCAGAGATCAGAATGGCTCAGCCTCAGCAGACAGAGAGCCATA
GCAGGCAAAACAGATGGAGTCTTCAGGGCATGACAGCTCTTGTTACTGGC
GGCACCAAAGGACTCGGGCTTGCTGTTGTAGAGGAACTGTCAATGCTAGG
CGCCACTGTGCATACATGCTCCAGGACTGAAACAGAGCTTAATGAATGTA
TACATCACCTGCAGATGAAAGGTTTGAAAGTCACCGGTTCAGTCTGTGAT
GTATCGTCTCGACCTCAAAGACAGACGCTAATCAACACAGTCTCCTCTCT
GTTTAATGGCAAACTTAACATCTTTGTAAACAATGTTGGAACAAGTGTAC
TAAAGCCAACTCTCGAGTACAATGCTGAAGATTTTTCATTAGTAATGTCT
ACAAATTTCGAGTCTGCCTTCCACTTATGTCAACTTGCACATCCTCTGTT
GAGAGCTTCTGGGGCAGCAAGCATTGTTCTCATGTCTTCAGCACTAGGCA
TTGTATCAGCAAACGTTGGAACCGTCTATTCAGCTACTAAAGGAGCAATG
AATCAACTTGCAAAAAATTTGGCATGTGAGTGGGCAAAAGACAACATAAG
GACCAATTCTGTCGCTCCTTGGTACATCAGAACTCCCTTTACTGAA
back to top