FC930792

Overview
NameFC930792
Unique NameFC930792
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ARP6_DROME (Actin-like protein 13E OS=Drosophila melanogaster GN=Actr13E PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11
Identity = 48/189 (25.40%), Postives = 88/189 (46.56%), Query Frame = 2 
Query:  131 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPI--EHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLY-----ASGRTT-----GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 658
            +V DNG    K G A  D P  V P+ + + +         ++ A+VG++    R    L Y +  + G + NW   + +W + F  + +  + E   +++TE  +N ++ +E   +I+FE + V  +Y    A L+ +     +  RTT      I++D G   +H VP   G  +   I R+D+ G+
Sbjct:    6 VVLDNGAHTAKVGLANQDEPHVV-PNCIMKAKSE-------RRRAFVGNQIDECRDTSALYYILAFQRGYLLNWHTQKTVWDYIFSKDGIGCSLENRNIVITEPQMNFQSIQEATLEILFEEYKVDGVYKTTAADLAAFNYVADSEERTTMESLNCIIIDVGYSFTHVVPFVLGRRVLQGIRRIDMGGK 186
The following BLAST results are available for this feature:
BLAST of FC930792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 471
Match NameE-valueIdentityDescription
ARP6_DROME9.836e-1125.40Actin-like protein 13E OS=Drosophila melanogaster ... [more]

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Properties
Property NameValue
Genbank descriptionC34109B01EF PostHarvP1 Citrus clementina cDNA clone C34109B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930792 ID=FC930792; Name=FC930792; organism=Citrus clementina; type=EST; length=663bp
GAGTGCTTCTCCGCTTCCGCTAGCTGAAGTTAATCTTTTACTTGCGTTCC
ACAGATTAGAAGATTAAACGCTTTTCCTTTGCTTAATCAAAGAATCATAA
AAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAAC
TGGAATGGTCAAGGCTGGTTTTGCTGGTGATGATGCTCCAAGGGCAGTTT
TCCCTAGTATTGTTGGCAGACCTCGTCACACAGGCGTAATGGTTGGGATG
GGTCAAAAGGATGCTTACGTAGGTGATGAAGCCCAATCAAAAAGGGGTAT
CCTAACTTTGAAGTACCCAATTGAGCATGGTATAGTCAGCAATTGGGATG
ACATGGAAAAGATTTGGCATCACACTTTCTACAATGAGCTTCGTGTGGCC
CCTGAGGAACACCCTGTACTTCTGACTGAAGCACCACTCAACCCTAAAGC
CAACAGAGAGAAAATGACCCAGATCATGTTTGAAACCTTCAATGTGCCTG
CTATGTATGTTGCAATCCAGGCCGTTCTTTCCCTTTATGCCAGTGGTCGT
ACAACAGGTATTGTGTTGGATTCTGGTGATGGTGTGAGCCACACAGTACC
GATTTATGAAGGCTATGCCCTCCCTCATGCCATCCTTCGGTTGGACCTTG
CTGGTCGTGATCT
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