FC930796

Overview
NameFC930796
Unique NameFC930796
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_STAAC (Ribose-phosphate pyrophosphokinase OS=Staphylococcus aureus (strain COL) GN=prs PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.599e-18
Identity = 41/76 (53.95%), Postives = 59/76 (77.63%), Query Frame = 1
Query:  445 NRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            N   N+ +K+FS   N AL+QE+A  +G+ELGK ++KRF+DGEI + ++ES+RGCDV+++QPT  P N +LMELLI
Sbjct:    4 NEYKNSSLKIFSLKGNEALAQEVADQVGIELGKCSVKRFSDGEIQINIEESIRGCDVFIIQPTSYPVNLHLMELLI 79          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_STAS1 (Ribose-phosphate pyrophosphokinase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=prs PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.618e-18
Identity = 40/76 (52.63%), Postives = 59/76 (77.63%), Query Frame = 1
Query:  445 NRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            N   N+ +K+FS   N  L+QE+A ++G+ELGK ++KRF+DGEI + ++ES+RGCDV+++QPT  P N +LMELLI
Sbjct:    4 NEYKNSALKIFSLKGNEPLAQEVADHVGIELGKCSVKRFSDGEIQINIEESIRGCDVFIIQPTSNPVNLHLMELLI 79          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_STAES (Ribose-phosphate pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=prs PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.126e-17
Identity = 41/76 (53.95%), Postives = 59/76 (77.63%), Query Frame = 1
Query:  445 NRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            N   N+ +K+FS   N  L+QE+A ++G+ELGK ++KRF+DGEI + ++ES+RGCDV++VQPT  P N +LMELLI
Sbjct:    4 NEYKNSSMKIFSLKGNEPLAQEVADHVGIELGKCSVKRFSDGEIQINIEESIRGCDVFIVQPTSYPVNLHLMELLI 79          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_STAEQ (Ribose-phosphate pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=prs PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.126e-17
Identity = 41/76 (53.95%), Postives = 59/76 (77.63%), Query Frame = 1
Query:  445 NRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            N   N+ +K+FS   N  L+QE+A ++G+ELGK ++KRF+DGEI + ++ES+RGCDV++VQPT  P N +LMELLI
Sbjct:    4 NEYKNSSMKIFSLKGNEPLAQEVADHVGIELGKCSVKRFSDGEIQINIEESIRGCDVFIVQPTSYPVNLHLMELLI 79          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_THEMA (Ribose-phosphate pyrophosphokinase OS=Thermotoga maritima GN=prs PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.508e-17
Identity = 41/72 (56.94%), Postives = 57/72 (79.17%), Query Frame = 1
Query:  457 NNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            +N +K+FSG AN  L+++IA Y+ ++LG   + RFADGEI V++ E+VRG D++L+QPT PP NENLMELLI
Sbjct:    4 SNEMKVFSGNANRPLAEKIANYLNLQLGDCEVGRFADGEINVRINETVRGHDIFLIQPTSPPVNENLMELLI 75          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_STAHJ (Ribose-phosphate pyrophosphokinase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=prs PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.508e-17
Identity = 40/76 (52.63%), Postives = 58/76 (76.32%), Query Frame = 1
Query:  445 NRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            N   N+ +K+FS   N  L+QE+A  +G+ELGK ++KRF+DGEI + ++ES+RGCDV+++QPT  P N +LMELLI
Sbjct:    4 NEYKNSSLKIFSLKGNEPLAQEVADRVGIELGKCSVKRFSDGEIQINIEESIRGCDVFIIQPTSNPVNLHLMELLI 79          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_OCEIH (Ribose-phosphate pyrophosphokinase OS=Oceanobacillus iheyensis GN=prs PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.277e-17
Identity = 38/72 (52.78%), Postives = 56/72 (77.78%), Query Frame = 1
Query:  457 NNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            ++ +K+FS  +NP L+ EIA ++G  LGK  + +F+DGE+ + L+ESVRGCDVY+VQ TC P N+++MELLI
Sbjct:    7 DSSLKVFSLNSNPELANEIATHIGTNLGKCTVSKFSDGEVQINLEESVRGCDVYVVQSTCAPVNQHIMELLI 78          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_DESPS (Ribose-phosphate pyrophosphokinase OS=Desulfotalea psychrophila GN=prs PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.586e-17
Identity = 35/71 (49.30%), Postives = 60/71 (84.51%), Query Frame = 1
Query:  460 NRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            N IK+FSG A+P L+ EIA ++G+++ + ++++F+DGEI+V+++++VRG D ++VQPTC P N+NLMEL++
Sbjct:    3 NIIKIFSGNAHPQLADEIAAHLGMQVSEADVRKFSDGEIFVEIKKNVRGTDAFIVQPTCTPVNDNLMELVL 73          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_WOLSU (Ribose-phosphate pyrophosphokinase OS=Wolinella succinogenes GN=prs PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.529e-17
Identity = 39/68 (57.35%), Postives = 52/68 (76.47%), Query Frame = 1
Query:  469 KLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            K+F+G+A+P    EIA Y+G+ L    + RF+DGEI +Q+ ESVRG DV++VQPTC P N+NLMELLI
Sbjct:    5 KIFTGSAHPEFGGEIAKYLGIPLSSATVNRFSDGEINIQISESVRGRDVFIVQPTCAPTNDNLMELLI 72          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_BACSU (Ribose-phosphate pyrophosphokinase OS=Bacillus subtilis GN=prs PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.123e-16
Identity = 37/76 (48.68%), Postives = 58/76 (76.32%), Query Frame = 1
Query:  445 NRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            N+  +  +K+FS  +NP L++EIA  +GV+LGK ++ RF+DGE+ + ++ES+RGCD Y++Q T  P NE++MELLI
Sbjct:    3 NQYGDKNLKIFSLNSNPELAKEIADIVGVQLGKCSVTRFSDGEVQINIEESIRGCDCYIIQSTSDPVNEHIMELLI 78          
The following BLAST results are available for this feature:
BLAST of FC930796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
KPRS_STAAC6.599e-1853.95Ribose-phosphate pyrophosphokinase OS=Staphylococc... [more]
KPRS_STAS18.618e-1852.63Ribose-phosphate pyrophosphokinase OS=Staphylococc... [more]
KPRS_STAES1.126e-1753.95Ribose-phosphate pyrophosphokinase OS=Staphylococc... [more]
KPRS_STAEQ1.126e-1753.95Ribose-phosphate pyrophosphokinase OS=Staphylococc... [more]
KPRS_THEMA2.508e-1756.94Ribose-phosphate pyrophosphokinase OS=Thermotoga m... [more]
KPRS_STAHJ2.508e-1752.63Ribose-phosphate pyrophosphokinase OS=Staphylococc... [more]
KPRS_OCEIH4.277e-1752.78Ribose-phosphate pyrophosphokinase OS=Oceanobacill... [more]
KPRS_DESPS5.586e-1749.30Ribose-phosphate pyrophosphokinase OS=Desulfotalea... [more]
KPRS_WOLSU9.529e-1757.35Ribose-phosphate pyrophosphokinase OS=Wolinella su... [more]
KPRS_BACSU2.123e-1648.68Ribose-phosphate pyrophosphokinase OS=Bacillus sub... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34109B05EF PostHarvP1 Citrus clementina cDNA clone C34109B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930796 ID=FC930796; Name=FC930796; organism=Citrus clementina; type=EST; length=674bp
GATGAAAATCCAAAGCGACGAAGCAAAATAGCCAAAGAAGAAGAAAAAGC
AACCGAAGCTCTCTCTGCCTCCTCACCGTCACCACAAAAACAAAAGGAAA
GAAAGAAAGAGAGTGAGTGAGAGAAAGAGAGATCAAAAGGAGAGAGAGCT
GAAACAACACAACAGATAACAATGGCTTCGCTGACGATGCCGCGCCCTTC
ACAATCCACGTCAGCTTCTTGCTCTTCGCCTATCCCCAGTCGCTGTTCTT
TCGGTGACCAAAACCCAACTTTTTCATTCAGTTTCAGGGACTCTCGCTCT
CGGGTTCACGTCTGTAATGCCGCCGCCGTTAGATGTGACATGGCTGAGGC
ATTGAATTTTCCAAATGGGAAGCCTAATATTCCAGTTCTAAACGAACGGA
CGCTGCCCAAATTTTTGGAAACGGCGCGTATGGAGAAAACTGTCAACAGA
ACTACAAATAACAGGATCAAATTGTTCTCTGGCACCGCCAATCCTGCTCT
TTCCCAGGAAATTGCTTGCTACATGGGCGTGGAACTGGGAAAGATCAACA
TAAAGCGATTTGCTGATGGTGAAATTTATGTTCAGCTGCAAGAGAGTGTT
AGAGGATGTGATGTTTATTTGGTGCAGCCCACCTGTCCTCCCGGCAATGA
AAATCTCATGGAGCTTTTGATAAT
back to top