FC930796

Overview
NameFC930796
Unique NameFC930796
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS1_LISWE (Ribose-phosphate pyrophosphokinase 1 OS=Listeria welshimeri GN=prs1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.829e-15
Identity = 37/76 (48.68%), Postives = 56/76 (73.68%), Query Frame = 1
Query:  445 NRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            N   + ++K+FS  +N  L++EIA  +G+ELGK ++  F+DGEI + ++ES+RGC VY++Q T  P N+NLMELLI
Sbjct:    3 NEYFDPKLKIFSLNSNRELAEEIAKEVGIELGKSSVTHFSDGEIQINIEESIRGCHVYVIQSTSNPVNQNLMELLI 78          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS1_LISMO (Ribose-phosphate pyrophosphokinase 1 OS=Listeria monocytogenes GN=prs1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.829e-15
Identity = 37/76 (48.68%), Postives = 56/76 (73.68%), Query Frame = 1
Query:  445 NRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            N   + ++K+FS  +N  L++EIA  +G+ELGK ++  F+DGEI + ++ES+RGC VY++Q T  P N+NLMELLI
Sbjct:    3 NEYFDPKLKIFSLNSNRELAEEIAKEVGIELGKSSVTHFSDGEIQINIEESIRGCHVYVIQSTSNPVNQNLMELLI 78          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS1_LISMF (Ribose-phosphate pyrophosphokinase 1 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=prs1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.829e-15
Identity = 37/76 (48.68%), Postives = 56/76 (73.68%), Query Frame = 1
Query:  445 NRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            N   + ++K+FS  +N  L++EIA  +G+ELGK ++  F+DGEI + ++ES+RGC VY++Q T  P N+NLMELLI
Sbjct:    3 NEYFDPKLKIFSLNSNRELAEEIAKEVGIELGKSSVTHFSDGEIQINIEESIRGCHVYVIQSTSNPVNQNLMELLI 78          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS1_LISIV (Ribose-phosphate pyrophosphokinase 1 OS=Listeria ivanovii GN=prs1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.829e-15
Identity = 37/76 (48.68%), Postives = 56/76 (73.68%), Query Frame = 1
Query:  445 NRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            N   + ++K+FS  +N  L++EIA  +G+ELGK ++  F+DGEI + ++ES+RGC VY++Q T  P N+NLMELLI
Sbjct:    3 NEYFDPKLKIFSLNSNRELAEEIAKEVGIELGKSSVTHFSDGEIQINIEESIRGCHVYVIQSTSNPVNQNLMELLI 78          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS1_LISIN (Ribose-phosphate pyrophosphokinase 1 OS=Listeria innocua GN=prs1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.829e-15
Identity = 37/76 (48.68%), Postives = 56/76 (73.68%), Query Frame = 1
Query:  445 NRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            N   + ++K+FS  +N  L++EIA  +G+ELGK ++  F+DGEI + ++ES+RGC VY++Q T  P N+NLMELLI
Sbjct:    3 NEYFDPKLKIFSLNSNRELAEEIAKEVGIELGKSSVTHFSDGEIQINIEESIRGCHVYVIQSTSNPVNQNLMELLI 78          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_VIBPA (Ribose-phosphate pyrophosphokinase OS=Vibrio parahaemolyticus GN=prs PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.918e-15
Identity = 35/69 (50.72%), Postives = 52/69 (75.36%), Query Frame = 1
Query:  466 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            +KLF+G A P L+Q IA  + + LG  ++ RF+DGE+ VQ+ E+VRG DV+++Q TC P N+NLMEL++
Sbjct:    4 MKLFAGNATPELAQRIADRLYISLGDASVSRFSDGEVAVQINENVRGSDVFIIQSTCAPTNDNLMELVV 72          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_NITEU (Ribose-phosphate pyrophosphokinase OS=Nitrosomonas europaea GN=prs PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.918e-15
Identity = 32/69 (46.38%), Postives = 54/69 (78.26%), Query Frame = 1
Query:  466 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            + +F+GTANP L+ ++  Y+ + LG+ N+ RF+DGE+ V++ E+VRG DV+++Q TC P N++LME+L+
Sbjct:    6 LMVFTGTANPKLAHDVVKYLNINLGRANVGRFSDGEVMVEILENVRGNDVFVLQSTCTPTNDSLMEILV 74          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_VIBVY (Ribose-phosphate pyrophosphokinase OS=Vibrio vulnificus (strain YJ016) GN=prs PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.165e-14
Identity = 35/69 (50.72%), Postives = 51/69 (73.91%), Query Frame = 1
Query:  466 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            +KLF+G A P L+Q IA  + + LG   + RF+DGE+ VQ+ E+VRG DV+++Q TC P N+NLMEL++
Sbjct:    4 MKLFAGNATPELAQRIADRLYISLGDATVSRFSDGEVAVQINENVRGSDVFIIQSTCAPTNDNLMELVV 72          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_VIBVU (Ribose-phosphate pyrophosphokinase OS=Vibrio vulnificus GN=prs PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.165e-14
Identity = 35/69 (50.72%), Postives = 51/69 (73.91%), Query Frame = 1
Query:  466 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            +KLF+G A P L+Q IA  + + LG   + RF+DGE+ VQ+ E+VRG DV+++Q TC P N+NLMEL++
Sbjct:    4 MKLFAGNATPELAQRIADRLYISLGDATVSRFSDGEVAVQINENVRGSDVFIIQSTCAPTNDNLMELVV 72          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_BACCL (Ribose-phosphate pyrophosphokinase OS=Bacillus caldolyticus GN=prs PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.521e-14
Identity = 37/71 (52.11%), Postives = 56/71 (78.87%), Query Frame = 1
Query:  460 NRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            +++KLF+  +N  L++EIA  MG+ELGK ++ RF+DGEI + ++ES+RG DV+++Q T  P NE+LMELLI
Sbjct:    6 HQLKLFALNSNMKLAKEIAEVMGIELGKCSVSRFSDGEIQINIEESIRGDDVFVIQSTSVPVNEHLMELLI 76          
The following BLAST results are available for this feature:
BLAST of FC930796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
KPRS1_LISWE6.829e-1548.68Ribose-phosphate pyrophosphokinase 1 OS=Listeria w... [more]
KPRS1_LISMO6.829e-1548.68Ribose-phosphate pyrophosphokinase 1 OS=Listeria m... [more]
KPRS1_LISMF6.829e-1548.68Ribose-phosphate pyrophosphokinase 1 OS=Listeria m... [more]
KPRS1_LISIV6.829e-1548.68Ribose-phosphate pyrophosphokinase 1 OS=Listeria i... [more]
KPRS1_LISIN6.829e-1548.68Ribose-phosphate pyrophosphokinase 1 OS=Listeria i... [more]
KPRS_VIBPA8.918e-1550.72Ribose-phosphate pyrophosphokinase OS=Vibrio parah... [more]
KPRS_NITEU8.918e-1546.38Ribose-phosphate pyrophosphokinase OS=Nitrosomonas... [more]
KPRS_VIBVY1.165e-1450.72Ribose-phosphate pyrophosphokinase OS=Vibrio vulni... [more]
KPRS_VIBVU1.165e-1450.72Ribose-phosphate pyrophosphokinase OS=Vibrio vulni... [more]
KPRS_BACCL1.521e-1452.11Ribose-phosphate pyrophosphokinase OS=Bacillus cal... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34109B05EF PostHarvP1 Citrus clementina cDNA clone C34109B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930796 ID=FC930796; Name=FC930796; organism=Citrus clementina; type=EST; length=674bp
GATGAAAATCCAAAGCGACGAAGCAAAATAGCCAAAGAAGAAGAAAAAGC
AACCGAAGCTCTCTCTGCCTCCTCACCGTCACCACAAAAACAAAAGGAAA
GAAAGAAAGAGAGTGAGTGAGAGAAAGAGAGATCAAAAGGAGAGAGAGCT
GAAACAACACAACAGATAACAATGGCTTCGCTGACGATGCCGCGCCCTTC
ACAATCCACGTCAGCTTCTTGCTCTTCGCCTATCCCCAGTCGCTGTTCTT
TCGGTGACCAAAACCCAACTTTTTCATTCAGTTTCAGGGACTCTCGCTCT
CGGGTTCACGTCTGTAATGCCGCCGCCGTTAGATGTGACATGGCTGAGGC
ATTGAATTTTCCAAATGGGAAGCCTAATATTCCAGTTCTAAACGAACGGA
CGCTGCCCAAATTTTTGGAAACGGCGCGTATGGAGAAAACTGTCAACAGA
ACTACAAATAACAGGATCAAATTGTTCTCTGGCACCGCCAATCCTGCTCT
TTCCCAGGAAATTGCTTGCTACATGGGCGTGGAACTGGGAAAGATCAACA
TAAAGCGATTTGCTGATGGTGAAATTTATGTTCAGCTGCAAGAGAGTGTT
AGAGGATGTGATGTTTATTTGGTGCAGCCCACCTGTCCTCCCGGCAATGA
AAATCTCATGGAGCTTTTGATAAT
back to top