FC930796

Overview
NameFC930796
Unique NameFC930796
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_VIBCH (Ribose-phosphate pyrophosphokinase OS=Vibrio cholerae GN=prs PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 35/69 (50.72%), Postives = 51/69 (73.91%), Query Frame = 1
Query:  466 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            +KLF+G A P L+Q IA  + + LG   + RF+DGE+ VQ+ E+VRG DV+++Q TC P N+NLMEL++
Sbjct:    4 MKLFAGNAIPELAQRIADRLYISLGDATVSRFSDGEVAVQINENVRGSDVFIIQSTCAPTNDNLMELVV 72          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_SHEON (Ribose-phosphate pyrophosphokinase OS=Shewanella oneidensis GN=prs PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 36/69 (52.17%), Postives = 53/69 (76.81%), Query Frame = 1
Query:  466 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            IKLF+G A P+L+++IA  +  +LG   + RF+DGEI VQ+ E+VRG DV+++Q TC P N+NLMEL++
Sbjct:    4 IKLFAGNATPSLAKKIADRLFCKLGDAVVGRFSDGEISVQINENVRGADVFIIQSTCAPTNDNLMELIV 72          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_PSEAE (Ribose-phosphate pyrophosphokinase OS=Pseudomonas aeruginosa GN=prs PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 32/71 (45.07%), Postives = 55/71 (77.46%), Query Frame = 1
Query:  460 NRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            +++ +F+G ANP L++ +   + + LG +++ +F+DGEI V++ E+VRG DV+L+QPTC P N+NLMEL++
Sbjct:    2 SKMMVFTGNANPDLARRVVRQLHIPLGDVSVGKFSDGEISVEINENVRGKDVFLIQPTCAPTNDNLMELVV 72          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_NEIMB (Ribose-phosphate pyrophosphokinase OS=Neisseria meningitidis serogroup B GN=prs PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 32/68 (47.06%), Postives = 52/68 (76.47%), Query Frame = 1
Query:  466 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELL 669
            + +F+G ANP L+Q +  ++ + LG  ++ +F+DGE+ V+L E+VRG DV+++QPTC P N+NLME+L
Sbjct:    7 LMVFTGNANPELAQRVVRHLDISLGNASVSKFSDGEVAVELLENVRGRDVFILQPTCAPTNDNLMEIL 74          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_NEIMA (Ribose-phosphate pyrophosphokinase OS=Neisseria meningitidis serogroup A GN=prs PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 32/68 (47.06%), Postives = 52/68 (76.47%), Query Frame = 1
Query:  466 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELL 669
            + +F+G ANP L+Q +  ++ + LG  ++ +F+DGE+ V+L E+VRG DV+++QPTC P N+NLME+L
Sbjct:    7 LMVFTGNANPELAQRVVRHLDISLGNASVSKFSDGEVAVELLENVRGRDVFILQPTCAPTNDNLMEIL 74          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_MARMM (Ribose-phosphate pyrophosphokinase OS=Maricaulis maris (strain MCS10) GN=prs PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 39/69 (56.52%), Postives = 53/69 (76.81%), Query Frame = 1
Query:  466 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            +KL SGTANP LS+ IA Y+   L   +I+RFADGEI+V++ E+VRG DV+++Q T  P N++LMELLI
Sbjct:    1 MKLMSGTANPDLSRSIADYLDAPLTASHIERFADGEIFVRIDENVRGEDVFILQSTSRPANDHLMELLI 69          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_HAEIN (Ribose-phosphate pyrophosphokinase OS=Haemophilus influenzae GN=prs PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 35/69 (50.72%), Postives = 51/69 (73.91%), Query Frame = 1
Query:  466 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            IKLF+G A P L++ I+  + + LG   + RF+DGEI VQ+ E+VRG DV+++Q TC P N+NLMEL++
Sbjct:    4 IKLFAGNATPELAKRISERLYISLGDATVARFSDGEIQVQINENVRGADVFIIQSTCAPTNDNLMELVV 72          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_HAEDU (Ribose-phosphate pyrophosphokinase OS=Haemophilus ducreyi GN=prs PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 35/69 (50.72%), Postives = 51/69 (73.91%), Query Frame = 1
Query:  466 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            IKLF+G A P L++ I+  + + LG   + RF+DGEI VQ+ E+VRG DV+++Q TC P N+NLMEL++
Sbjct:    4 IKLFAGNATPELAKRISERLYISLGNATVGRFSDGEIQVQINENVRGSDVFIIQSTCAPTNDNLMELIV 72          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_BRUSU (Ribose-phosphate pyrophosphokinase OS=Brucella suis GN=prs PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 35/69 (50.72%), Postives = 55/69 (79.71%), Query Frame = 1
Query:  466 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            +KLF+G +N  L++ +A Y+ + LGK +++RFAD EI+V++QE+VRG DV+++Q T  P N++LMELLI
Sbjct:    1 MKLFAGNSNRVLAESVAQYLNIPLGKASVRRFADQEIFVEIQENVRGEDVFVLQSTSYPANDHLMELLI 69          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_BRUME (Ribose-phosphate pyrophosphokinase OS=Brucella melitensis GN=prs PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 35/69 (50.72%), Postives = 55/69 (79.71%), Query Frame = 1
Query:  466 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            +KLF+G +N  L++ +A Y+ + LGK +++RFAD EI+V++QE+VRG DV+++Q T  P N++LMELLI
Sbjct:    1 MKLFAGNSNRVLAESVAQYLNIPLGKASVRRFADQEIFVEIQENVRGEDVFVLQSTSYPANDHLMELLI 69          
The following BLAST results are available for this feature:
BLAST of FC930796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
KPRS_VIBCH2.595e-1450.72Ribose-phosphate pyrophosphokinase OS=Vibrio chole... [more]
KPRS_SHEON2.595e-1452.17Ribose-phosphate pyrophosphokinase OS=Shewanella o... [more]
KPRS_PSEAE2.595e-1445.07Ribose-phosphate pyrophosphokinase OS=Pseudomonas ... [more]
KPRS_NEIMB2.595e-1447.06Ribose-phosphate pyrophosphokinase OS=Neisseria me... [more]
KPRS_NEIMA2.595e-1447.06Ribose-phosphate pyrophosphokinase OS=Neisseria me... [more]
KPRS_MARMM2.595e-1456.52Ribose-phosphate pyrophosphokinase OS=Maricaulis m... [more]
KPRS_HAEIN2.595e-1450.72Ribose-phosphate pyrophosphokinase OS=Haemophilus ... [more]
KPRS_HAEDU2.595e-1450.72Ribose-phosphate pyrophosphokinase OS=Haemophilus ... [more]
KPRS_BRUSU2.595e-1450.72Ribose-phosphate pyrophosphokinase OS=Brucella sui... [more]
KPRS_BRUME2.595e-1450.72Ribose-phosphate pyrophosphokinase OS=Brucella mel... [more]

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Properties
Property NameValue
Genbank descriptionC34109B05EF PostHarvP1 Citrus clementina cDNA clone C34109B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930796 ID=FC930796; Name=FC930796; organism=Citrus clementina; type=EST; length=674bp
GATGAAAATCCAAAGCGACGAAGCAAAATAGCCAAAGAAGAAGAAAAAGC
AACCGAAGCTCTCTCTGCCTCCTCACCGTCACCACAAAAACAAAAGGAAA
GAAAGAAAGAGAGTGAGTGAGAGAAAGAGAGATCAAAAGGAGAGAGAGCT
GAAACAACACAACAGATAACAATGGCTTCGCTGACGATGCCGCGCCCTTC
ACAATCCACGTCAGCTTCTTGCTCTTCGCCTATCCCCAGTCGCTGTTCTT
TCGGTGACCAAAACCCAACTTTTTCATTCAGTTTCAGGGACTCTCGCTCT
CGGGTTCACGTCTGTAATGCCGCCGCCGTTAGATGTGACATGGCTGAGGC
ATTGAATTTTCCAAATGGGAAGCCTAATATTCCAGTTCTAAACGAACGGA
CGCTGCCCAAATTTTTGGAAACGGCGCGTATGGAGAAAACTGTCAACAGA
ACTACAAATAACAGGATCAAATTGTTCTCTGGCACCGCCAATCCTGCTCT
TTCCCAGGAAATTGCTTGCTACATGGGCGTGGAACTGGGAAAGATCAACA
TAAAGCGATTTGCTGATGGTGAAATTTATGTTCAGCTGCAAGAGAGTGTT
AGAGGATGTGATGTTTATTTGGTGCAGCCCACCTGTCCTCCCGGCAATGA
AAATCTCATGGAGCTTTTGATAAT
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