FC930796

Overview
NameFC930796
Unique NameFC930796
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_BUCAI (Ribose-phosphate pyrophosphokinase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=prs PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.781e-14
Identity = 35/69 (50.72%), Postives = 53/69 (76.81%), Query Frame = 1
Query:  466 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            +KLFSG + P L++ IA  + + LGK ++ RF+DGEI VQ+ E+VRG DV+++Q TC P N+N+MEL++
Sbjct:    4 MKLFSGNSIPKLAKFIANRLYINLGKASVGRFSDGEISVQINENVRGSDVFIIQSTCSPTNDNIMELVV 72          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_RHILO (Ribose-phosphate pyrophosphokinase OS=Rhizobium loti GN=prs PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.550e-14
Identity = 35/69 (50.72%), Postives = 54/69 (78.26%), Query Frame = 1
Query:  466 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            +KLF+G +N  L++ +A Y+ + LGK  ++RFAD EI+V++QE+VRG DV+++Q T  P N++LMELLI
Sbjct:    1 MKLFAGNSNRVLAEAVARYLNIPLGKATVRRFADQEIFVEIQENVRGEDVFILQSTSFPTNDHLMELLI 69          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_BACHD (Ribose-phosphate pyrophosphokinase OS=Bacillus halodurans GN=prs PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.550e-14
Identity = 33/69 (47.83%), Postives = 52/69 (75.36%), Query Frame = 1
Query:  466 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            +K+F+  +N  L+ EI   +GV +GK ++ RF+DGE+ + ++ES+RGCDV+L+Q T  P NE++MELLI
Sbjct:    9 LKVFTLNSNKGLAYEITERIGVPMGKSSVTRFSDGEVQINIEESIRGCDVFLIQSTAAPANEHIMELLI 77          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_BORPE (Ribose-phosphate pyrophosphokinase OS=Bordetella pertussis GN=prs PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 9.860e-14
Identity = 30/67 (44.78%), Postives = 53/67 (79.10%), Query Frame = 1
Query:  472 LFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            +F+GTAN  L+ ++  ++ + LGK+ + R++DGE+ V++ E+VRG DV+++QPTC P N+NLME+++
Sbjct:    2 IFTGTANTRLAVDVVNHLDMSLGKMTVGRYSDGEVMVEINENVRGKDVFVLQPTCAPTNDNLMEIMV 68          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_PSESM (Ribose-phosphate pyrophosphokinase OS=Pseudomonas syringae pv. tomato GN=prs PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.288e-13
Identity = 30/71 (42.25%), Postives = 54/71 (76.06%), Query Frame = 1
Query:  460 NRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            +++ +F+G ANP L++ +   + + LG +++ +F+DGEI  ++ E+VRG DV+++QPTC P N+NLMEL++
Sbjct:    2 SKMMVFTGNANPDLARRVVRQLHIPLGDVSVGKFSDGEISTEINENVRGKDVFIIQPTCAPTNDNLMELVV 72          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_PSEPK (Ribose-phosphate pyrophosphokinase OS=Pseudomonas putida (strain KT2440) GN=prs PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.288e-13
Identity = 30/71 (42.25%), Postives = 54/71 (76.06%), Query Frame = 1
Query:  460 NRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            +++ +F+G ANP L++ +   + + LG +++ +F+DGEI  ++ E+VRG DV+++QPTC P N+NLMEL++
Sbjct:    2 SKMMVFTGNANPDLARRVVRQLHIPLGDVSVGKFSDGEISTEINENVRGKDVFIIQPTCAPTNDNLMELVV 72          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_YERPE (Ribose-phosphate pyrophosphokinase OS=Yersinia pestis GN=prs PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.682e-13
Identity = 34/69 (49.28%), Postives = 50/69 (72.46%), Query Frame = 1
Query:  466 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            +KLF+G A P L+Q IA  +   LG   + RF+DGE+ VQ+ E+VRG D++++Q TC P N+NLMEL++
Sbjct:    4 MKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQINENVRGGDIFIIQSTCAPTNDNLMELVV 72          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_XYLFT (Ribose-phosphate pyrophosphokinase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=prs PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.682e-13
Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = 1
Query:  466 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            + +FSG AN  L+Q I   +GV +GK  + RF+DGE  V+++ESVR  +V++VQPTC P  ENLMELL+
Sbjct:   10 LMVFSGNANKPLTQSICKELGVRMGKSLVSRFSDGEEQVEIEESVRRQEVFVVQPTCAPSAENLMELLV 78          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_XYLFA (Ribose-phosphate pyrophosphokinase OS=Xylella fastidiosa GN=prs PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.682e-13
Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = 1
Query:  466 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            + +FSG AN  L+Q I   +GV +GK  + RF+DGE  V+++ESVR  +V++VQPTC P  ENLMELL+
Sbjct:   10 LMVFSGNANKPLTQSICKELGVRMGKSLVSRFSDGEEQVEIEESVRRQEVFVVQPTCAPSAENLMELLV 78          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_SALTY (Ribose-phosphate pyrophosphokinase OS=Salmonella typhimurium GN=prs PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.682e-13
Identity = 34/69 (49.28%), Postives = 50/69 (72.46%), Query Frame = 1
Query:  466 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            +KLF+G A P L+Q IA  +   LG   + RF+DGE+ VQ+ E+VRG D++++Q TC P N+NLMEL++
Sbjct:    4 MKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQINENVRGGDIFIIQSTCAPTNDNLMELVV 72          
The following BLAST results are available for this feature:
BLAST of FC930796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
KPRS_BUCAI5.781e-1450.72Ribose-phosphate pyrophosphokinase OS=Buchnera aph... [more]
KPRS_RHILO7.550e-1450.72Ribose-phosphate pyrophosphokinase OS=Rhizobium lo... [more]
KPRS_BACHD7.550e-1447.83Ribose-phosphate pyrophosphokinase OS=Bacillus hal... [more]
KPRS_BORPE9.860e-1444.78Ribose-phosphate pyrophosphokinase OS=Bordetella p... [more]
KPRS_PSESM1.288e-1342.25Ribose-phosphate pyrophosphokinase OS=Pseudomonas ... [more]
KPRS_PSEPK1.288e-1342.25Ribose-phosphate pyrophosphokinase OS=Pseudomonas ... [more]
KPRS_YERPE1.682e-1349.28Ribose-phosphate pyrophosphokinase OS=Yersinia pes... [more]
KPRS_XYLFT1.682e-1352.17Ribose-phosphate pyrophosphokinase OS=Xylella fast... [more]
KPRS_XYLFA1.682e-1352.17Ribose-phosphate pyrophosphokinase OS=Xylella fast... [more]
KPRS_SALTY1.682e-1349.28Ribose-phosphate pyrophosphokinase OS=Salmonella t... [more]

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Properties
Property NameValue
Genbank descriptionC34109B05EF PostHarvP1 Citrus clementina cDNA clone C34109B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930796 ID=FC930796; Name=FC930796; organism=Citrus clementina; type=EST; length=674bp
GATGAAAATCCAAAGCGACGAAGCAAAATAGCCAAAGAAGAAGAAAAAGC
AACCGAAGCTCTCTCTGCCTCCTCACCGTCACCACAAAAACAAAAGGAAA
GAAAGAAAGAGAGTGAGTGAGAGAAAGAGAGATCAAAAGGAGAGAGAGCT
GAAACAACACAACAGATAACAATGGCTTCGCTGACGATGCCGCGCCCTTC
ACAATCCACGTCAGCTTCTTGCTCTTCGCCTATCCCCAGTCGCTGTTCTT
TCGGTGACCAAAACCCAACTTTTTCATTCAGTTTCAGGGACTCTCGCTCT
CGGGTTCACGTCTGTAATGCCGCCGCCGTTAGATGTGACATGGCTGAGGC
ATTGAATTTTCCAAATGGGAAGCCTAATATTCCAGTTCTAAACGAACGGA
CGCTGCCCAAATTTTTGGAAACGGCGCGTATGGAGAAAACTGTCAACAGA
ACTACAAATAACAGGATCAAATTGTTCTCTGGCACCGCCAATCCTGCTCT
TTCCCAGGAAATTGCTTGCTACATGGGCGTGGAACTGGGAAAGATCAACA
TAAAGCGATTTGCTGATGGTGAAATTTATGTTCAGCTGCAAGAGAGTGTT
AGAGGATGTGATGTTTATTTGGTGCAGCCCACCTGTCCTCCCGGCAATGA
AAATCTCATGGAGCTTTTGATAAT
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