FC930799

Overview
NameFC930799
Unique NameFC930799
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930799 vs. ExPASy Swiss-Prot
Match: CSN3_XENLA (COP9 signalosome complex subunit 3 OS=Xenopus laevis GN=cops3 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.003e-33
Identity = 85/237 (35.86%), Postives = 128/237 (54.01%), Query Frame = 1
Query:    1 TALKDYLKAGEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL------PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNL 693
            T L + +    +LL    + L + L  LD  +HSLG L  L    +   +     TL   +  FI++C+ E IRY  + F  +C +  + ++  + P+RG+  +  AI K+Q +   LT++H +  QL LLAKC+K  L+ L+ D+ +I         + F  Y YYGGMI+ G K F +A+      +T P  +++ I +EAYKKYILVSLI HG+    LPKYTS    R +K L
Sbjct:   22 TQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVLF-VKFSMPSIPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGICVIRQAIDKMQMNANQLTSIHGDLCQLSLLAKCFKPALAYLDVDMMDICKENGAYDAKPFLCYYYYGGMIYTGLKNFERAMYFYEQAITTPAMAVSHIMLEAYKKYILVSLILHGKVQQ-LPKYTSQVVGRFIKPL 256          
BLAST of FC930799 vs. ExPASy Swiss-Prot
Match: CSN3_DICDI (COP9 signalosome complex subunit 3 OS=Dictyostelium discoideum GN=csn3 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.901e-32
Identity = 87/236 (36.86%), Postives = 128/236 (54.24%), Query Frame = 1
Query:    7 LKDYLKAGEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSS--TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLP------RDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKN 690
            LK+ LK  E L R +   L + L  LD   HSLG L  L+     S   +  +  +     F  +C+ EQ+R  P +   + K Y + +  L+ PIRGV  +  A+  +  +  T  LT +H +FLQLC+L+KCY   L ++E +I  IN        +D   Y YY G+IF   K+++KA+E    V+TAP S+++AI VEAYKKY++V LI  G      PK T +  QRN+K+
Sbjct:   16 LKNLLKYEEQLER-QHVSLDNILGALDVRNHSLGQLLVLKA--KGSDQGKNRSVFIDQCNNFFRNCNVEQVRLAPAQLSQLSKFYTEALYELKQPIRGVAVLKDALNILSDNKPTTTLTPIHTDFLQLCILSKCYHQALPLIESNITHINPEQSSIAIKDILCYFYYSGIIFTAFKKYKKAIEAFKFVITAPASALSAITVEAYKKYLIVYLIQFGSVQH-FPKCTPAVVQRNIKS 247          
BLAST of FC930799 vs. ExPASy Swiss-Prot
Match: CSN3_DROME (COP9 signalosome complex subunit 3 OS=Drosophila melanogaster GN=CSN3 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.112e-19
Identity = 71/240 (29.58%), Postives = 112/240 (46.67%), Query Frame = 1
Query:    7 LKDYLKAGEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANT-LVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---------------------NLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYT 660
            L + L     LL    + L + L+ LD  +HSLG LY L   ++ + T       L+ ++  F+   + EQ+RY    F   C  + + V+     I G+  +  AI +I+     LT +H +   L L AK +   L  L+ DI +I                     N  + F LY YYGGMI+   K + +AL      +T P  +++ I +EAYKK+++VSLI  G+  + +PK T
Sbjct:   24 LAEELPESLSLLARNWSILDNVLETLDMQQHSLGVLYVLLAKLHSASTANPEPVQLIQLMRDFVQRNNNEQLRYAVCAFYETCHLFTEFVVQKNLSILGIRIISRAIDQIRQLETQLTPIHADLCLLSLKAKNFSVVLPYLDADITDISTVAAECKTQQQQQSQHADANNDAKYFLLYFYYGGMIYTAVKNYERALYFFEVCITTPAMAMSHIMLEAYKKFLMVSLIVEGKI-AYIPKNT 262          
The following BLAST results are available for this feature:
BLAST of FC930799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CSN3_XENLA5.003e-3335.86COP9 signalosome complex subunit 3 OS=Xenopus laev... [more]
CSN3_DICDI1.901e-3236.86COP9 signalosome complex subunit 3 OS=Dictyosteliu... [more]
CSN3_DROME4.112e-1929.58COP9 signalosome complex subunit 3 OS=Drosophila m... [more]

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Properties
Property NameValue
Genbank descriptionC34109B08EF PostHarvP1 Citrus clementina cDNA clone C34109B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930799 ID=FC930799; Name=FC930799; organism=Citrus clementina; type=EST; length=736bp
ACAGCCCTTAAGGATTACTTGAAAGCAGGTGAAGATTTGCTCCGCTCTGA
GTCGACTCGCTTGCTGTCGTTTCTCGACCAGCTCGACCCCTCCAAGCACT
CCCTCGGTTACCTTTATTTCTTAGAGCCATGTATGTACTGTTCGATAACG
AAAGAGCGAGCAAACACACTGGTTCCAATCATTGCTCGATTCATTACTTC
TTGTTCTGCGGAGCAGATTCGTTACGTGCCAGAGAAGTTCATCAATGTTT
GTAAGAGGTATAAGGATCAAGTGTTGCTGCTTGAAGCACCCATCAGAGGG
GTGGGTCCAATGCTGACCGCTATCCGCAAGATTCAGTCCTCCACTGAGCA
TTTGACCACTTTGCATCCAGAGTTTCTTCAACTTTGTCTATTGGCTAAGT
GCTATAAAGCTGGTCTTTCTGTTTTAGAGGATGACATTTATGAGATTAAT
CTGCCAAGGGACTTTTTTCTCTATTGTTATTATGGTGGGATGATATTCAT
CGGGCAAAAGCGCTTTCGGAAAGCTTTGGAGCTTCTACACAATGTCGTGA
CTGCTCCTATGTCCAGTATCAATGCTATAGCTGTTGAAGCATACAAAAAA
TATATATTAGTTTCCCTCATTCACCATGGACAGTTCTCTTCCACCCTCCC
TAAGTACACTTCTTCAGCAGCTCAGAGGAATCTAAAGAATTTAGTCAGCC
TTACATGGAATTGGTTAATACCNTACATACTGGCAA
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