FC930801

Overview
NameFC930801
Unique NameFC930801
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930801 vs. ExPASy Swiss-Prot
Match: EF1G_SCHPO (Elongation factor 1-gamma OS=Schizosaccharomyces pombe GN=tef3 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.199e-16
Identity = 59/174 (33.91%), Postives = 87/174 (50.00%), Query Frame = 1
Query:  160 AEYTGVNVELVKNFEMGVTNKTPEFLKMNPIGKVPVLETPDG-PIFESNAIARYVARLKAVNPLLGSSLIDSAHIEQWIDFSSLEIDTNILRWFIPRVGFAVYLPQAEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADIIMTCNLTLGFSRILTKSFTSEFPHVERYFWTM 678
            A   GV VE V   ++   N   +     P+ K+PV    DG P+ E+ AIA Y+A L     L G++  + A + Q+  F++ E+         PRV  A Y  QA +             +  LAS TYLVG  +TLADI  TC L  G + +LTKS+ +++ H+ RY+ T+
Sbjct:   22 AAVAGVEVEHV---DVQPHNFPADLAAKFPLQKMPVFVGKDGFPLSETLAIAFYLASLNKTRALNGTTAEEKAKVLQYCSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTYLVGSRLTLADIFFTCFLKFGATYVLTKSYLAKYTHIYRYYQTI 192          
BLAST of FC930801 vs. ExPASy Swiss-Prot
Match: GSTF3_ARATH (Glutathione S-transferase ERD13 OS=Arabidopsis thaliana GN=ERD13 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.321e-12
Identity = 52/158 (32.91%), Postives = 79/158 (50.00%), Query Frame = 1
Query:  145 KALITAEYTGVNVELVKNFEMGVTNKTPEFLKMNPIGKVPVLETPDGPIFESNAIARYVA-RLKAVNP-LLGSSLIDSAHIEQWIDFSS-------LEIDTNILRWFIPRVGFAV---YLPQAEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADI 582
            +A++T    GV+ E V    M    + PE+L + P GK+PVL   D  IFES AI RY+A + ++  P LLG ++ +   +EQW+D  +       L +  NI+  F P +GF      + ++EE                L+ N YL G  V+LAD+
Sbjct:   15 RAVVTLVEKGVSFETVNVDLMKGEQRQPEYLAIQPFGKIPVLVDGDYKIFESRAIMRYIAEKYRSQGPDLLGKTIEERGQVEQWLDVEATSYHPPLLALTLNIV--FAPLMGFPADEKVIKESEE----KLAEVLDVYEAQLSKNEYLAGDFVSLADL 166          
BLAST of FC930801 vs. ExPASy Swiss-Prot
Match: GSTF4_MAIZE (Glutathione S-transferase 4 OS=Zea mays GN=GST4 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 54/184 (29.35%), Postives = 85/184 (46.20%), Query Frame = 1
Query:  145 KALITAEYTGVNVELVKNFEMGVTNKTPEFLKMNPIGKVPVLETPDGPIFESNAIARYVARLKAVNPLLGSSLIDSAHIEQWIDFSSLEIDTNILRWFIPRVGFAVYLPQAE-----EXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADI----IMTCNLTLGFSRILTKSFTSEFPHVERYF 669
            +AL+  E  GV+ ELV        ++ PE L  NP GKVPVLE  D  +FES AIAR+V R      L G  L  +A ++ W++  + ++    +   +  V FA +L +       +                LA+ TYL G  ++LAD+    IM C +   ++ ++        PHV  ++
Sbjct:   19 RALLALEEAGVDYELVPMSRQDGDHRRPEHLARNPFGKVPVLEDGDLTLFESRAIARHVLRKHKPELLGGGRLEQTAMVDVWLEVEAHQLSPPAIAIVVECV-FAPFLGRERNQAVVDENVEKLKKVLEVYEARLATCTYLAGDFLSLADLSPFTIMHCLMATEYAALV-----HALPHVSAWW 196          
BLAST of FC930801 vs. ExPASy Swiss-Prot
Match: EF1G_TRYCR (Elongation factor 1-gamma OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 53/165 (32.12%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  100 MAMVLHAGNTNKNA--FKALITAEYTGVNVELVKNFEMGVTNKTPEFLK-MNPIGKVPVLETPDGPIFESNAIARYVARL-KAVNPLLGSSLIDSAHIEQWIDFSSLEIDTNILRWFIPRVGFAVYLPQAEEXXXXXXXXXXXXXNTHLASNTYLVGHSVTLADI 582
            M++ L +G   +NA   K L  A    V V L K  E G  N+T E+ +  +P G+ PVL+T +G +FESNAI R++ARL ++   L G + ++ + ++ W+DFS+ E+D        P V  A                        L + T+LVG  +T+AD+
Sbjct:    1 MSLTLWSGVNPENARTHKLLAAAALANVAVTL-KACEYGRENETAEYCRNCSPCGRYPVLQTEEGCVFESNAILRHIARLDRSGGFLYGRTPLEGSQVDMWLDFSATELDAA----SEPFVHHAFRGEPLPANAMDRVHEVLRALEAWLETRTFLVGERMTVADV 160          
The following BLAST results are available for this feature:
BLAST of FC930801 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
EF1G_SCHPO2.199e-1633.91Elongation factor 1-gamma OS=Schizosaccharomyces p... [more]
GSTF3_ARATH7.321e-1232.91Glutathione S-transferase ERD13 OS=Arabidopsis tha... [more]
GSTF4_MAIZE1.249e-1129.35Glutathione S-transferase 4 OS=Zea mays GN=GST4 PE... [more]
EF1G_TRYCR1.249e-1132.12Elongation factor 1-gamma OS=Trypanosoma cruzi PE=... [more]

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Properties
Property NameValue
Genbank descriptionC34109B10EF PostHarvP1 Citrus clementina cDNA clone C34109B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930801 ID=FC930801; Name=FC930801; organism=Citrus clementina; type=EST; length=684bp
GACACTCACTAAACCTCGCAAGACCAAGCCGTTGACACAATCGCTCTGAT
TCGCTGTTTGATCTTGGGTTGTTAACTGAAGTAAAATCTTTCTGAAGCAA
TGGCTATGGTCTTGCATGCAGGGAACACCAATAAAAATGCTTTTAAAGCA
CTTATTACTGCAGAGTACACTGGGGTAAATGTTGAATTGGTCAAGAATTT
TGAGATGGGTGTAACAAACAAAACTCCTGAATTTCTTAAGATGAATCCCA
TTGGAAAGGTTCCTGTGTTGGAAACACCTGATGGACCCATCTTCGAGAGT
AATGCCATTGCACGATATGTTGCACGCTTGAAAGCTGTCAACCCACTGTT
GGGCTCGTCTTTAATTGATTCTGCTCATATTGAGCAGTGGATTGATTTCT
CATCATTAGAAATTGACACCAATATTTTGCGTTGGTTTATACCAAGAGTT
GGTTTCGCGGTGTACCTTCCTCAGGCTGAGGAAGCTGCAATTGCTTCTTT
GAAGAGAGCTCTAGCTGCATTGAATACACATCTCGCTTCCAACACTTACT
TAGTTGGCCATTCAGTGACTTTGGCTGATATCATTATGACATGTAACTTG
ACGTTGGGATTCAGTCGGATCCTGACCAAGAGCTTTACATCAGAATTCCC
TCACGTTGAGAGATACTTTTGGACAATGGTTAAC
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