FC930806

Overview
NameFC930806
Unique NameFC930806
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13A_PONAB (60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3)

HSP 1 Score: 218.394 bits (555), Expect = 2.938e-56
Identity = 105/183 (57.38%), Postives = 135/183 (73.77%), Query Frame = 2
Query:  107 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLKQLRAKAEKVAEENL 655
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PSRGP HFRAP++IFWRTVRGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRLA EVGW Y      LE+KRKE++++ Y +KKQL +LR +AEK  E+ +
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLVRLRKQAEKNVEKKI 189          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13A_RAT (60S ribosomal protein L13a OS=Rattus norvegicus GN=Rpl13a PE=1 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 3.837e-56
Identity = 105/185 (56.76%), Postives = 135/185 (72.97%), Query Frame = 2
Query:  107 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLKQLRAKAEKVAEENLAR 661
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PSRGP HFRAP++IFWRTVRGM+PHKT             +G+P PYDK KRMV+P ALKV+RL+   K+  LGRLA EVGW Y      LE+KRKE++++ Y +KKQL +LR +AEK  E+ + +
Sbjct:    7 LVLDGRSHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLLRLRKQAEKNVEKKICK 191          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13A_MOUSE (60S ribosomal protein L13a OS=Mus musculus GN=Rpl13a PE=1 SV=4)

HSP 1 Score: 216.083 bits (549), Expect = 1.458e-55
Identity = 104/185 (56.22%), Postives = 135/185 (72.97%), Query Frame = 2
Query:  107 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLKQLRAKAEKVAEENLAR 661
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PSRGP HFRAP++IFWRTVRGM+PHKT             +G+P PYDK KRMV+P ALKV+RL+   K+  LGRLA EVGW Y      LE+KRKE++++ Y +KKQ+ +LR +AEK  E+ + +
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKMHYRKKKQILRLRKQAEKNVEKKICK 191          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13A_SALTR (60S ribosomal protein L13a (Fragment) OS=Salmo trutta GN=rpl13a PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.734e-52
Identity = 101/183 (55.19%), Postives = 131/183 (71.58%), Query Frame = 2
Query:  131 MLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLKQLRAKAEKVAEENLARNWTSLL 679
            +LGRLA+IVA E+L G KVV VRCE I +SG   R K+KY+ FLRKRMNT PSRGP HFRAP++IFWRTVRGM+PHKT            ++GVP PYDK KRMV+P ALK++RL+   K+ LLGRLA EVGW Y      LE+KRKE++++ Y +KK + +L   AEK  E  +++ +T++L
Sbjct:    1 LLGRLAAIVANEVLLGHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGVPPPYDKRKRMVVPAALKIVRLKPTRKFALLGRLAHEVGWKYQAITATLEEKRKEKAKIRYAKKKTVTKLSKLAEKNVESTISK-YTAVL 182          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13A_DROME (60S ribosomal protein L13a OS=Drosophila melanogaster GN=RpL13A PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.780e-52
Identity = 95/192 (49.48%), Postives = 135/192 (70.31%), Query Frame = 2
Query:   86 SGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLKQLRAKAEKVAEENLAR 661
            +G+  + VV+D R H+LGRLAS+VAK LL G KV  VRCEE+ +SG   R K+K++ +LRKR N  P+RGP HFRAP++IF++ VRGMIPHKT            ++G+P+PYDK +R+V+P A++VL L+   KYC +GRL+ EVGW+Y D I+ LE+KRK + +V  +  ++LK+L  K    A EN+A+
Sbjct:    2 TGLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIKSLERKRKAKLRVTLKHNRELKKLTVK----ARENIAK 189          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13A_SPOFR (60S ribosomal protein L13a OS=Spodoptera frugiperda GN=RpL13A PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.277e-51
Identity = 98/188 (52.13%), Postives = 129/188 (68.62%), Query Frame = 2
Query:   86 SGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLKQL-RAKAEKVAE 646
            +G   K +V+D R H+LGRLA+++AK LL G KVV VRCE+I +SG   R K+K+M FLRKR N  P+RGP HFRAP+KI W+TVRGMIPHKT            Y+G P PYD  +R+V+P AL+V  L+ G KYC +GRL+ EVGW Y D +R+LE KRK +S      +K+LK++ +   EKVA+
Sbjct:    2 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKSALRRLRAYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLENKRKVKSVKLMAYEKKLKRITKESGEKVAK 189          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL16_NEUCR (60S ribosomal protein L16 OS=Neurospora crassa GN=rpl-16 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.668e-51
Identity = 99/183 (54.10%), Postives = 129/183 (70.49%), Query Frame = 2
Query:  107 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRG-PIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLKQLRAKAEKVAEEN 652
            VV+D + H+LGRLASIVAK+LLNGQK+V VRCE + +SG   R K+KY  +LRK     P+RG P HFRAP++IF++ VRGMIPHKT            +EGVP PYDK K+MV+P AL+VLRLQ G K+C +GRL+SEVGW Y D +  LE++RK +    YERKK   +  ++A+K A+ N
Sbjct:    8 VVIDGKGHLLGRLASIVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHSYLRKMTRYNPTRGGPFHFRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKKMVVPQALRVLRLQPGRKFCTVGRLSSEVGWKYEDVVSRLEERRKAKGAAYYERKKVAARQLSEAKKSAKVN 190          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13A_CHOPR (60S ribosomal protein L13a OS=Choristoneura parallela GN=RpL13A PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.279e-51
Identity = 99/188 (52.66%), Postives = 128/188 (68.09%), Query Frame = 2
Query:   86 SGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERS--QVAYER--KKQLKQLRAKAEK 637
            +G   K +V+D R H+LGRLA+++AK LL G KVV VRCE++ +SG   R K+K+M FLRKR N  P+RGP HFRAP+KI W+TVRGMIPHKT            Y+G P PYD  +R+V+P AL+V  L+ G KYC +GRL+ EVGW Y + +R+LE KRK ++  +VAYER  KK  K   AK  K
Sbjct:    2 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQLNISGNFFRNKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKDALRRLRSYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEVGWKYREVVRKLEDKRKFKAVHKVAYERKLKKITKDAGAKVSK 189          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL16A_SCHPO (60S ribosomal protein L16-A OS=Schizosaccharomyces pombe GN=rpl16a PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.109e-50
Identity = 100/188 (53.19%), Postives = 128/188 (68.09%), Query Frame = 2
Query:  101 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERK--KQLKQLRAKAEKVAEENLA 658
            K VV+DA+ H+LGRLAS+VAK+LL GQKVV VRCEE+ +SG   R K+KY+ +LRK     PSRG  HFRAP++IF + VRGM+PHKT             EG+P P+DK KR+V+P AL+VLRL+ G KYC +GRL+SEVGW Y D + +LE++RK +S   Y+ K  KQ K   AKA       LA
Sbjct:    6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSAAFYQAKLAKQKKIASAKAASSVNGKLA 193          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL16B_SCHPO (60S ribosomal protein L16-B OS=Schizosaccharomyces pombe GN=rpl16b PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.154e-50
Identity = 98/189 (51.85%), Postives = 129/189 (68.25%), Query Frame = 2
Query:  101 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERK--KQLKQLRAKAEKVAEENLAR 661
            K VV+DA+ H+LGRLAS+VAK+LL GQKVV VRCEE+ +SG   R K+KY+ +LRK     PSRG  HFRAP++IF + VRGM+PHKT             EG+P P+DK KR+V+P AL+VLRL+ G KYC +GRL+SEVGW Y D + +LE++RK +S   Y+ K  KQ K   AK      + L++
Sbjct:    6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSAAFYQAKLAKQKKIASAKEASPVNQKLSQ 194          
The following BLAST results are available for this feature:
BLAST of FC930806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
RL13A_PONAB2.938e-5657.3860S ribosomal protein L13a OS=Pongo abelii GN=RPL1... [more]
RL13A_RAT3.837e-5656.7660S ribosomal protein L13a OS=Rattus norvegicus GN... [more]
RL13A_MOUSE1.458e-5556.2260S ribosomal protein L13a OS=Mus musculus GN=Rpl1... [more]
RL13A_SALTR5.734e-5255.1960S ribosomal protein L13a (Fragment) OS=Salmo tru... [more]
RL13A_DROME9.780e-5249.4860S ribosomal protein L13a OS=Drosophila melanogas... [more]
RL13A_SPOFR1.277e-5152.1360S ribosomal protein L13a OS=Spodoptera frugiperd... [more]
RL16_NEUCR1.668e-5154.1060S ribosomal protein L16 OS=Neurospora crassa GN=... [more]
RL13A_CHOPR8.279e-5152.6660S ribosomal protein L13a OS=Choristoneura parall... [more]
RL16A_SCHPO4.109e-5053.1960S ribosomal protein L16-A OS=Schizosaccharomyces... [more]
RL16B_SCHPO9.154e-5051.8560S ribosomal protein L16-B OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionC34109C03EF PostHarvP1 Citrus clementina cDNA clone C34109C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930806 ID=FC930806; Name=FC930806; organism=Citrus clementina; type=EST; length=699bp
GGAGAGAGGGAGAGAGAGAGAGCAGAAGAGGGAGAGAAAAAGCCAACAAA
ATAGAGAGAGAGGAACCCTAATAATGGTGTCGGGATCGGGAATCTGCGCG
AAGCGAGTGGTGGTGGACGCACGCCACCACATGCTGGGGCGGCTGGCGTC
GATCGTGGCCAAGGAGCTCCTCAACGGACAGAAAGTCGTCGCGGTCCGCT
GCGAAGAGATTTGCATGTCCGGCGGCCTCGTCCGCCAGAAAGTGAAGTAC
ATGCGGTTCCTTCGCAAGCGCATGAACACCAAGCCTTCTCGCGGTCCCAT
CCACTTCCGCGCCCCTGCCAAGATCTTCTGGCGCACCGTCCGCGGGATGA
TACCGCATAAGACCAAGCGTGGAGCTGCAGCACTTGCTCGATTGAAGGCA
TATGAAGGGGTCCCTGCACCTTATGACAAGGTGAAGAGAATGGTTATCCC
CGACGCTCTCAAGGTTTTGAGGCTTCAGAAGGGTCACAAGTACTGCTTGT
TAGGTCGCCTGGCATCTGAGGTTGGATGGAATTATTATGACACCATCAGG
GAGCTTGAGAAGAAGAGAAAGGAGAGGTCACAGGTGGCTTATGAGAGGAA
GAAGCAGCTCAAACAACTTAGGGCTAAGGCTGAGAAGGTTGCAGAAGAGA
ACTTGGCTCGCAATTGGACATCCTTGCTCCTGTCAATATTGATCAGTTA
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