FC930806
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13A_PONAB (60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3) HSP 1 Score: 218.394 bits (555), Expect = 2.938e-56 Identity = 105/183 (57.38%), Postives = 135/183 (73.77%), Query Frame = 2 Query: 107 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLKQLRAKAEKVAEENL 655 +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG R K+KY+ FLRKRMNT PSRGP HFRAP++IFWRTVRGM+PHKT ++G+P PYDK KRMV+P ALKV+RL+ K+ LGRLA EVGW Y LE+KRKE++++ Y +KKQL +LR +AEK E+ + Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLVRLRKQAEKNVEKKI 189
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13A_RAT (60S ribosomal protein L13a OS=Rattus norvegicus GN=Rpl13a PE=1 SV=2) HSP 1 Score: 218.009 bits (554), Expect = 3.837e-56 Identity = 105/185 (56.76%), Postives = 135/185 (72.97%), Query Frame = 2 Query: 107 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLKQLRAKAEKVAEENLAR 661 +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG R K+KY+ FLRKRMNT PSRGP HFRAP++IFWRTVRGM+PHKT +G+P PYDK KRMV+P ALKV+RL+ K+ LGRLA EVGW Y LE+KRKE++++ Y +KKQL +LR +AEK E+ + + Sbjct: 7 LVLDGRSHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLLRLRKQAEKNVEKKICK 191
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13A_MOUSE (60S ribosomal protein L13a OS=Mus musculus GN=Rpl13a PE=1 SV=4) HSP 1 Score: 216.083 bits (549), Expect = 1.458e-55 Identity = 104/185 (56.22%), Postives = 135/185 (72.97%), Query Frame = 2 Query: 107 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLKQLRAKAEKVAEENLAR 661 +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG R K+KY+ FLRKRMNT PSRGP HFRAP++IFWRTVRGM+PHKT +G+P PYDK KRMV+P ALKV+RL+ K+ LGRLA EVGW Y LE+KRKE++++ Y +KKQ+ +LR +AEK E+ + + Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKMHYRKKKQILRLRKQAEKNVEKKICK 191
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13A_SALTR (60S ribosomal protein L13a (Fragment) OS=Salmo trutta GN=rpl13a PE=2 SV=1) HSP 1 Score: 204.142 bits (518), Expect = 5.734e-52 Identity = 101/183 (55.19%), Postives = 131/183 (71.58%), Query Frame = 2 Query: 131 MLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLKQLRAKAEKVAEENLARNWTSLL 679 +LGRLA+IVA E+L G KVV VRCE I +SG R K+KY+ FLRKRMNT PSRGP HFRAP++IFWRTVRGM+PHKT ++GVP PYDK KRMV+P ALK++RL+ K+ LLGRLA EVGW Y LE+KRKE++++ Y +KK + +L AEK E +++ +T++L Sbjct: 1 LLGRLAAIVANEVLLGHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGVPPPYDKRKRMVVPAALKIVRLKPTRKFALLGRLAHEVGWKYQAITATLEEKRKEKAKIRYAKKKTVTKLSKLAEKNVESTISK-YTAVL 182
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13A_DROME (60S ribosomal protein L13a OS=Drosophila melanogaster GN=RpL13A PE=1 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 9.780e-52 Identity = 95/192 (49.48%), Postives = 135/192 (70.31%), Query Frame = 2 Query: 86 SGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLKQLRAKAEKVAEENLAR 661 +G+ + VV+D R H+LGRLAS+VAK LL G KV VRCEE+ +SG R K+K++ +LRKR N P+RGP HFRAP++IF++ VRGMIPHKT ++G+P+PYDK +R+V+P A++VL L+ KYC +GRL+ EVGW+Y D I+ LE+KRK + +V + ++LK+L K A EN+A+ Sbjct: 2 TGLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIKSLERKRKAKLRVTLKHNRELKKLTVK----ARENIAK 189
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13A_SPOFR (60S ribosomal protein L13a OS=Spodoptera frugiperda GN=RpL13A PE=2 SV=1) HSP 1 Score: 202.986 bits (515), Expect = 1.277e-51 Identity = 98/188 (52.13%), Postives = 129/188 (68.62%), Query Frame = 2 Query: 86 SGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLKQL-RAKAEKVAE 646 +G K +V+D R H+LGRLA+++AK LL G KVV VRCE+I +SG R K+K+M FLRKR N P+RGP HFRAP+KI W+TVRGMIPHKT Y+G P PYD +R+V+P AL+V L+ G KYC +GRL+ EVGW Y D +R+LE KRK +S +K+LK++ + EKVA+ Sbjct: 2 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKSALRRLRAYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLENKRKVKSVKLMAYEKKLKRITKESGEKVAK 189
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL16_NEUCR (60S ribosomal protein L16 OS=Neurospora crassa GN=rpl-16 PE=3 SV=1) HSP 1 Score: 202.601 bits (514), Expect = 1.668e-51 Identity = 99/183 (54.10%), Postives = 129/183 (70.49%), Query Frame = 2 Query: 107 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRG-PIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLKQLRAKAEKVAEEN 652 VV+D + H+LGRLASIVAK+LLNGQK+V VRCE + +SG R K+KY +LRK P+RG P HFRAP++IF++ VRGMIPHKT +EGVP PYDK K+MV+P AL+VLRLQ G K+C +GRL+SEVGW Y D + LE++RK + YERKK + ++A+K A+ N Sbjct: 8 VVIDGKGHLLGRLASIVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHSYLRKMTRYNPTRGGPFHFRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKKMVVPQALRVLRLQPGRKFCTVGRLSSEVGWKYEDVVSRLEERRKAKGAAYYERKKVAARQLSEAKKSAKVN 190
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13A_CHOPR (60S ribosomal protein L13a OS=Choristoneura parallela GN=RpL13A PE=2 SV=1) HSP 1 Score: 200.29 bits (508), Expect = 8.279e-51 Identity = 99/188 (52.66%), Postives = 128/188 (68.09%), Query Frame = 2 Query: 86 SGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERS--QVAYER--KKQLKQLRAKAEK 637 +G K +V+D R H+LGRLA+++AK LL G KVV VRCE++ +SG R K+K+M FLRKR N P+RGP HFRAP+KI W+TVRGMIPHKT Y+G P PYD +R+V+P AL+V L+ G KYC +GRL+ EVGW Y + +R+LE KRK ++ +VAYER KK K AK K Sbjct: 2 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQLNISGNFFRNKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKDALRRLRSYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEVGWKYREVVRKLEDKRKFKAVHKVAYERKLKKITKDAGAKVSK 189
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL16A_SCHPO (60S ribosomal protein L16-A OS=Schizosaccharomyces pombe GN=rpl16a PE=1 SV=1) HSP 1 Score: 197.978 bits (502), Expect = 4.109e-50 Identity = 100/188 (53.19%), Postives = 128/188 (68.09%), Query Frame = 2 Query: 101 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERK--KQLKQLRAKAEKVAEENLA 658 K VV+DA+ H+LGRLAS+VAK+LL GQKVV VRCEE+ +SG R K+KY+ +LRK PSRG HFRAP++IF + VRGM+PHKT EG+P P+DK KR+V+P AL+VLRL+ G KYC +GRL+SEVGW Y D + +LE++RK +S Y+ K KQ K AKA LA Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSAAFYQAKLAKQKKIASAKAASSVNGKLA 193
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL16B_SCHPO (60S ribosomal protein L16-B OS=Schizosaccharomyces pombe GN=rpl16b PE=1 SV=1) HSP 1 Score: 196.823 bits (499), Expect = 9.154e-50 Identity = 98/189 (51.85%), Postives = 129/189 (68.25%), Query Frame = 2 Query: 101 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERK--KQLKQLRAKAEKVAEENLAR 661 K VV+DA+ H+LGRLAS+VAK+LL GQKVV VRCEE+ +SG R K+KY+ +LRK PSRG HFRAP++IF + VRGM+PHKT EG+P P+DK KR+V+P AL+VLRL+ G KYC +GRL+SEVGW Y D + +LE++RK +S Y+ K KQ K AK + L++ Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSAAFYQAKLAKQKKIASAKEASPVNQKLSQ 194 The following BLAST results are available for this feature:
BLAST of FC930806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 38
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930806 ID=FC930806; Name=FC930806; organism=Citrus clementina; type=EST; length=699bpback to top |