FC930806

Overview
NameFC930806
Unique NameFC930806
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13A_CAEEL (60S ribosomal protein L13a OS=Caenorhabditis elegans GN=rpl-16 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.479e-49
Identity = 94/191 (49.21%), Postives = 128/191 (67.02%), Query Frame = 2
Query:   89 GICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLKQLRAKAEKVAEENLAR 661
            G+  + +++D ++H+LGRLASIVAK+LL G KVV +R EEI +SG   R K+KYM FLRKR N  P+RG  H+RAP KIFWRTVRGM+PHKT            YEGVPA Y K K +  P A +  RLQ   K+C++GRL+ EVGW + D + +LE KRK +    +E+KK++ +L  +A+K A   +A+
Sbjct:    2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPKIAQ 191          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13A_DICDI (60S ribosomal protein L13a OS=Dictyostelium discoideum GN=rpl13a PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.493e-47
Identity = 92/179 (51.40%), Postives = 122/179 (68.16%), Query Frame = 2
Query:  101 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLKQLRAKAEK 637
            K +V+D + H+LGRLAS+VAK LL+GQK+V VRCEE+ +SG L R K+K+  FL   MNT  +RG  H R+P+KIFWR VRGM+PHKT            +EGVPAPYDKVKR+V+P AL+V++L    KY +L RL+ EVGW Y   + +LE +RK+RS   Y +   +K  R +A K
Sbjct:    5 KAIVIDGKGHLLGRLASVVAKSLLSGQKIVVVRCEELNISGPLSRNKLKWADFLNLTMNTNHARGHRHGRSPSKIFWRAVRGMLPHKTPRGQAALDNMKVFEGVPAPYDKVKRVVVPSALRVVKLNTTRKYTVLSRLSQEVGWKYRAVVAKLEVQRKQRSSTYYRKAALVKAYRTQALK 183          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL16C_SCHPO (60S ribosomal protein L16-C OS=Schizosaccharomyces pombe GN=rpl16c PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.554e-47
Identity = 94/188 (50.00%), Postives = 126/188 (67.02%), Query Frame = 2
Query:  101 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKK-QLKQLR-AKAEKVAEENLA 658
            K V++DA+ H++GRLAS VAK+LL GQKVV VRCEE+ +SG   R K+KY+ +LRK     PSRG  HFRAP++IF + VRGM+PHKT             EG+P P+DK KR+V+P AL+VLRL+   KYC +GRL+SEVGW Y + + +LE++RK +S   Y+ K    K +  AK +    E LA
Sbjct:    6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAALRVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKSAAFYQAKSANQKHINVAKTKSSVNEKLA 193          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL16A_YEAST (60S ribosomal protein L16-A OS=Saccharomyces cerevisiae GN=RPL16A PE=1 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 6.140e-46
Identity = 89/182 (48.90%), Postives = 121/182 (66.48%), Query Frame = 2
Query:  107 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLKQLRAKAEKVAEEN 652
            VV+D + H++GRLAS+VAK+LLNGQK+V VR EE+ +SG   R K+KY  FLRK      +RGP HFRAP++IF++ +RGM+ HKT            +EG+P PYDK KR+V+P AL+VLRL+ G KY  LG+L++ VGW Y D + +LE KRK  S   Y +K+   +  A A   A E+
Sbjct:    7 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAES 188          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL16B_YEAST (60S ribosomal protein L16-B OS=Saccharomyces cerevisiae GN=RPL16B PE=1 SV=3)

HSP 1 Score: 181.8 bits (460), Expect = 3.047e-45
Identity = 87/182 (47.80%), Postives = 120/182 (65.93%), Query Frame = 2
Query:  107 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLKQLRAKAEKVAEEN 652
            VV+DA+ H+LGRLAS +AK++LNGQK+V VR E + +SG   R K+KY  FLRK      +RGP HFRAP++I ++ +RGM+ HKT            +EG+P PYDK KR+V+P AL+VLRL+ G KY  LG+L++ VGW Y D + +LE KRK RS   Y +K+   +  + A   A E+
Sbjct:    6 VVIDAKDHLLGRLASTIAKQVLNGQKIVVVRAEALNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEDKRKVRSAEYYAKKRAFTKKVSSASAAASES 187          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13A_PIG (60S ribosomal protein L13a (Fragment) OS=Sus scrofa GN=RPL13A PE=2 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 7.025e-42
Identity = 82/135 (60.74%), Postives = 102/135 (75.56%), Query Frame = 2
Query:  107 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRL 511
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PSRGP HFRAP++IFWRTVRGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRL
Sbjct:    3 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKLTGKFXYLGRL 137          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: R13AX_HUMAN (Putative 60S ribosomal protein L13a-like MGC87657 OS=Homo sapiens PE=5 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.787e-20
Identity = 48/102 (47.06%), Postives = 66/102 (64.71%), Query Frame = 2
Query:  347 MIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLKQLRAKAEKVAEEN 652
            M+ HKT            ++G+P PYDK KRMV+P ALKV+RL+   K+ LLGR A EV W Y      LE+KRKE++++ Y +KKQL +LR +AEK  ++N
Sbjct:    1 MLRHKTKRGHASLDCLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFALLGRQAQEVRWKYQAVTATLEEKRKEKAKIHYWKKKQLMRLRKQAEKNVKKN 102          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RLSX_METTH (Fused L13/S9 ribosomal protein OS=Methanobacterium thermoautotrophicum GN=rpl13p/rps9p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.094e-14
Identity = 47/141 (33.33%), Postives = 79/141 (56.03%), Query Frame = 2
Query:  107 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSR-GPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVG 526
            ++++   H+LGRLAS+V+K+LL G++V+ +  E+I ++G       KY + + +   + P R GP + R P  IF RTVRGM+P+K             Y G+P  +   + + IPDA K   ++KG +   LG ++  +G
Sbjct:    4 MIINGEGHILGRLASVVSKKLLEGEEVIVLNAEKILITGSKEWAYGKYKQRIDRASISNPRRMGPKYPRRPDDIFRRTVRGMLPYKKSKGREAFKGLKAYVGIPREFKDEEMVEIPDA-KAGSIKKGME---LGEISELLG 140          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13_ARCFU (50S ribosomal protein L13P OS=Archaeoglobus fulgidus GN=rpl13p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.246e-13
Identity = 50/143 (34.97%), Postives = 74/143 (51.75%), Query Frame = 2
Query:  110 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYM---RFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGW 529
            V+DA  H+LGRL+S +AK LLNG+++V V  E+  ++G       KYM   R+  K       +GP   R P +IF RTVRGM+P K+            + GVP      +   I DAL + ++ K  KY  L  ++  +G+
Sbjct:   18 VIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGD------KYMVFERYKEKYDRGSKEKGPYFPRHPERIFKRTVRGMLPWKSSRGRDAYRRLRVFMGVPEELQGREFEKIEDAL-LEKVSKTDKYVTLAEVSRYLGF 153          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13_METAC (50S ribosomal protein L13P OS=Methanosarcina acetivorans GN=rpl13p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.604e-12
Identity = 51/143 (35.66%), Postives = 76/143 (53.15%), Query Frame = 2
Query:  101 KRVVVDARHHMLGRLASIVAKELLNG-QKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVG 526
            K  V+DA+  +LGRLAS VAK+LL+G +KV  +  E+  +SG       +Y R  R+R  T+   GP   + P +I  RT+RGM+P+K             Y GVP      + + IPDA   +RL    +Y  LG ++ ++G
Sbjct:    3 KMTVIDAKGLILGRLASSVAKQLLSGDEKVYIINAEQAIISGSRAATLREY-RETRERGATE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETVTIPDA--DMRLLSSSRYVELGEVSQKMG 140          
The following BLAST results are available for this feature:
BLAST of FC930806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
RL13A_CAEEL3.479e-4949.2160S ribosomal protein L13a OS=Caenorhabditis elega... [more]
RL13A_DICDI2.493e-4751.4060S ribosomal protein L13a OS=Dictyostelium discoi... [more]
RL16C_SCHPO5.554e-4750.0060S ribosomal protein L16-C OS=Schizosaccharomyces... [more]
RL16A_YEAST6.140e-4648.9060S ribosomal protein L16-A OS=Saccharomyces cerev... [more]
RL16B_YEAST3.047e-4547.8060S ribosomal protein L16-B OS=Saccharomyces cerev... [more]
RL13A_PIG7.025e-4260.7460S ribosomal protein L13a (Fragment) OS=Sus scrof... [more]
R13AX_HUMAN5.787e-2047.06Putative 60S ribosomal protein L13a-like MGC87657 ... [more]
RLSX_METTH8.094e-1433.33Fused L13/S9 ribosomal protein OS=Methanobacterium... [more]
RL13_ARCFU5.246e-1334.9750S ribosomal protein L13P OS=Archaeoglobus fulgid... [more]
RL13_METAC2.604e-1235.6650S ribosomal protein L13P OS=Methanosarcina aceti... [more]

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Properties
Property NameValue
Genbank descriptionC34109C03EF PostHarvP1 Citrus clementina cDNA clone C34109C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930806 ID=FC930806; Name=FC930806; organism=Citrus clementina; type=EST; length=699bp
GGAGAGAGGGAGAGAGAGAGAGCAGAAGAGGGAGAGAAAAAGCCAACAAA
ATAGAGAGAGAGGAACCCTAATAATGGTGTCGGGATCGGGAATCTGCGCG
AAGCGAGTGGTGGTGGACGCACGCCACCACATGCTGGGGCGGCTGGCGTC
GATCGTGGCCAAGGAGCTCCTCAACGGACAGAAAGTCGTCGCGGTCCGCT
GCGAAGAGATTTGCATGTCCGGCGGCCTCGTCCGCCAGAAAGTGAAGTAC
ATGCGGTTCCTTCGCAAGCGCATGAACACCAAGCCTTCTCGCGGTCCCAT
CCACTTCCGCGCCCCTGCCAAGATCTTCTGGCGCACCGTCCGCGGGATGA
TACCGCATAAGACCAAGCGTGGAGCTGCAGCACTTGCTCGATTGAAGGCA
TATGAAGGGGTCCCTGCACCTTATGACAAGGTGAAGAGAATGGTTATCCC
CGACGCTCTCAAGGTTTTGAGGCTTCAGAAGGGTCACAAGTACTGCTTGT
TAGGTCGCCTGGCATCTGAGGTTGGATGGAATTATTATGACACCATCAGG
GAGCTTGAGAAGAAGAGAAAGGAGAGGTCACAGGTGGCTTATGAGAGGAA
GAAGCAGCTCAAACAACTTAGGGCTAAGGCTGAGAAGGTTGCAGAAGAGA
ACTTGGCTCGCAATTGGACATCCTTGCTCCTGTCAATATTGATCAGTTA
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