FC930806

Overview
NameFC930806
Unique NameFC930806
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13_METKA (50S ribosomal protein L13P OS=Methanopyrus kandleri GN=rpl13p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12
Identity = 45/142 (31.69%), Postives = 74/142 (52.11%), Query Frame = 2
Query:  110 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQK-GHK-YCLLGRLASEVGW 529
            V+DA + +LGRLAS+VAK +L G+++  +  E+  ++G   ++      +L+K     P +GP + R P  IF R VRGM+P KT            Y G P   ++    + P+ +    + + GH  Y  LG L+ E+G+
Sbjct:   17 VIDAENAVLGRLASVVAKRILKGERIAVINTEKAIITG---KKNTIKEEWLQKIQRGDPKKGPFYPRRPDLIFRRVVRGMLPWKTKRGREAFKRLRAYIGTPRWVEEAN--IEPERVAEADMSRLGHLWYVTLGELSEELGY 153          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13_PYRKO (50S ribosomal protein L13P OS=Pyrococcus kodakaraensis GN=rpl13p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.801e-12
Identity = 49/142 (34.51%), Postives = 72/142 (50.70%), Query Frame = 2
Query:  110 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNY 535
            +++A   +LGRLAS VAK LL G++VV V  E+  ++G       KY +    R  T P RGP + +   +I  RTVRGM+P KT            Y GVP  ++  +   I +A  + RL    KY  +G +A  +G  +
Sbjct:    3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAIITGNREDIFAKYKQRTELRTRTNPRRGPFYPKRSDEIVRRTVRGMLPWKTDRGRKAFKRLKVYVGVPKEFEGKEFETISEA-HMSRLAT-PKYVTVGEVAKFLGGKF 142          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13_PYRFU (50S ribosomal protein L13P OS=Pyrococcus furiosus GN=rpl13p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 48/142 (33.80%), Postives = 72/142 (50.70%), Query Frame = 2
Query:  110 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNY 535
            +++A   +LGRLAS VAK LL G++VV V  E+  ++G       KY +    R  T P RGP + +   +I  RT+RGM+P KT            Y G+P  +   +   I +A  V RL +  KY  +G +A  +G  +
Sbjct:    3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAVITGNRDVIFKKYKQRTELRTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFQGKELETIIEA-HVSRLSR-PKYVTVGEVAKFLGGKF 142          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13_PYRAB (50S ribosomal protein L13P OS=Pyrococcus abyssi GN=rpl13p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 48/142 (33.80%), Postives = 72/142 (50.70%), Query Frame = 2
Query:  110 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNY 535
            +++A   +LGRLAS VAK LL G++VV V  E+  ++G       KY +    R  T P RGP + +   +I  RT+RGM+P KT            Y G+P  +   +   I +A  V RL +  KY  +G +A  +G  +
Sbjct:    3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA-HVSRLSR-PKYVTVGEVAKFLGGKF 142          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13_METBF (50S ribosomal protein L13P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl13p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 49/140 (35.00%), Postives = 74/140 (52.86%), Query Frame = 2
Query:  110 VVDARHHMLGRLASIVAKELLNG-QKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVG 526
            V+DA   +LGRLAS VAK+LL+G +++  V  E+  +SG       +Y R  R+R +T+   GP   + P +I  RT+RGM+P+K             Y GVP      + + I DA   +RL    KY  LG ++ ++G
Sbjct:    3 VIDANGLILGRLASTVAKQLLSGDEEIYIVNAEKAVISGSRATTLKEY-RETRERGSTE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPTELKDTETITIADA--DMRLLSSSKYIELGEVSQKMG 137          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13_PYRHO (50S ribosomal protein L13P OS=Pyrococcus horikoshii GN=rpl13p PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 48/142 (33.80%), Postives = 72/142 (50.70%), Query Frame = 2
Query:  110 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNY 535
            +++A   +LGRLAS VAK LL G++VV V  E+  ++G       KY +    R  T P RGP + +   +I  RT+RGM+P KT            Y G+P  +   +   I +A  V RL +  KY  +G +A  +G  +
Sbjct:    3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEA-HVSRLSR-PKYVTVGEVAKFLGGKF 142          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13_NATPD (50S ribosomal protein L13P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl13p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 46/142 (32.39%), Postives = 70/142 (49.30%), Query Frame = 2
Query:  107 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWN 532
            VV+DAR  +LGR+AS VA+  L+G+++  V  E+  ++G     +   M   RKR      RGP + + P +IF R+VRGM+P+KT            Y G P    +V      D L  +      K+  LG ++  +G N
Sbjct:   10 VVIDARDCILGRVASQVAERALDGERIAVVNAEQAVITGS----EDDIMEVYRKRDEVGSDRGPRYPKRPDRIFKRSVRGMLPYKTTRGREAFENVRIYMGNPYEEAEVLEDTSLDRLSNI------KFVSLGEVSENLGAN 141          
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13_METMA (50S ribosomal protein L13P OS=Methanosarcina mazei GN=rpl13p PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 50/140 (35.71%), Postives = 73/140 (52.14%), Query Frame = 2
Query:  110 VVDARHHMLGRLASIVAKELLNG-QKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVG 526
            V+DA+  +LGRLAS VAK+LL+G +KV  +  E+  +SG       +Y R  R R  T+   GP   + P +I  RT+RGM+P+K             Y GVP      +   I DA   +RL   +KY  LG ++ ++G
Sbjct:    3 VIDAKGLILGRLASSVAKQLLSGDEKVYIINAEKAIISGSRAATLREY-RETRDRGATE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETTTIADA--DMRLLSSNKYVELGEVSQKMG 137          
The following BLAST results are available for this feature:
BLAST of FC930806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
RL13_METKA4.441e-1231.6950S ribosomal protein L13P OS=Methanopyrus kandler... [more]
RL13_PYRKO5.801e-1234.5150S ribosomal protein L13P OS=Pyrococcus kodakarae... [more]
RL13_PYRFU2.204e-1133.8050S ribosomal protein L13P OS=Pyrococcus furiosus ... [more]
RL13_PYRAB2.204e-1133.8050S ribosomal protein L13P OS=Pyrococcus abyssi GN... [more]
RL13_METBF2.204e-1135.0050S ribosomal protein L13P OS=Methanosarcina barke... [more]
RL13_PYRHO2.879e-1133.8050S ribosomal protein L13P OS=Pyrococcus horikoshi... [more]
RL13_NATPD6.413e-1132.3950S ribosomal protein L13P OS=Natronomonas pharaon... [more]
RL13_METMA6.413e-1135.7150S ribosomal protein L13P OS=Methanosarcina mazei... [more]

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Properties
Property NameValue
Genbank descriptionC34109C03EF PostHarvP1 Citrus clementina cDNA clone C34109C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930806 ID=FC930806; Name=FC930806; organism=Citrus clementina; type=EST; length=699bp
GGAGAGAGGGAGAGAGAGAGAGCAGAAGAGGGAGAGAAAAAGCCAACAAA
ATAGAGAGAGAGGAACCCTAATAATGGTGTCGGGATCGGGAATCTGCGCG
AAGCGAGTGGTGGTGGACGCACGCCACCACATGCTGGGGCGGCTGGCGTC
GATCGTGGCCAAGGAGCTCCTCAACGGACAGAAAGTCGTCGCGGTCCGCT
GCGAAGAGATTTGCATGTCCGGCGGCCTCGTCCGCCAGAAAGTGAAGTAC
ATGCGGTTCCTTCGCAAGCGCATGAACACCAAGCCTTCTCGCGGTCCCAT
CCACTTCCGCGCCCCTGCCAAGATCTTCTGGCGCACCGTCCGCGGGATGA
TACCGCATAAGACCAAGCGTGGAGCTGCAGCACTTGCTCGATTGAAGGCA
TATGAAGGGGTCCCTGCACCTTATGACAAGGTGAAGAGAATGGTTATCCC
CGACGCTCTCAAGGTTTTGAGGCTTCAGAAGGGTCACAAGTACTGCTTGT
TAGGTCGCCTGGCATCTGAGGTTGGATGGAATTATTATGACACCATCAGG
GAGCTTGAGAAGAAGAGAAAGGAGAGGTCACAGGTGGCTTATGAGAGGAA
GAAGCAGCTCAAACAACTTAGGGCTAAGGCTGAGAAGGTTGCAGAAGAGA
ACTTGGCTCGCAATTGGACATCCTTGCTCCTGTCAATATTGATCAGTTA
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