FC930806
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13_METKA (50S ribosomal protein L13P OS=Methanopyrus kandleri GN=rpl13p PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12 Identity = 45/142 (31.69%), Postives = 74/142 (52.11%), Query Frame = 2 Query: 110 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQK-GHK-YCLLGRLASEVGW 529 V+DA + +LGRLAS+VAK +L G+++ + E+ ++G ++ +L+K P +GP + R P IF R VRGM+P KT Y G P ++ + P+ + + + GH Y LG L+ E+G+ Sbjct: 17 VIDAENAVLGRLASVVAKRILKGERIAVINTEKAIITG---KKNTIKEEWLQKIQRGDPKKGPFYPRRPDLIFRRVVRGMLPWKTKRGREAFKRLRAYIGTPRWVEEAN--IEPERVAEADMSRLGHLWYVTLGELSEELGY 153
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13_PYRKO (50S ribosomal protein L13P OS=Pyrococcus kodakaraensis GN=rpl13p PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.801e-12 Identity = 49/142 (34.51%), Postives = 72/142 (50.70%), Query Frame = 2 Query: 110 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNY 535 +++A +LGRLAS VAK LL G++VV V E+ ++G KY + R T P RGP + + +I RTVRGM+P KT Y GVP ++ + I +A + RL KY +G +A +G + Sbjct: 3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAIITGNREDIFAKYKQRTELRTRTNPRRGPFYPKRSDEIVRRTVRGMLPWKTDRGRKAFKRLKVYVGVPKEFEGKEFETISEA-HMSRLAT-PKYVTVGEVAKFLGGKF 142
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13_PYRFU (50S ribosomal protein L13P OS=Pyrococcus furiosus GN=rpl13p PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11 Identity = 48/142 (33.80%), Postives = 72/142 (50.70%), Query Frame = 2 Query: 110 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNY 535 +++A +LGRLAS VAK LL G++VV V E+ ++G KY + R T P RGP + + +I RT+RGM+P KT Y G+P + + I +A V RL + KY +G +A +G + Sbjct: 3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAVITGNRDVIFKKYKQRTELRTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFQGKELETIIEA-HVSRLSR-PKYVTVGEVAKFLGGKF 142
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13_PYRAB (50S ribosomal protein L13P OS=Pyrococcus abyssi GN=rpl13p PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11 Identity = 48/142 (33.80%), Postives = 72/142 (50.70%), Query Frame = 2 Query: 110 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNY 535 +++A +LGRLAS VAK LL G++VV V E+ ++G KY + R T P RGP + + +I RT+RGM+P KT Y G+P + + I +A V RL + KY +G +A +G + Sbjct: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA-HVSRLSR-PKYVTVGEVAKFLGGKF 142
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13_METBF (50S ribosomal protein L13P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl13p PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11 Identity = 49/140 (35.00%), Postives = 74/140 (52.86%), Query Frame = 2 Query: 110 VVDARHHMLGRLASIVAKELLNG-QKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVG 526 V+DA +LGRLAS VAK+LL+G +++ V E+ +SG +Y R R+R +T+ GP + P +I RT+RGM+P+K Y GVP + + I DA +RL KY LG ++ ++G Sbjct: 3 VIDANGLILGRLASTVAKQLLSGDEEIYIVNAEKAVISGSRATTLKEY-RETRERGSTE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPTELKDTETITIADA--DMRLLSSSKYIELGEVSQKMG 137
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13_PYRHO (50S ribosomal protein L13P OS=Pyrococcus horikoshii GN=rpl13p PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11 Identity = 48/142 (33.80%), Postives = 72/142 (50.70%), Query Frame = 2 Query: 110 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWNY 535 +++A +LGRLAS VAK LL G++VV V E+ ++G KY + R T P RGP + + +I RT+RGM+P KT Y G+P + + I +A V RL + KY +G +A +G + Sbjct: 3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEA-HVSRLSR-PKYVTVGEVAKFLGGKF 142
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13_NATPD (50S ribosomal protein L13P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl13p PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11 Identity = 46/142 (32.39%), Postives = 70/142 (49.30%), Query Frame = 2 Query: 107 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVGWN 532 VV+DAR +LGR+AS VA+ L+G+++ V E+ ++G + M RKR RGP + + P +IF R+VRGM+P+KT Y G P +V D L + K+ LG ++ +G N Sbjct: 10 VVIDARDCILGRVASQVAERALDGERIAVVNAEQAVITGS----EDDIMEVYRKRDEVGSDRGPRYPKRPDRIFKRSVRGMLPYKTTRGREAFENVRIYMGNPYEEAEVLEDTSLDRLSNI------KFVSLGEVSENLGAN 141
BLAST of FC930806 vs. ExPASy Swiss-Prot
Match: RL13_METMA (50S ribosomal protein L13P OS=Methanosarcina mazei GN=rpl13p PE=3 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11 Identity = 50/140 (35.71%), Postives = 73/140 (52.14%), Query Frame = 2 Query: 110 VVDARHHMLGRLASIVAKELLNG-QKVVAVRCEEICMSGGLVRQKVKYMRFLRKRMNTKPSRGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKYCLLGRLASEVG 526 V+DA+ +LGRLAS VAK+LL+G +KV + E+ +SG +Y R R R T+ GP + P +I RT+RGM+P+K Y GVP + I DA +RL +KY LG ++ ++G Sbjct: 3 VIDAKGLILGRLASSVAKQLLSGDEKVYIINAEKAIISGSRAATLREY-RETRDRGATE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETTTIADA--DMRLLSSNKYVELGEVSQKMG 137 The following BLAST results are available for this feature:
BLAST of FC930806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 38
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930806 ID=FC930806; Name=FC930806; organism=Citrus clementina; type=EST; length=699bpback to top |