FC930807

Overview
NameFC930807
Unique NameFC930807
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15217 contig Ccv1_Contig15217:1..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930807 vs. ExPASy Swiss-Prot
Match: RL13_CHICK (60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 3.440e-48
Identity = 97/190 (51.05%), Postives = 125/190 (65.79%), Query Frame = 1
Query:   82 NNVIPNGHFKKHWQNYVKTWFNQPAHXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 651
            N +I   HF K WQ  V TWFNQPA               I PRP AGP+RP+V   T++Y+ K+RAGRGF+LEELK AGI K+ A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+PEEL  ATQ+ GP MPI       +   ++++ K+FKA+  LR+ R N R FG R
Sbjct:    6 NGMILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPVAGPIRPIVRCPTVRYHKKVRAGRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSPEELKMATQLSGPVMPIRNVFKREKARVISEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of FC930807 vs. ExPASy Swiss-Prot
Match: RL13_RAT (60S ribosomal protein L13 OS=Rattus norvegicus GN=Rpl13 PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 7.664e-48
Identity = 96/190 (50.53%), Postives = 125/190 (65.79%), Query Frame = 1
Query:   82 NNVIPNGHFKKHWQNYVKTWFNQPAHXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 651
            N +I   HF K WQ  V TWFNQPA               I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI       +   +T++ K+FKA+  LR+ R N R FG R
Sbjct:    6 NGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of FC930807 vs. ExPASy Swiss-Prot
Match: RL13_MOUSE (60S ribosomal protein L13 OS=Mus musculus GN=Rpl13 PE=2 SV=3)

HSP 1 Score: 189.504 bits (480), Expect = 1.307e-47
Identity = 96/190 (50.53%), Postives = 125/190 (65.79%), Query Frame = 1
Query:   82 NNVIPNGHFKKHWQNYVKTWFNQPAHXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 651
            N +I   HF K WQ  V TWFNQPA               I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI       +   +T++ K+FKA+  LR+ R N R FG R
Sbjct:    6 NGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of FC930807 vs. ExPASy Swiss-Prot
Match: RL13_HUMAN (60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4)

HSP 1 Score: 188.734 bits (478), Expect = 2.230e-47
Identity = 94/190 (49.47%), Postives = 125/190 (65.79%), Query Frame = 1
Query:   82 NNVIPNGHFKKHWQNYVKTWFNQPAHXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 651
            N ++   HF K WQ  V TWFNQPA               I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MP+       +   +T++ K+FKA+  LR+ R N R FG R
Sbjct:    6 NGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of FC930807 vs. ExPASy Swiss-Prot
Match: RL13_BOVIN (60S ribosomal protein L13 OS=Bos taurus GN=RPL13 PE=2 SV=3)

HSP 1 Score: 188.734 bits (478), Expect = 2.230e-47
Identity = 97/190 (51.05%), Postives = 124/190 (65.26%), Query Frame = 1
Query:   82 NNVIPNGHFKKHWQNYVKTWFNQPAHXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 651
            N +I   HF K WQ  V TWFNQPA               I PRP +GPLRPVV   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+  E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI       +   +T++ K+FKA+  LR+ R N R FG R
Sbjct:    6 NGMILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPLRPVVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of FC930807 vs. ExPASy Swiss-Prot
Match: RL13_SPOFR (60S ribosomal protein L13 OS=Spodoptera frugiperda GN=RpL13 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.445e-46
Identity = 94/192 (48.96%), Postives = 124/192 (64.58%), Query Frame = 1
Query:   76 KHNNVIPNGHFKKHWQNYVKTWFNQPAHXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 651
            K NN+IPNGHF K WQ +VKTWFNQPA               + PRP AGPLRPVV   T++Y+ K+RAGRGFTL E++AAG+    A TIG++VD RR+N+S+E LQ NVQRLK Y+A+L++FP + +K   G++  EE   ATQ++GP MP+    P      +T++ K FKAY  LR  R   +  G R
Sbjct:    3 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIKKAKAVAPRPAAGPLRPVVRCPTIRYHTKVRAGRGFTLREIRAAGLNPAFARTIGIAVDPRRRNKSVESLQVNVQRLKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSIARAITEEEKDFKAYQYLRGARSIAKLVGIR 193          
BLAST of FC930807 vs. ExPASy Swiss-Prot
Match: RL13_CRIGR (60S ribosomal protein L13 OS=Cricetulus griseus GN=RPL13 PE=2 SV=3)

HSP 1 Score: 186.037 bits (471), Expect = 1.445e-46
Identity = 95/190 (50.00%), Postives = 124/190 (65.26%), Query Frame = 1
Query:   82 NNVIPNGHFKKHWQNYVKTWFNQPAHXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 651
            N +I   HF K WQ  V TWFNQPA               I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP M I       +   +T++ K+FKA+  LR+ R N R FG R
Sbjct:    6 NGMILKPHFHKDWQRRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMRIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of FC930807 vs. ExPASy Swiss-Prot
Match: RL13_SCHPO (60S ribosomal protein L13 OS=Schizosaccharomyces pombe GN=rpl13 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.072e-41
Identity = 91/187 (48.66%), Postives = 115/187 (61.50%), Query Frame = 1
Query:   91 IPNGHFKKHWQNYVKTWFNQPAHXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFGAR 651
            +PN HF K WQ YVKTWFNQP                I PRP    +RP V   T++YNMK+RAGRGFTLEELKAAG+ +++A TIG+ VDHRR+NRS E LQ NV+R+K Y A L+VFPR+A + K GD+     A  T V    +PI  E    E   +T++ K+F A+  L  ER   R+ GAR
Sbjct:    9 LPNAHFHKDWQRYVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEA-IRPAVKPPTIRYNMKVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDV-AAVLPITQE-AVEEAKPITEEAKNFNAFSTLSNERAYARYAGAR 192          
BLAST of FC930807 vs. ExPASy Swiss-Prot
Match: RL13_SCHMA (60S ribosomal protein L13 OS=Schistosoma mansoni GN=RPL13 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.072e-41
Identity = 83/178 (46.63%), Postives = 116/178 (65.17%), Query Frame = 1
Query:   82 NNVIPNGHFKKHWQNYVKTWFNQPAHXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLR 615
            N+V+ + HF+K WQ  VKTWFNQPA               I PRP +GPLRP+V+  T +YNMK+R+GRGF+L+E++AAG+  K A TIG++VDHRR+N S+EGLQ NV RLK YKAKL++FP    K +A D+  +E+  ATQ++ P +PI      ++  K T     + A+  +R
Sbjct:    5 NDVLHHNHFRKKWQFMVKTWFNQPARKERRRQARKAKAQRIAPRPASGPLRPIVNCPTFRYNMKVRSGRGFSLQEVRAAGLNPKFARTIGIAVDHRRRNVSVEGLQRNVARLKAYKAKLILFPLNPAKPQAMDAKADEVKKATQLRRPVLPITQRAKRLKAHKPTSSELRYSAFHAIR 182          
BLAST of FC930807 vs. ExPASy Swiss-Prot
Match: RL13_DICDI (60S ribosomal protein L13 OS=Dictyostelium discoideum GN=rpl13 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.548e-40
Identity = 89/193 (46.11%), Postives = 116/193 (60.10%), Query Frame = 1
Query:   79 HNNVIPNGHFKKHWQNYVKTWFNQPAHXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELV--KVTQDMKSFKAYDKLRIERVNERHFGAR 651
            HN V+ N HF+KHWQ  V+TWFNQPA               +FPRP A  L+PVV G T++YNMK+RAGRGFTLEELKAAG+  + A TIG++VD RR N++ + L  N QRLK Y++KLV+FPR+    K G++  EE+A A Q   P+   +    T E    K T+  K F AY  L+      +  G R
Sbjct:    4 HNKVLSNDHFRKHWQMRVRTWFNQPARKIRRRNNRIEKAAKVFPRPIA-TLKPVVRGSTIRYNMKVRAGRGFTLEELKAAGLTAQYARTIGIAVDTRRVNKTQQSLTLNTQRLKNYQSKLVLFPRKVNAPKKGEATKEEVAKAVQTLKPFTVKSAIAVTCEQTPRKPTEAEKKFSAYATLKAADSKAKTVGIR 195          
The following BLAST results are available for this feature:
BLAST of FC930807 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL13_CHICK3.440e-4851.0560S ribosomal protein L13 OS=Gallus gallus GN=RPL1... [more]
RL13_RAT7.664e-4850.5360S ribosomal protein L13 OS=Rattus norvegicus GN=... [more]
RL13_MOUSE1.307e-4750.5360S ribosomal protein L13 OS=Mus musculus GN=Rpl13... [more]
RL13_HUMAN2.230e-4749.4760S ribosomal protein L13 OS=Homo sapiens GN=RPL13... [more]
RL13_BOVIN2.230e-4751.0560S ribosomal protein L13 OS=Bos taurus GN=RPL13 P... [more]
RL13_SPOFR1.445e-4648.9660S ribosomal protein L13 OS=Spodoptera frugiperda... [more]
RL13_CRIGR1.445e-4650.0060S ribosomal protein L13 OS=Cricetulus griseus GN... [more]
RL13_SCHPO1.072e-4148.6660S ribosomal protein L13 OS=Schizosaccharomyces p... [more]
RL13_SCHMA1.072e-4146.6360S ribosomal protein L13 OS=Schistosoma mansoni G... [more]
RL13_DICDI1.548e-4046.1160S ribosomal protein L13 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionC34109C04EF PostHarvP1 Citrus clementina cDNA clone C34109C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930807 ID=FC930807; Name=FC930807; organism=Citrus clementina; type=EST; length=654bp
GGGGTTGGCTCTGTTGCCGTCGAGACTGAGAGAAACGGACATAGTCGTCT
GCATTTCGCTCTGTAAACAGAAATGAAGCATAACAACGTAATTCCAAATG
GGCACTTTAAGAAGCATTGGCAGAACTATGTCAAGACTTGGTTCAACCAA
CCTGCTCACAAAAATCGACGACGAGTCGCTCGTCAAAAGAAGGCCGTTAA
AATCTTCCCTCGCCCTACTGCTGGGCCGCTTCGTCCCGTCGTTCATGGCC
AGACTTTGAAATACAACATGAAATTAAGGGCTGGCAGAGGCTTTACTCTT
GAGGAACTCAAGGCTGCTGGAATTCCCAAGAAACTGGCTCCGACAATTGG
TGTTTCAGTCGATCATCGACGCAAGAACCGTTCTCTTGAGGGTCTTCAAT
CTAATGTTCAGAGGCTCAAGACTTACAAGGCTAAGTTGGTTGTTTTCCCA
AGACGTGCTCGCAAGTTCAAGGCTGGTGATTCTGCCCCTGAGGAATTGGC
AACAGCAACTCAAGTACAAGGACCTTACATGCCCATTGCTCCTGAGAAGC
CTACTGTCGAGCTTGTTAAGGTTACTCAAGATATGAAGTCCTTCAAGGCT
TATGACAAACTCCGTATCGAGCGTGTGAACGAGCGCCATTTTGGTGCCAG
GATG
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