FC930811

Overview
NameFC930811
Unique NameFC930811
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15504 contig Ccv1_Contig15504:32..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930811 vs. ExPASy Swiss-Prot
Match: ACCO1_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Solanum lycopersicum GN=ACO1 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.839e-13
Identity = 45/157 (28.66%), Postives = 76/157 (48.41%), Query Frame = 3
Query:  258 CKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKLDWADLFSMLTLPVHLRKPHLFPKLPPSLRETLEVYSMELKSLAENLISXMGEVLNIKDEEMREFF---EKWSAAMRMNYYPPCPQPEKXMGLSPH 719
            C+ WGFF+LVNHG+    ++ ++K  +G +   ME++ K       +E      V +E   LDW   F +  LP         P L    RE +  ++  L+ LAE L+  + E L ++   ++  F   +  +   +++ YPPCP+P+   GL  H
Sbjct:   28 CENWGFFELVNHGIPHEVMDTVEKMTKGHYKKCMEQRFKELVASKGLEA-----VQAEVTDLDWESTFFLRHLPT--SNISQVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAH 177          
BLAST of FC930811 vs. ExPASy Swiss-Prot
Match: G3OX4_ARATH (Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.626e-13
Identity = 55/211 (26.07%), Postives = 96/211 (45.50%), Query Frame = 3
Query:  108 LVVPDRYIRPDQDSPLISDDTLISQIPVIDMQXXXXXXXXXXXXAKLDFTCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKLDWADLFSMLTLPVHLRKPHLFPKLPPSLRETLEVYSMELKSLAENLI-SXMGEV-LNIKDEEMREFFEKWSA-----AMRMNYYPPCPQPEKXMGLSPH 719
            L   D  +RP   S  +S D +   IPVID+               +    K WG FQ+ NHG+S   L+ ++   +  F++  E K +       + G+G+  +    +K  W++ F++           L+P         ++ Y  E++ LA  L+   +G + + ++D E     EK  +     A+R+N+YP CP+PE+ MGL+ H
Sbjct:   27 LTAADSLLRP---SSAVSFDAVEESIPVIDLSNPDVTTL-------IGDASKTWGAFQIANHGISQKLLDDIESLSKTLFDMPSERKLEAASSDKGVSGYGEPRISPFFEKKMWSEGFTIADDSYRNHFNTLWPHDHTKYCGIIQEYVDEMEKLASRLLYCILGSLGVTVEDIEWAHKLEKSGSKVGRGAIRLNHYPVCPEPERAMGLAAH 227          
BLAST of FC930811 vs. ExPASy Swiss-Prot
Match: G3OX3_ARATH (Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.626e-13
Identity = 42/162 (25.93%), Postives = 75/162 (46.30%), Query Frame = 3
Query:  258 CKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKLDWADLFSMLTLPVHLRKPHLFPKLPPSLRETLEVYSMELKSLAENLISXMGEVLNIKDEEMREFF--------EKWSAAMRMNYYPPCPQPEKXMGLSPH 719
            C+EWG F + +HG+S + L  +  +++  F+L M  K    + P +  G+G   +     KL W++ FS++   +      L+P         +E Y   +  L+  LIS +   L +  E++            +   + +++N YP CP P   MGL+PH
Sbjct:   65 CEEWGVFHITDHGVSHSLLHNVDCQMKRLFSLPMHRKILAVRSPDESTGYGVVRISMFYDKLMWSEGFSVMGSSLRRHATLLWPDDHAEFCNVMEEYQKAMDDLSHRLISMLMGSLGLTHEDLGWLVPDKTGSGTDSIQSFLQLNSYPVCPDPHLAMGLAPH 226          
BLAST of FC930811 vs. ExPASy Swiss-Prot
Match: ACCO4_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Solanum lycopersicum GN=ACO4 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.626e-13
Identity = 45/157 (28.66%), Postives = 76/157 (48.41%), Query Frame = 3
Query:  258 CKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKLDWADLFSMLTLPVHLRKPHLFPKLPPSLRETLEVYSMELKSLAENLISXMGEVLNIKDEEMREFF---EKWSAAMRMNYYPPCPQPEKXMGLSPH 719
            C+ WGFF+LVNHG+    ++ ++K  +G +   ME++ K       +E      V +E   LDW   F +  LP         P L    RE +  ++  L+ LAE L+  + E L ++   ++  F   +  +   +++ YPPCP+P+   GL  H
Sbjct:   28 CENWGFFELVNHGIPHEVMDTVEKLTKGHYKKCMEQRFKELVASKGLEA-----VQAEVTDLDWESTFFLRHLPT--SNISQVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAH 177          
BLAST of FC930811 vs. ExPASy Swiss-Prot
Match: ACCO3_CUCME (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Cucumis melo GN=ACO3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.219e-12
Identity = 44/162 (27.16%), Postives = 82/162 (50.62%), Query Frame = 3
Query:  243 KLDFTCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKLDWADLFSMLTLPVHLRKPHLFPKLPPSLRETLEVYSMELKSLAENLISXMGEVLNIKDEEMREFF---EKWSAAMRMNYYPPCPQPEKXMGLSPH 719
            +++  C+ WGFF+LVNHG+S   ++K++K  +  +   ME++ K       +   G   V +E    DW   F +  LPV          L    ++ ++ ++ EL+ LAE ++  + E L ++   +++ F   +  +   +++ YPPCP+PE   GL  H
Sbjct:   24 QINDACENWGFFELVNHGISHELMDKVEKLTKEHYRKCMEQRFKEM-----VASKGLDSVETEINDTDWESTFFLRHLPVSNMSE--IGDLDEEYKKVMKEFADELEKLAEEVLDLLCENLGLEKGYLKKVFYGSKGPNFGTKVSNYPPCPKPELIKGLRAH 178          
BLAST of FC930811 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12
Identity = 42/165 (25.45%), Postives = 81/165 (49.09%), Query Frame = 3
Query:  240 AKLDFTCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKLDWADLFSMLTLPVHLRKPHLF--PKLPPSLRETLEVYSMELKSLAENLISXMGEVLNIKDEEMREFFEKWSA---AMRMNYYPPCPQPEKXMGLSPH 719
            A ++  C+ WGFF++VNHG+    ++  +K  +  + +SME+K         +E   +     E + +DW   F +     HL + +L+  P +    R  ++ +   L++LAE+L+  + E L ++   +++ F          +++ YP CP+PE   GL  H
Sbjct:   25 ALINDACENWGFFEIVNHGLPHDLMDNAEKMTKEHYKISMEQKFNDMLKSKGLENLER-----EVEDVDWESTFYLR----HLPQSNLYDIPDMSDEYRTAMKDFGKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVSNYPACPKPEMIKGLRAH 180          
BLAST of FC930811 vs. ExPASy Swiss-Prot
Match: LDOX_MAIZE (Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.101e-11
Identity = 51/243 (20.99%), Postives = 94/243 (38.68%), Query Frame = 3
Query:   81 VQELVKNPALVVPDRYIRPDQDSPLISD----------DTLISQIPVIDMQXXXXXXXXXXXXAK----LDFTCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHP--GDMEGFGQAFVVSEEQKLDWADLFSMLTLPVHLRKPHLFPKLPPSLRETLEVYSMELKSLAENLISXMGEVLNIKDEEMREFFEKWSAA--------------MRMNYYPPCPQPEKXMGLSPH 719
            V+ L  +    +P  Y+RP  +   + D          D    +IPV+D+              +    +     +WG   +  HG+    +++L+     FF L +++K+ Y   P  G ++G+G     +   + +W D    L  P  L    L+P  PP        +    + LA  L++ +   + +   +  +  EK                  +++NYYP CPQPE  +G+  H
Sbjct:   14 VEALSLSGLSAIPPEYVRPADERAGLGDAFDLARTHANDHTAPRIPVVDISPFLDSSSQQQQRDECVEAVRAAAADWGVMHIAGHGIPAELMDRLRAAGTAFFALPVQDKEAYANDPAAGRLQGYGSRLATNTCGQREWEDYLFHLVHPDGLADHALWPAYPPDYIAATRDFGRRTRDLASTLLAILS--MGLLGTDRGDALEKALTTTTTRTAADDDLLLQLKINYYPRCPQPELAVGVEAH 254          
BLAST of FC930811 vs. ExPASy Swiss-Prot
Match: ACCO1_CUCME (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Cucumis melo GN=ACO1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.438e-11
Identity = 42/162 (25.93%), Postives = 80/162 (49.38%), Query Frame = 3
Query:  243 KLDFTCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKLDWADLFSMLTLPVHLRKPHLFPKLPPSLRETLEVYSMELKSLAENLISXMGEVLNIKDEEMREFF---EKWSAAMRMNYYPPCPQPEKXMGLSPH 719
            +++  C+ WGFF+LVNHG+   FL+ ++K     +   MEE+ K       +E        +E   +DW   F +  LP           L    ++ ++ ++ +L++LAE L+  + E L ++   +++ F   +  +   +++ YPPCP+P+   GL  H
Sbjct:   23 QIEDACQNWGFFELVNHGIPHEFLDMVEKMTRDHYKKCMEERFKETVLSKGLEA-----AQAEVNDMDWESTFFLRHLPE--SNISQMSDLDEEYKKIMKEFAKKLENLAEELLDLLCENLGLEKGYLKKAFYGSKGPTFGTKVSNYPPCPKPDLIKGLRAH 177          
BLAST of FC930811 vs. ExPASy Swiss-Prot
Match: ACCO_PERAE (1-aminocyclopropane-1-carboxylate oxidase OS=Persea americana GN=ACO PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 41/159 (25.79%), Postives = 78/159 (49.06%), Query Frame = 3
Query:  258 CKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKLDWADLFSMLTLPVHLRKPHLFPKLPPSLRETLEVYSMELKSLAENLISXMGEVLNIKDEEMREFFEKWSAAM-----RMNYYPPCPQPEKXMGLSPH 719
            C+ WGFF+LVNH +    ++++++  +  +   ME++ K       +EG      V +   +DW   F +  LPV        P L    R+ ++ ++ +L+ LAE ++  + E L ++   ++  F   +  +     +++ YPPCP+PE   GL  H
Sbjct:   28 CENWGFFELVNHSIPVELMDEVERLTKEHYKKCMEQRFKELM-ASKVEG-----AVVDANDMDWESTFFIRHLPVSNLSE--IPDLTDEHRKVMKEFAEKLEKLAEQVLDLLCENLGLEKGYLKMAFAGTTTGLPTFGTKVSNYPPCPRPELFKGLRAH 178          
BLAST of FC930811 vs. ExPASy Swiss-Prot
Match: IDS3_HORVU (2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 9.322e-11
Identity = 45/168 (26.79%), Postives = 80/168 (47.62%), Query Frame = 3
Query:  261 KEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYW---QHPGDMEGFGQAFVVSEEQKLDWADLFSMLT-LPVHLRKPHLFPKLPPSLRETLEVYSMELKSLAENLISXMGEVLNIKDEEMREFFEKWSAAMRMNYYPPCPQPEKXMGLSPH----LMQLHLP 740
            KE GFFQ+VNHG+S   +  ++   E FF+L   +K   +   +H  +    G  +    E+   W D   +    PV     + +P  P  LR+ +E ++ + + + + L+  + E + I+ +         +  + +N+YP CP P+K +G  PH    L+ L LP
Sbjct:   56 KELGFFQVVNHGVSKQVMRDMEGMCEQFFHLPAADKASLYSEERHKPNRLFSGATYDTGGEKY--WRDCLRLACPFPVD-DSINEWPDTPKGLRDVIEKFTSQTRDVGKELLRLLCEGMGIQADYFEGDLSGGNVILNINHYPSCPNPDKALGQPPHCDRNLITLLLP 220          
The following BLAST results are available for this feature:
BLAST of FC930811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
ACCO1_SOLLC5.839e-1328.661-aminocyclopropane-1-carboxylate oxidase 1 OS=Sol... [more]
G3OX4_ARATH7.626e-1326.07Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis th... [more]
G3OX3_ARATH7.626e-1325.93Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis th... [more]
ACCO4_SOLLC7.626e-1328.661-aminocyclopropane-1-carboxylate oxidase 4 OS=Sol... [more]
ACCO3_CUCME2.219e-1227.161-aminocyclopropane-1-carboxylate oxidase 3 OS=Cuc... [more]
ACCO1_BRAJU4.943e-1225.451-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]
LDOX_MAIZE1.101e-1120.99Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 P... [more]
ACCO1_CUCME1.438e-1125.931-aminocyclopropane-1-carboxylate oxidase 1 OS=Cuc... [more]
ACCO_PERAE5.465e-1125.791-aminocyclopropane-1-carboxylate oxidase OS=Perse... [more]
IDS3_HORVU9.322e-1126.792'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vu... [more]

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Properties
Property NameValue
Genbank descriptionC34109C08EF PostHarvP1 Citrus clementina cDNA clone C34109C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930811 ID=FC930811; Name=FC930811; organism=Citrus clementina; type=EST; length=744bp
AATACAAAGCTGCAGCAATCTTGAAAGGATTTGAGGAACAAAAGATGGCC
CAGATTGGAAGTTCTCTCCTTGTGCCTTGTGTTCAAGAGTTGGTCAAGAA
TCCTGCGTTAGTTGTCCCCGACAGATACATACGTCCAGATCAAGATTCAC
CACTCATTTCTGATGATACTTTGATTTCACAGATACCAGTTATTGACATG
CAAAGCTTACTTTCTGAAGAATCAATGGATTCTGAGCTAGCCAAGCTCGA
CTTCACATGCAAAGAATGGGGTTTTTTCCAGCTGGTAAATCATGGAATGA
GCACAGCATTTCTAGAGAAATTAAAGAAAGAGGTTGAGGGATTCTTCAAT
CTCAGCATGGAAGAAAAGAAAAAATATTGGCAGCATCCAGGAGATATGGA
AGGCTTTGGACAAGCCTTTGTTGTATCTGAGGAACAAAAGCTTGATTGGG
CTGACCTTTTCTCCATGCTGACTCTTCCAGTTCATCTGAGGAAGCCACAC
TTATTTCCTAAGCTCCCTCCTTCCCTCAGAGAGACCTTGGAAGTTTACTC
AATGGAATTAAAATCCCTAGCCGAGAACCTAATATCGAANATGGGAGAAG
TGTTAAATATCAAAGATGAAGAAATGAGAGAATTCTTTGAAAAATGGAGT
GCAGCAATGAGGATGAATTATTACCCTCCATGTCCTCAGCCCGAGAAGGN
TATGGGCCTGTCGCCACATCTGATGCAGCTGCACTTACCATCTG
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