FC930813

Overview
NameFC930813
Unique NameFC930813
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930813_ssr264 microsatellite FC930813_ssr264:264..275. BLAST: Citrus ESTs to TAIR9
Homology
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_EUCGG (Photosystem I assembly protein ycf3 OS=Eucalyptus globulus subsp. globulus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_CHLSC (Photosystem I assembly protein ycf3 OS=Chloranthus spicatus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_TOBAC (Photosystem I assembly protein ycf3 OS=Nicotiana tabacum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.601e-16
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFIDKTFSIVANILLR+IPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRVIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_NICTO (Photosystem I assembly protein ycf3 OS=Nicotiana tomentosiformis GN=ycf3 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.601e-16
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFIDKTFSIVANILLR+IPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRVIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_NICSY (Photosystem I assembly protein ycf3 OS=Nicotiana sylvestris GN=ycf3 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.601e-16
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFIDKTFSIVANILLR+IPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRVIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_DAUCA (Photosystem I assembly protein ycf3 OS=Daucus carota GN=ycf3 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.601e-16
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFIDKTFSI+ANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIIANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_PELHO (Photosystem I assembly protein ycf3 OS=Pelargonium hortorum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.848e-16
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFIDKTFSIVANILLRIIPTT GE+EAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEREAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_PIPCE (Photosystem I assembly protein ycf3 OS=Piper cenocladum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.025e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRS+INGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSQINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_ORYSJ (Photosystem I assembly protein ycf3 OS=Oryza sativa subsp. japonica GN=ycf3 PE=2 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.025e-15
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 229
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEK AFTYYRDG +
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDGML 44          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_ORYSI (Photosystem I assembly protein ycf3 OS=Oryza sativa subsp. indica GN=ycf3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.025e-15
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 229
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEK AFTYYRDG +
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDGML 44          
The following BLAST results are available for this feature:
BLAST of FC930813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
YCF3_EUCGG3.523e-1697.62Photosystem I assembly protein ycf3 OS=Eucalyptus ... [more]
YCF3_CHLSC3.523e-1697.62Photosystem I assembly protein ycf3 OS=Chloranthus... [more]
YCF3_TOBAC4.601e-1695.24Photosystem I assembly protein ycf3 OS=Nicotiana t... [more]
YCF3_NICTO4.601e-1695.24Photosystem I assembly protein ycf3 OS=Nicotiana t... [more]
YCF3_NICSY4.601e-1695.24Photosystem I assembly protein ycf3 OS=Nicotiana s... [more]
YCF3_DAUCA4.601e-1695.24Photosystem I assembly protein ycf3 OS=Daucus caro... [more]
YCF3_PELHO7.848e-1695.24Photosystem I assembly protein ycf3 OS=Pelargonium... [more]
YCF3_PIPCE1.025e-1595.24Photosystem I assembly protein ycf3 OS=Piper cenoc... [more]
YCF3_ORYSJ1.025e-1590.91Photosystem I assembly protein ycf3 OS=Oryza sativ... [more]
YCF3_ORYSI1.025e-1590.91Photosystem I assembly protein ycf3 OS=Oryza sativ... [more]

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Properties
Property NameValue
Genbank descriptionC34109C10EF PostHarvP1 Citrus clementina cDNA clone C34109C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930813 ID=FC930813; Name=FC930813; organism=Citrus clementina; type=EST; length=666bp
CTGCTTTTATGTTATTTTGTACTGTACAATTCCTTTGTTTGTGGGATCAT
TTTCTCACAAGAGGTAATGAAACGAATTATAGAATGGATTTTTACCTATG
CCTAGATCGCGGATAAACGGAAATTTTATTGATAAGACCTTTTCGATTGT
AGCCAATATATTATTACGAATAATTCCGACAACTGTAGGAGAAAAAGAGG
CATTTACCTATTACAGAGATGGTGCGATTTGATTAGTTTTTTATTTACCC
CTTTCGGTCTTAGAAGAAAGAAAGACAATTCGGGATAGAAAAAAAAAAAA
AAAAAAAAAGATTATTGAAAAAATCTACGCTTGTTGAAGGTGAAGTTTAT
AGATAAAACCATTCCTTCTGTCGTGTATCCCCGATTAATGCAGCCTCAGA
TGCTTCAATTGTCGATTCTAGTATTGAGCGAAAGGTTACACCTATGGGTT
CTGTATTGCAAGTCAACCCTACTACACCAGTACCAATAGGCGGCATAGGG
GAAGAGGCGCTACGTCTAGGAATCAGCAACACGAAAACTTTGTTATAAAC
TGCCCCCTTTCCTTAGCGGGATCGGGACTAAGAAGAATGGTTGGGATAAC
AAACATCCATCTCGTTCGTACTGTGGATACCCGTANTACCATCGAAGACT
GTTGAAGTGATTAATT
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