FC930813

Overview
NameFC930813
Unique NameFC930813
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930813_ssr264 microsatellite FC930813_ssr264:264..275. BLAST: Citrus ESTs to TAIR9
Homology
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_ORYSA (Photosystem I assembly protein ycf3 OS=Oryza sativa GN=ycf3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.025e-15
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 229
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEK AFTYYRDG +
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDGML 44          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_ORYNI (Photosystem I assembly protein ycf3 OS=Oryza nivara GN=ycf3 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.025e-15
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 229
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEK AFTYYRDG +
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDGML 44          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_GOSHI (Photosystem I assembly protein ycf3 OS=Gossypium hirsutum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.025e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRS+INGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSQINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_GOSBA (Photosystem I assembly protein ycf3 OS=Gossypium barbadense GN=ycf3 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.025e-15
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRS+INGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSQINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_LOTJA (Photosystem I assembly protein ycf3 OS=Lotus japonicus GN=ycf3 PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.339e-15
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFIDKTFS+VANILL+IIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSVVANILLQIIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_HORVU (Photosystem I assembly protein ycf3 OS=Hordeum vulgare GN=ycf3 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.339e-15
Identity = 38/44 (86.36%), Postives = 42/44 (95.45%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 229
            MPRSR+NGNFIDKTFSI+ANILLRIIPTT GEK+AFTYYRDG +
Sbjct:    1 MPRSRVNGNFIDKTFSIIANILLRIIPTTSGEKKAFTYYRDGML 44          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_ATRBE (Photosystem I assembly protein ycf3 OS=Atropa belladonna GN=ycf3 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.339e-15
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFID+TFSIVANILLR+IPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDQTFSIVANILLRVIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_SOLLC (Photosystem I assembly protein ycf3 OS=Solanum lycopersicum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.748e-15
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFIDKTFSIVA+ILLR+IPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVADILLRVIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_SOLBU (Photosystem I assembly protein ycf3 OS=Solanum bulbocastanum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.748e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSR NGNFIDKTFSIVANILLR+IPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRTNGNFIDKTFSIVANILLRVIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_COFAR (Photosystem I assembly protein ycf3 OS=Coffea arabica GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.284e-15
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRS+INGNFIDKTFSIVANILLRIIPTT GE+EAFTYYRDG
Sbjct:    1 MPRSQINGNFIDKTFSIVANILLRIIPTTSGEREAFTYYRDG 42          
The following BLAST results are available for this feature:
BLAST of FC930813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
YCF3_ORYSA1.025e-1590.91Photosystem I assembly protein ycf3 OS=Oryza sativ... [more]
YCF3_ORYNI1.025e-1590.91Photosystem I assembly protein ycf3 OS=Oryza nivar... [more]
YCF3_GOSHI1.025e-1595.24Photosystem I assembly protein ycf3 OS=Gossypium h... [more]
YCF3_GOSBA1.025e-1595.24Photosystem I assembly protein ycf3 OS=Gossypium b... [more]
YCF3_LOTJA1.339e-1592.86Photosystem I assembly protein ycf3 OS=Lotus japon... [more]
YCF3_HORVU1.339e-1586.36Photosystem I assembly protein ycf3 OS=Hordeum vul... [more]
YCF3_ATRBE1.339e-1592.86Photosystem I assembly protein ycf3 OS=Atropa bell... [more]
YCF3_SOLLC1.748e-1592.86Photosystem I assembly protein ycf3 OS=Solanum lyc... [more]
YCF3_SOLBU1.748e-1592.86Photosystem I assembly protein ycf3 OS=Solanum bul... [more]
YCF3_COFAR2.284e-1592.86Photosystem I assembly protein ycf3 OS=Coffea arab... [more]

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Properties
Property NameValue
Genbank descriptionC34109C10EF PostHarvP1 Citrus clementina cDNA clone C34109C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930813 ID=FC930813; Name=FC930813; organism=Citrus clementina; type=EST; length=666bp
CTGCTTTTATGTTATTTTGTACTGTACAATTCCTTTGTTTGTGGGATCAT
TTTCTCACAAGAGGTAATGAAACGAATTATAGAATGGATTTTTACCTATG
CCTAGATCGCGGATAAACGGAAATTTTATTGATAAGACCTTTTCGATTGT
AGCCAATATATTATTACGAATAATTCCGACAACTGTAGGAGAAAAAGAGG
CATTTACCTATTACAGAGATGGTGCGATTTGATTAGTTTTTTATTTACCC
CTTTCGGTCTTAGAAGAAAGAAAGACAATTCGGGATAGAAAAAAAAAAAA
AAAAAAAAAGATTATTGAAAAAATCTACGCTTGTTGAAGGTGAAGTTTAT
AGATAAAACCATTCCTTCTGTCGTGTATCCCCGATTAATGCAGCCTCAGA
TGCTTCAATTGTCGATTCTAGTATTGAGCGAAAGGTTACACCTATGGGTT
CTGTATTGCAAGTCAACCCTACTACACCAGTACCAATAGGCGGCATAGGG
GAAGAGGCGCTACGTCTAGGAATCAGCAACACGAAAACTTTGTTATAAAC
TGCCCCCTTTCCTTAGCGGGATCGGGACTAAGAAGAATGGTTGGGATAAC
AAACATCCATCTCGTTCGTACTGTGGATACCCGTANTACCATCGAAGACT
GTTGAAGTGATTAATT
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