FC930813

Overview
NameFC930813
Unique NameFC930813
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930813_ssr264 microsatellite FC930813_ssr264:264..275. BLAST: Citrus ESTs to TAIR9
Homology
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_SACHY (Photosystem I assembly protein ycf3 OS=Saccharum hybrid GN=ycf3 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.982e-15
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 229
            MPRSRINGNFIDKTFSIVANILL+IIPTT GEK AFTYYRDG +
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLQIIPTTSGEKRAFTYYRDGML 44          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_PLAOC (Photosystem I assembly protein ycf3 OS=Platanus occidentalis GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.982e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFIDKT SIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_NYMAL (Photosystem I assembly protein ycf3 OS=Nymphaea alba GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.982e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFIDKT SIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_NUPAD (Photosystem I assembly protein ycf3 OS=Nuphar advena GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.982e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFIDKT SIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_MAIZE (Photosystem I assembly protein ycf3 OS=Zea mays GN=ycf3 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.982e-15
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 229
            MPRSRINGNFIDKTFSIVANILL+IIPTT GEK AFTYYRDG +
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLQIIPTTSGEKRAFTYYRDGML 44          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_LIRTU (Photosystem I assembly protein ycf3 OS=Liriodendron tulipifera GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.982e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFIDKT SIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_HELAN (Photosystem I assembly protein ycf3 OS=Helianthus annuus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.982e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            M RSRINGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MSRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_DRIGR (Photosystem I assembly protein ycf3 OS=Drimys granadensis GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.982e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFIDKT SIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_DIOEL (Photosystem I assembly protein ycf3 OS=Dioscorea elephantipes GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.982e-15
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 229
            MPRS+INGNFIDKT SIVANILLRIIPTT GEK+AFTYYRDGAI
Sbjct:    1 MPRSQINGNFIDKTSSIVANILLRIIPTTSGEKKAFTYYRDGAI 44          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_CUSRE (Photosystem I assembly protein ycf3 OS=Cuscuta reflexa GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.982e-15
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRD 220
            MPRSRINGNF+DKTFSIVANILLRIIPTT GEKEAFTYYRD
Sbjct:    1 MPRSRINGNFLDKTFSIVANILLRIIPTTSGEKEAFTYYRD 41          
The following BLAST results are available for this feature:
BLAST of FC930813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
YCF3_SACHY2.982e-1588.64Photosystem I assembly protein ycf3 OS=Saccharum h... [more]
YCF3_PLAOC2.982e-1595.24Photosystem I assembly protein ycf3 OS=Platanus oc... [more]
YCF3_NYMAL2.982e-1595.24Photosystem I assembly protein ycf3 OS=Nymphaea al... [more]
YCF3_NUPAD2.982e-1595.24Photosystem I assembly protein ycf3 OS=Nuphar adve... [more]
YCF3_MAIZE2.982e-1588.64Photosystem I assembly protein ycf3 OS=Zea mays GN... [more]
YCF3_LIRTU2.982e-1595.24Photosystem I assembly protein ycf3 OS=Liriodendro... [more]
YCF3_HELAN2.982e-1595.24Photosystem I assembly protein ycf3 OS=Helianthus ... [more]
YCF3_DRIGR2.982e-1595.24Photosystem I assembly protein ycf3 OS=Drimys gran... [more]
YCF3_DIOEL2.982e-1590.91Photosystem I assembly protein ycf3 OS=Dioscorea e... [more]
YCF3_CUSRE2.982e-1595.12Photosystem I assembly protein ycf3 OS=Cuscuta ref... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34109C10EF PostHarvP1 Citrus clementina cDNA clone C34109C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930813 ID=FC930813; Name=FC930813; organism=Citrus clementina; type=EST; length=666bp
CTGCTTTTATGTTATTTTGTACTGTACAATTCCTTTGTTTGTGGGATCAT
TTTCTCACAAGAGGTAATGAAACGAATTATAGAATGGATTTTTACCTATG
CCTAGATCGCGGATAAACGGAAATTTTATTGATAAGACCTTTTCGATTGT
AGCCAATATATTATTACGAATAATTCCGACAACTGTAGGAGAAAAAGAGG
CATTTACCTATTACAGAGATGGTGCGATTTGATTAGTTTTTTATTTACCC
CTTTCGGTCTTAGAAGAAAGAAAGACAATTCGGGATAGAAAAAAAAAAAA
AAAAAAAAAGATTATTGAAAAAATCTACGCTTGTTGAAGGTGAAGTTTAT
AGATAAAACCATTCCTTCTGTCGTGTATCCCCGATTAATGCAGCCTCAGA
TGCTTCAATTGTCGATTCTAGTATTGAGCGAAAGGTTACACCTATGGGTT
CTGTATTGCAAGTCAACCCTACTACACCAGTACCAATAGGCGGCATAGGG
GAAGAGGCGCTACGTCTAGGAATCAGCAACACGAAAACTTTGTTATAAAC
TGCCCCCTTTCCTTAGCGGGATCGGGACTAAGAAGAATGGTTGGGATAAC
AAACATCCATCTCGTTCGTACTGTGGATACCCGTANTACCATCGAAGACT
GTTGAAGTGATTAATT
back to top