FC930813

Overview
NameFC930813
Unique NameFC930813
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930813_ssr264 microsatellite FC930813_ssr264:264..275. BLAST: Citrus ESTs to TAIR9
Homology
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_CERDE (Photosystem I assembly protein ycf3 OS=Ceratophyllum demersum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.982e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFIDKT SIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_CALFG (Photosystem I assembly protein ycf3 OS=Calycanthus floridus var. glaucus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.982e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFIDKT SIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_BUXMI (Photosystem I assembly protein ycf3 OS=Buxus microphylla GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.982e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            M RSRINGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MSRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_AMBTC (Photosystem I assembly protein ycf3 OS=Amborella trichopoda GN=ycf3 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.982e-15
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFIDKT SIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_SORBI (Photosystem I assembly protein ycf3 OS=Sorghum bicolor GN=ycf3 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.895e-15
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 229
            MPRSRINGNFIDKT SIVANILL+IIPTT GEK AFTYYRDGAI
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLQIIPTTSGEKRAFTYYRDGAI 44          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_SINAL (Photosystem I assembly protein ycf3 OS=Sinapis alba GN=ycf3 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.895e-15
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFIDKTF+IVA+ILLR+IPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFTIVADILLRVIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_BRAJU (Photosystem I assembly protein ycf3 OS=Brassica juncea GN=ycf3 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.895e-15
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFIDKTF+IVA+ILLR+IPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFTIVADILLRVIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_ARATH (Photosystem I assembly protein ycf3 OS=Arabidopsis thaliana GN=ycf3 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.895e-15
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFIDKTF+IVA+ILLR+IPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFTIVADILLRVIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_CUSEX (Photosystem I assembly protein ycf3 OS=Cuscuta exaltata GN=ycf3 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.087e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            M RSRINGNF+DKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MSRSRINGNFLDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_SOLTU (Photosystem I assembly protein ycf3 OS=Solanum tuberosum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.644e-15
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSR NGNFIDKTFSIVA+ILLR+IPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRTNGNFIDKTFSIVADILLRVIPTTSGEKEAFTYYRDG 42          
The following BLAST results are available for this feature:
BLAST of FC930813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
YCF3_CERDE2.982e-1595.24Photosystem I assembly protein ycf3 OS=Ceratophyll... [more]
YCF3_CALFG2.982e-1595.24Photosystem I assembly protein ycf3 OS=Calycanthus... [more]
YCF3_BUXMI2.982e-1595.24Photosystem I assembly protein ycf3 OS=Buxus micro... [more]
YCF3_AMBTC2.982e-1595.24Photosystem I assembly protein ycf3 OS=Amborella t... [more]
YCF3_SORBI3.895e-1590.91Photosystem I assembly protein ycf3 OS=Sorghum bic... [more]
YCF3_SINAL3.895e-1590.48Photosystem I assembly protein ycf3 OS=Sinapis alb... [more]
YCF3_BRAJU3.895e-1590.48Photosystem I assembly protein ycf3 OS=Brassica ju... [more]
YCF3_ARATH3.895e-1590.48Photosystem I assembly protein ycf3 OS=Arabidopsis... [more]
YCF3_CUSEX5.087e-1592.86Photosystem I assembly protein ycf3 OS=Cuscuta exa... [more]
YCF3_SOLTU6.644e-1590.48Photosystem I assembly protein ycf3 OS=Solanum tub... [more]

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Properties
Property NameValue
Genbank descriptionC34109C10EF PostHarvP1 Citrus clementina cDNA clone C34109C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930813 ID=FC930813; Name=FC930813; organism=Citrus clementina; type=EST; length=666bp
CTGCTTTTATGTTATTTTGTACTGTACAATTCCTTTGTTTGTGGGATCAT
TTTCTCACAAGAGGTAATGAAACGAATTATAGAATGGATTTTTACCTATG
CCTAGATCGCGGATAAACGGAAATTTTATTGATAAGACCTTTTCGATTGT
AGCCAATATATTATTACGAATAATTCCGACAACTGTAGGAGAAAAAGAGG
CATTTACCTATTACAGAGATGGTGCGATTTGATTAGTTTTTTATTTACCC
CTTTCGGTCTTAGAAGAAAGAAAGACAATTCGGGATAGAAAAAAAAAAAA
AAAAAAAAAGATTATTGAAAAAATCTACGCTTGTTGAAGGTGAAGTTTAT
AGATAAAACCATTCCTTCTGTCGTGTATCCCCGATTAATGCAGCCTCAGA
TGCTTCAATTGTCGATTCTAGTATTGAGCGAAAGGTTACACCTATGGGTT
CTGTATTGCAAGTCAACCCTACTACACCAGTACCAATAGGCGGCATAGGG
GAAGAGGCGCTACGTCTAGGAATCAGCAACACGAAAACTTTGTTATAAAC
TGCCCCCTTTCCTTAGCGGGATCGGGACTAAGAAGAATGGTTGGGATAAC
AAACATCCATCTCGTTCGTACTGTGGATACCCGTANTACCATCGAAGACT
GTTGAAGTGATTAATT
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