FC930813

Overview
NameFC930813
Unique NameFC930813
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_WHEAT (Photosystem I assembly protein ycf3 OS=Triticum aestivum GN=ycf3 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 8.677e-15
Identity = 38/44 (86.36%), Postives = 41/44 (93.18%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 229
            MPRSR+NGNFIDKT SIVANILLRIIPTT GEK+AFTYYRDG +
Sbjct:    1 MPRSRVNGNFIDKTSSIVANILLRIIPTTSGEKKAFTYYRDGML 44          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_POPTR (Photosystem I assembly protein ycf3 OS=Populus trichocarpa GN=ycf3 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.677e-15
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRI GN IDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRITGNLIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_POPAL (Photosystem I assembly protein ycf3 OS=Populus alba GN=ycf3 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.677e-15
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRI GN IDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRITGNLIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_PHAAO (Photosystem I assembly protein ycf3 OS=Phalaenopsis aphrodite subsp. formosana GN=ycf3 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.677e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRINGNFIDKT SIVANILLRIIPTT GEK+AFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLRIIPTTSGEKKAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_SOYBN (Photosystem I assembly protein ycf3 OS=Glycine max GN=ycf3 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.133e-14
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRIN NFIDKTFSIVANILLRIIPTT GEK AFTYYRDG
Sbjct:    1 MPRSRINENFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_PHAVU (Photosystem I assembly protein ycf3 OS=Phaseolus vulgaris GN=ycf3 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.133e-14
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRIN NFIDKTFSIVANILLRIIPTT GEK AFTYYRDG
Sbjct:    1 MPRSRINENFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_MORIN (Photosystem I assembly protein ycf3 OS=Morus indica GN=ycf3 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.133e-14
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            M RSRINGNFIDKTFSIVANILLRIIPTT GEKEAF YYRDG
Sbjct:    1 MSRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFAYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_SACOF (Photosystem I assembly protein ycf3 OS=Saccharum officinarum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.525e-14
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 229
            MPRSRINGNFIDKT SIVANILL+IIPTT GEK AFTYYRDG +
Sbjct:    1 MPRSRINGNFIDKTSSIVANILLQIIPTTSGEKRAFTYYRDGML 44          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_LOLPR (Photosystem I assembly protein ycf3 OS=Lolium perenne GN=ycf3 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.525e-14
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 229
            MPRSR NGNFIDKT SIVANILLRIIPTT GEK+AFTYYRDG +
Sbjct:    1 MPRSRANGNFIDKTSSIVANILLRIIPTTSGEKKAFTYYRDGML 44          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_ILLOL (Photosystem I assembly protein ycf3 OS=Illicium oligandrum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.525e-14
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            M RSRINGNFIDKT SIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MSRSRINGNFIDKTSSIVANILLRIIPTTSGEKEAFTYYRDG 42          
The following BLAST results are available for this feature:
BLAST of FC930813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
YCF3_WHEAT8.677e-1586.36Photosystem I assembly protein ycf3 OS=Triticum ae... [more]
YCF3_POPTR8.677e-1592.86Photosystem I assembly protein ycf3 OS=Populus tri... [more]
YCF3_POPAL8.677e-1592.86Photosystem I assembly protein ycf3 OS=Populus alb... [more]
YCF3_PHAAO8.677e-1592.86Photosystem I assembly protein ycf3 OS=Phalaenopsi... [more]
YCF3_SOYBN1.133e-1492.86Photosystem I assembly protein ycf3 OS=Glycine max... [more]
YCF3_PHAVU1.133e-1492.86Photosystem I assembly protein ycf3 OS=Phaseolus v... [more]
YCF3_MORIN1.133e-1492.86Photosystem I assembly protein ycf3 OS=Morus indic... [more]
YCF3_SACOF2.525e-1486.36Photosystem I assembly protein ycf3 OS=Saccharum o... [more]
YCF3_LOLPR2.525e-1486.36Photosystem I assembly protein ycf3 OS=Lolium pere... [more]
YCF3_ILLOL2.525e-1492.86Photosystem I assembly protein ycf3 OS=Illicium ol... [more]

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Properties
Property NameValue
Genbank descriptionC34109C10EF PostHarvP1 Citrus clementina cDNA clone C34109C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930813 ID=FC930813; Name=FC930813; organism=Citrus clementina; type=EST; length=666bp
CTGCTTTTATGTTATTTTGTACTGTACAATTCCTTTGTTTGTGGGATCAT
TTTCTCACAAGAGGTAATGAAACGAATTATAGAATGGATTTTTACCTATG
CCTAGATCGCGGATAAACGGAAATTTTATTGATAAGACCTTTTCGATTGT
AGCCAATATATTATTACGAATAATTCCGACAACTGTAGGAGAAAAAGAGG
CATTTACCTATTACAGAGATGGTGCGATTTGATTAGTTTTTTATTTACCC
CTTTCGGTCTTAGAAGAAAGAAAGACAATTCGGGATAGAAAAAAAAAAAA
AAAAAAAAAGATTATTGAAAAAATCTACGCTTGTTGAAGGTGAAGTTTAT
AGATAAAACCATTCCTTCTGTCGTGTATCCCCGATTAATGCAGCCTCAGA
TGCTTCAATTGTCGATTCTAGTATTGAGCGAAAGGTTACACCTATGGGTT
CTGTATTGCAAGTCAACCCTACTACACCAGTACCAATAGGCGGCATAGGG
GAAGAGGCGCTACGTCTAGGAATCAGCAACACGAAAACTTTGTTATAAAC
TGCCCCCTTTCCTTAGCGGGATCGGGACTAAGAAGAATGGTTGGGATAAC
AAACATCCATCTCGTTCGTACTGTGGATACCCGTANTACCATCGAAGACT
GTTGAAGTGATTAATT
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