FC930813

Overview
NameFC930813
Unique NameFC930813
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_AGRST (Photosystem I assembly protein ycf3 OS=Agrostis stolonifera GN=ycf3 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.525e-14
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 229
            MPRSR NGNFIDKT SIVANILLRIIPTT GEK+AFTYYRDG +
Sbjct:    1 MPRSRANGNFIDKTSSIVANILLRIIPTTSGEKKAFTYYRDGML 44          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_PLALA (Photosystem I assembly protein ycf3 OS=Plantago lanceolata GN=ycf3 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.297e-14
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            M RSR NGNFIDKTFSIVANILL+IIPTT GEKEAFTYYRDG
Sbjct:    1 MSRSRTNGNFIDKTFSIVANILLQIIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_ACOCL (Photosystem I assembly protein ycf3 OS=Acorus calamus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.297e-14
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRIN NFIDKT +IVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINANFIDKTSTIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_ACOAM (Photosystem I assembly protein ycf3 OS=Acorus americanus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.297e-14
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRSRIN NFIDKT +IVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINANFIDKTSTIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_CUCSA (Photosystem I assembly protein ycf3 OS=Cucumis sativus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.625e-14
Identity = 40/43 (93.02%), Postives = 40/43 (93.02%), Query Frame = 2
Query:   98 MPRSR-INGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRS  INGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSGGINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 43          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_STAPU (Photosystem I assembly protein ycf3 OS=Staurastrum punctulatum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.086e-12
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRS+ N NFIDKTF+IVA+ILLRIIPTT  EKEAFTYYRDG
Sbjct:    1 MPRSQRNDNFIDKTFTIVADILLRIIPTTQREKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_PHYPA (Photosystem I assembly protein ycf3 OS=Physcomitrella patens GN=ycf3 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.086e-12
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRS+ N NFIDKTF+IVA+ILLRIIPTT  EKEAFTYYRDG
Sbjct:    1 MPRSQKNDNFIDKTFTIVADILLRIIPTTQREKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_MARPO (Photosystem I assembly protein ycf3 OS=Marchantia polymorpha GN=ycf3 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.086e-12
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRS+ N NFIDKTF+IVA+ILLRIIPTT  EKEAFTYYRDG
Sbjct:    1 MPRSQKNDNFIDKTFTIVADILLRIIPTTQREKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_ZYGCR (Photosystem I assembly protein ycf3 OS=Zygnema circumcarinatum GN=ycf3 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.031e-12
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRS+ N NFIDKTF+IVA+ILLR+IPTT  EKEAFTYYRDG
Sbjct:    1 MPRSQRNDNFIDKTFTIVADILLRVIPTTQREKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_SPIOL (Photosystem I assembly protein ycf3 OS=Spinacia oleracea GN=ycf3 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.031e-12
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 2
Query:  116 NGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            NGNFIDKTFS+VANILL+IIPTT GEKEAFTYYRDG
Sbjct:    4 NGNFIDKTFSVVANILLQIIPTTSGEKEAFTYYRDG 39          
The following BLAST results are available for this feature:
BLAST of FC930813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
YCF3_AGRST2.525e-1486.36Photosystem I assembly protein ycf3 OS=Agrostis st... [more]
YCF3_PLALA3.297e-1490.48Photosystem I assembly protein ycf3 OS=Plantago la... [more]
YCF3_ACOCL3.297e-1490.48Photosystem I assembly protein ycf3 OS=Acorus cala... [more]
YCF3_ACOAM3.297e-1490.48Photosystem I assembly protein ycf3 OS=Acorus amer... [more]
YCF3_CUCSA5.625e-1493.02Photosystem I assembly protein ycf3 OS=Cucumis sat... [more]
YCF3_STAPU3.086e-1283.33Photosystem I assembly protein ycf3 OS=Staurastrum... [more]
YCF3_PHYPA3.086e-1283.33Photosystem I assembly protein ycf3 OS=Physcomitre... [more]
YCF3_MARPO3.086e-1283.33Photosystem I assembly protein ycf3 OS=Marchantia ... [more]
YCF3_ZYGCR4.031e-1280.95Photosystem I assembly protein ycf3 OS=Zygnema cir... [more]
YCF3_SPIOL4.031e-1291.67Photosystem I assembly protein ycf3 OS=Spinacia ol... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34109C10EF PostHarvP1 Citrus clementina cDNA clone C34109C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930813 ID=FC930813; Name=FC930813; organism=Citrus clementina; type=EST; length=666bp
CTGCTTTTATGTTATTTTGTACTGTACAATTCCTTTGTTTGTGGGATCAT
TTTCTCACAAGAGGTAATGAAACGAATTATAGAATGGATTTTTACCTATG
CCTAGATCGCGGATAAACGGAAATTTTATTGATAAGACCTTTTCGATTGT
AGCCAATATATTATTACGAATAATTCCGACAACTGTAGGAGAAAAAGAGG
CATTTACCTATTACAGAGATGGTGCGATTTGATTAGTTTTTTATTTACCC
CTTTCGGTCTTAGAAGAAAGAAAGACAATTCGGGATAGAAAAAAAAAAAA
AAAAAAAAAGATTATTGAAAAAATCTACGCTTGTTGAAGGTGAAGTTTAT
AGATAAAACCATTCCTTCTGTCGTGTATCCCCGATTAATGCAGCCTCAGA
TGCTTCAATTGTCGATTCTAGTATTGAGCGAAAGGTTACACCTATGGGTT
CTGTATTGCAAGTCAACCCTACTACACCAGTACCAATAGGCGGCATAGGG
GAAGAGGCGCTACGTCTAGGAATCAGCAACACGAAAACTTTGTTATAAAC
TGCCCCCTTTCCTTAGCGGGATCGGGACTAAGAAGAATGGTTGGGATAAC
AAACATCCATCTCGTTCGTACTGTGGATACCCGTANTACCATCGAAGACT
GTTGAAGTGATTAATT
back to top