FC930813

Overview
NameFC930813
Unique NameFC930813
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930813_ssr264 microsatellite FC930813_ssr264:264..275. BLAST: Citrus ESTs to TAIR9
Homology
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_CYCTA (Photosystem I assembly protein ycf3 OS=Cycas taitungensis GN=ycf3 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.031e-12
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 229
            MPRS+ N NF DKTF+IVA+ILLRIIPT  GEKEAFTYYRDG +
Sbjct:    1 MPRSQRNDNFTDKTFTIVADILLRIIPTAPGEKEAFTYYRDGVM 44          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_ANGEV (Photosystem I assembly protein ycf3 OS=Angiopteris evecta GN=ycf3 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.031e-12
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRS+ N NFIDKTF+IVA+ILLR+IPTT  EKEAFTYYRDG
Sbjct:    1 MPRSQRNDNFIDKTFTIVADILLRVIPTTQREKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_PINTH (Photosystem I assembly protein ycf3 OS=Pinus thunbergii GN=ycf3 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.875e-12
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRS+ N NFIDKTF+IVA+ILLRIIP   GEKEAFTYYRDG
Sbjct:    1 MPRSQRNDNFIDKTFTIVADILLRIIPMAPGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_PINKO (Photosystem I assembly protein ycf3 OS=Pinus koraiensis GN=ycf3 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.980e-12
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRS+ N NFIDKTF+I+A+ILLRIIP   GEKEAFTYYRDG
Sbjct:    1 MPRSQRNDNFIDKTFTIIADILLRIIPMAPGEKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_PSINU (Photosystem I assembly protein ycf3 OS=Psilotum nudum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.532e-11
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRS+ N NFIDKTF+I A+ILLR+IPTT  EKEAFTYYRDG
Sbjct:    1 MPRSQRNDNFIDKTFTIAADILLRVIPTTRREKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_CHAGL (Photosystem I assembly protein ycf3 OS=Chaetosphaeridium globosum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.000e-11
Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRS+ N NFIDKTF++VA+ILLR+IPTT  EKEAF+YYRDG
Sbjct:    1 MPRSQRNDNFIDKTFTVVADILLRVIPTTRREKEAFSYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_NEPOL (Photosystem I assembly protein ycf3 OS=Nephroselmis olivacea GN=ycf3 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.613e-11
Identity = 31/42 (73.81%), Postives = 38/42 (90.48%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRS+ N NFIDKTF++VA+ILL+++PTT  EKEAFTYYRDG
Sbjct:    1 MPRSQRNDNFIDKTFTVVADILLKVLPTTRREKEAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_CHAVU (Photosystem I assembly protein ycf3 OS=Chara vulgaris GN=ycf3 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.412e-11
Identity = 31/42 (73.81%), Postives = 38/42 (90.48%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRS+ N NFIDKTF+I+A+ILLRI+PT+  E+EAFTYYRDG
Sbjct:    1 MPRSQKNDNFIDKTFTIIADILLRIVPTSQREREAFTYYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_ANTFO (Photosystem I assembly protein ycf3 OS=Anthoceros formosae GN=ycf3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.457e-11
Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRS+ N NFIDKTF+I+A+ILL+IIPTT  EKEAFT+YRDG
Sbjct:    1 MPRSQKNDNFIDKTFTIIADILLQIIPTTQREKEAFTHYRDG 42          
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_OSTTA (Photosystem I assembly protein ycf3 OS=Ostreococcus tauri GN=ycf3 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.820e-11
Identity = 30/42 (71.43%), Postives = 37/42 (88.10%), Query Frame = 2
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRS+ N NFIDKTF++VA+ILL+++PTT  EKEAF YYRDG
Sbjct:    1 MPRSQKNDNFIDKTFTVVADILLKVLPTTRNEKEAFVYYRDG 42          
The following BLAST results are available for this feature:
BLAST of FC930813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
YCF3_CYCTA4.031e-1277.27Photosystem I assembly protein ycf3 OS=Cycas taitu... [more]
YCF3_ANGEV4.031e-1280.95Photosystem I assembly protein ycf3 OS=Angiopteris... [more]
YCF3_PINTH6.875e-1280.95Photosystem I assembly protein ycf3 OS=Pinus thunb... [more]
YCF3_PINKO8.980e-1278.57Photosystem I assembly protein ycf3 OS=Pinus korai... [more]
YCF3_PSINU1.532e-1178.57Photosystem I assembly protein ycf3 OS=Psilotum nu... [more]
YCF3_CHAGL2.000e-1176.19Photosystem I assembly protein ycf3 OS=Chaetosphae... [more]
YCF3_NEPOL2.613e-1173.81Photosystem I assembly protein ycf3 OS=Nephroselmi... [more]
YCF3_CHAVU3.412e-1173.81Photosystem I assembly protein ycf3 OS=Chara vulga... [more]
YCF3_ANTFO4.457e-1176.19Photosystem I assembly protein ycf3 OS=Anthoceros ... [more]
YCF3_OSTTA5.820e-1171.43Photosystem I assembly protein ycf3 OS=Ostreococcu... [more]

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Properties
Property NameValue
Genbank descriptionC34109C10EF PostHarvP1 Citrus clementina cDNA clone C34109C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930813 ID=FC930813; Name=FC930813; organism=Citrus clementina; type=EST; length=666bp
CTGCTTTTATGTTATTTTGTACTGTACAATTCCTTTGTTTGTGGGATCAT
TTTCTCACAAGAGGTAATGAAACGAATTATAGAATGGATTTTTACCTATG
CCTAGATCGCGGATAAACGGAAATTTTATTGATAAGACCTTTTCGATTGT
AGCCAATATATTATTACGAATAATTCCGACAACTGTAGGAGAAAAAGAGG
CATTTACCTATTACAGAGATGGTGCGATTTGATTAGTTTTTTATTTACCC
CTTTCGGTCTTAGAAGAAAGAAAGACAATTCGGGATAGAAAAAAAAAAAA
AAAAAAAAAGATTATTGAAAAAATCTACGCTTGTTGAAGGTGAAGTTTAT
AGATAAAACCATTCCTTCTGTCGTGTATCCCCGATTAATGCAGCCTCAGA
TGCTTCAATTGTCGATTCTAGTATTGAGCGAAAGGTTACACCTATGGGTT
CTGTATTGCAAGTCAACCCTACTACACCAGTACCAATAGGCGGCATAGGG
GAAGAGGCGCTACGTCTAGGAATCAGCAACACGAAAACTTTGTTATAAAC
TGCCCCCTTTCCTTAGCGGGATCGGGACTAAGAAGAATGGTTGGGATAAC
AAACATCCATCTCGTTCGTACTGTGGATACCCGTANTACCATCGAAGACT
GTTGAAGTGATTAATT
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