FC930813

Overview
NameFC930813
Unique NameFC930813
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930813_ssr264 microsatellite FC930813_ssr264:264..275. BLAST: Citrus ESTs to TAIR9
Homology
[Close]
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_CHLAT (Photosystem I assembly protein ycf3 OS=Chlorokybus atmophyticus GN=ycf3 PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 2 
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRS+ N NFIDKTF++VA+ILL+I+PTT  EKEAF YYRDG
Sbjct:    1 MPRSQRNDNFIDKTFTVVADILLKILPTTGREKEAFAYYRDG 42
[Close]
BLAST of FC930813 vs. ExPASy Swiss-Prot
Match: YCF3_MESVI (Photosystem I assembly protein ycf3 OS=Mesostigma viride GN=ycf3 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11
Identity = 29/42 (69.05%), Postives = 38/42 (90.48%), Query Frame = 2 
Query:   98 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 223
            MPRS+ N NFIDKTF++VA+I+L+++PTTV EK AF+YYRDG
Sbjct:    1 MPRSQKNDNFIDKTFTVVADIILKVLPTTVREKAAFSYYRDG 42
The following BLAST results are available for this feature:
BLAST of FC930813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
YCF3_CHLAT7.602e-1173.81Photosystem I assembly protein ycf3 OS=Chlorokybus... [more]
YCF3_MESVI9.928e-1169.05Photosystem I assembly protein ycf3 OS=Mesostigma ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34109C10EF PostHarvP1 Citrus clementina cDNA clone C34109C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930813 ID=FC930813; Name=FC930813; organism=Citrus clementina; type=EST; length=666bp
CTGCTTTTATGTTATTTTGTACTGTACAATTCCTTTGTTTGTGGGATCAT
TTTCTCACAAGAGGTAATGAAACGAATTATAGAATGGATTTTTACCTATG
CCTAGATCGCGGATAAACGGAAATTTTATTGATAAGACCTTTTCGATTGT
AGCCAATATATTATTACGAATAATTCCGACAACTGTAGGAGAAAAAGAGG
CATTTACCTATTACAGAGATGGTGCGATTTGATTAGTTTTTTATTTACCC
CTTTCGGTCTTAGAAGAAAGAAAGACAATTCGGGATAGAAAAAAAAAAAA
AAAAAAAAAGATTATTGAAAAAATCTACGCTTGTTGAAGGTGAAGTTTAT
AGATAAAACCATTCCTTCTGTCGTGTATCCCCGATTAATGCAGCCTCAGA
TGCTTCAATTGTCGATTCTAGTATTGAGCGAAAGGTTACACCTATGGGTT
CTGTATTGCAAGTCAACCCTACTACACCAGTACCAATAGGCGGCATAGGG
GAAGAGGCGCTACGTCTAGGAATCAGCAACACGAAAACTTTGTTATAAAC
TGCCCCCTTTCCTTAGCGGGATCGGGACTAAGAAGAATGGTTGGGATAAC
AAACATCCATCTCGTTCGTACTGTGGATACCCGTANTACCATCGAAGACT
GTTGAAGTGATTAATT
back to top